View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_low_69 (Length: 205)

Name: NF3018_low_69
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_low_69
NF3018_low_69
[»] chr5 (6 HSPs)
chr5 (1-205)||(6109340-6109542)
chr5 (101-205)||(14295461-14295565)
chr5 (146-205)||(11707055-11707114)
chr5 (158-205)||(38104868-38104915)
chr5 (145-205)||(11684413-11684473)
chr5 (101-205)||(34690829-34690932)
[»] chr3 (3 HSPs)
chr3 (155-205)||(21862186-21862236)
chr3 (173-205)||(5292531-5292563)
chr3 (150-202)||(34924552-34924604)
[»] chr8 (6 HSPs)
chr8 (146-205)||(28769350-28769409)
chr8 (158-200)||(14929154-14929196)
chr8 (144-205)||(30277256-30277317)
chr8 (145-205)||(11569468-11569528)
chr8 (173-205)||(30918140-30918172)
chr8 (153-205)||(42215093-42215145)
[»] chr6 (3 HSPs)
chr6 (102-205)||(281859-281962)
chr6 (164-205)||(7785755-7785796)
chr6 (173-205)||(27909649-27909681)
[»] chr1 (3 HSPs)
chr1 (146-205)||(14629977-14630036)
chr1 (147-205)||(10199419-10199477)
chr1 (145-205)||(15361039-15361099)
[»] chr4 (2 HSPs)
chr4 (163-205)||(2592320-2592362)
chr4 (173-205)||(5131261-5131293)
[»] chr2 (1 HSPs)
chr2 (106-198)||(11513858-11513950)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 6109340 - 6109542
Alignment:
Q  1 ttttgctacatggatatctttgctatatatcataaccctgtttggatagacaacttcaactgattgctcatcatacaagtgcttgtgtgtaagctgtgtg 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6109340 ttttgctacatggatatctatgctatatatcataaccctgtttggataaacaacttcaactacttgctcatcatacaagtgcttgtgtgtaagctgtgtg 6109439  T
Q  101 tctataacaaatgataaaataaagtcacagttttcatattagctatataagctattctcattagctatgttcgagagcttttggaaataagctgaaaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6109440 tctataacaaatgataaaataaagtcacagttttcatattagc--tataagctattctcattagctatgttcgagagcttttggaaataagctgaaaaca 6109537  T
Q  201 actta 205  Q
    |||||    
T  6109538 actta 6109542  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 14295461 - 14295565
Alignment:
Q  101 tctataacaaatgataaaataaagtc--acagttttcatattagctatataagctattctcattagctatgttcgagagcttttggaaataagctgaaaa 198  Q
    ||||||||||| ||||||||||||||  || |||||||||| |||  |||||||| || || | ||||||  | |||||||||| ||| |||||||||||    
T  14295461 tctataacaaaagataaaataaagtcaaactgttttcatataagc--tataagctgttttcgtaagctatcctggagagcttttagaagtaagctgaaaa 14295558  T
Q  199 caactta 205  Q
    || ||||    
T  14295559 cagctta 14295565  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 11707055 - 11707114
Alignment:
Q  146 tataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||| || |||| |||||| ||  |||||||||| |||||||||||||||||||||    
T  11707055 tataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaacaactta 11707114  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 38104915 - 38104868
Alignment:
Q  158 tcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||| |||||| || |||||||| ||||||||||||||||||||||||    
T  38104915 tcataagctatcttagagagcttatggaaataagctgaaaacaactta 38104868  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 11684413 - 11684473
Alignment:
Q  145 atataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||||||| |||| ||||||| | ||||||||  ||||||||| |||||||| ||||    
T  11684413 atataagctattttcataagctatgctggagagcttacggaaataagttgaaaacagctta 11684473  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 34690829 - 34690932
Alignment:
Q  101 tctataacaaatgataaaataaagtcacagt--tttcatattagctatataagctattctcattagctatgttcgagagcttttggaaataagctgaaaa 198  Q
    ||||||||||| ||||||||||||||||| |  ||||||| ||||  |||||| | ||||||| ||| || || |||||||| ||||||||||  || ||    
T  34690829 tctataacaaaagataaaataaagtcacaatactttcata-tagc--tataagttgttctcataagccatcttggagagcttatggaaataagtcgataa 34690925  T
Q  199 caactta 205  Q
    |||||||    
T  34690926 caactta 34690932  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 21862236 - 21862186
Alignment:
Q  155 ttctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||||||||| |  |||||||| ||||||||||||||||||||||||    
T  21862236 ttctcattagctatctgggagagcttatggaaataagctgaaaacaactta 21862186  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 5292563 - 5292531
Alignment:
Q  173 gagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||| ||||||||||||||||||||||||    
T  5292563 gagagcttatggaaataagctgaaaacaactta 5292531  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 34924604 - 34924552
Alignment:
Q  150 agctattctcattagctatgttcgagagcttttggaaataagctgaaaacaac 202  Q
    ||||||| |||| |||||| || |||||||| || ||||||||||||||||||    
T  34924604 agctattttcataagctatcttagagagcttatgaaaataagctgaaaacaac 34924552  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 28769409 - 28769350
Alignment:
Q  146 tataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||| || |||| |||||| || ||||| || ||||||||||||||||||||||||    
T  28769409 tataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaactta 28769350  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 14929196 - 14929154
Alignment:
Q  158 tcattagctatgttcgagagcttttggaaataagctgaaaaca 200  Q
    |||| |||||||||  |||||||||||||||||||||||||||    
T  14929196 tcataagctatgttgcagagcttttggaaataagctgaaaaca 14929154  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 30277317 - 30277256
Alignment:
Q  144 tatataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||||| || |||| ||||||  | ||||| || ||||||||||||||||||||||||    
T  30277317 tatataagctgttttcataagctatcctagagagtttatggaaataagctgaaaacaactta 30277256  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 11569528 - 11569468
Alignment:
Q  145 atataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    ||||||||| || |||| ||||||  | ||||| ||||| |||||||||||||||||||||    
T  11569528 atataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaactta 11569468  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 30918140 - 30918172
Alignment:
Q  173 gagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||| ||||||||||||||||||||||||    
T  30918140 gagagcttatggaaataagctgaaaacaactta 30918172  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 42215145 - 42215093
Alignment:
Q  153 tattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||| |||| |||||| || |||||||| || |||||||||||||||||||||    
T  42215145 tattttcataagctatcttggagagcttatgtaaataagctgaaaacaactta 42215093  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 281962 - 281859
Alignment:
Q  102 ctataacaaatgataaaataaagtcaca--gttttcatattagctatataagctattctcattagctatgttcgagagcttttggaaataagctgaaaac 199  Q
    |||||||||| |||||||||||||||    |||||||||| |||||||  |||| |  |||| ||||||  | |||||||  ||||||||||||||||||    
T  281962 ctataacaaaagataaaataaagtcaacttgttttcatataagctata--agctgtgttcataagctatcctagagagctcatggaaataagctgaaaac 281865  T
Q  200 aactta 205  Q
    ||||||    
T  281864 aactta 281859  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 7785796 - 7785755
Alignment:
Q  164 gctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    ||||| || |||||||| ||||||||||||||||||||||||    
T  7785796 gctattttggagagcttatggaaataagctgaaaacaactta 7785755  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 27909681 - 27909649
Alignment:
Q  173 gagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||| ||||||||||||||||||||||||    
T  27909681 gagagcttatggaaataagctgaaaacaactta 27909649  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 14630036 - 14629977
Alignment:
Q  146 tataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    ||||||||||| |||| |||||| || ||||  || ||||||||||||||||||||||||    
T  14630036 tataagctattttcataagctatcttggagactttatggaaataagctgaaaacaactta 14629977  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 10199477 - 10199419
Alignment:
Q  147 ataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    ||||||| || |||| |||||| || |||||||| || |||||||||||||||||||||    
T  10199477 ataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaactta 10199419  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 15361039 - 15361099
Alignment:
Q  145 atataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||| ||| ||||| |||||  | |||||||| || |||||||||||||||||||||    
T  15361039 atataagcgattttcattggctatcctggagagcttatgaaaataagctgaaaacaactta 15361099  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 2592362 - 2592320
Alignment:
Q  163 agctatgttcgagagcttttggaaataagctgaaaacaactta 205  Q
    |||||| || |||||||| ||||||||||||||||||||||||    
T  2592362 agctattttggagagcttatggaaataagctgaaaacaactta 2592320  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 5131293 - 5131261
Alignment:
Q  173 gagagcttttggaaataagctgaaaacaactta 205  Q
    |||||||| ||||||||||||||||||||||||    
T  5131293 gagagcttatggaaataagctgaaaacaactta 5131261  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 11513858 - 11513950
Alignment:
Q  106 aacaaatgataaaataaagtcaca--gttttcatattagctatataagctattctcattagctatgttcgagagcttttggaaataagctgaaaa 198  Q
    |||||| ||||||||||||||| |  |||||||||| |||||||  || | || |||| ||||||  | |||| |||||||||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctata--agttgttttcataagctatcatggagaacttttggaaataagctgaaaa 11513950  T

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