View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_8 (Length: 524)
Name: NF3018_low_8
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_8 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 524
Target Start/End: Complemental strand, 1924162 - 1923651
Alignment:
| Q |
13 |
ttgttcttcctcatcttcatcatacgagaaccgactactccttccacgcttatattgcatcctatactcaagcctctcatctagatacaacgcgtacgtg |
112 |
Q |
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|||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
1924162 |
ttgttcttcctcatcttcatcatacgcgaaccgaccacttcttccacgcttatattgcatcctatactcaagcctctcatctaaatacagcgcgtacgtg |
1924063 |
T |
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| Q |
113 |
cgaacaaacgaagaataatcccatgaattagacttagacttgtccctaaaatcagacatgttaaggagtcgagttccacgttgagttgagaagaatattt |
212 |
Q |
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| T |
1924062 |
cgaacaaacgaagaataatcccatgaattagacttagacttgtccctaaaatcagacatgttaagaagtcgagttccacgttgagttgagaagaatattt |
1923963 |
T |
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| Q |
213 |
cttgttcataagcatgatcaccatcagccaacaacctttgaatcaaaacaagtgtttttaaagcaactgtccaactactagtcttgatcaaacgtttaga |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
1923962 |
cttgttcataagcacgatcaccatcagccaacaacctttgaatcaaaacaagtgtttttaaagcaactgtccaactgcttgtcttgatcaaacgtttaga |
1923863 |
T |
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| Q |
313 |
gagtgtgttcacacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggattttcatcatgtttt |
412 |
Q |
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| T |
1923862 |
gagtgtgttcacacaagaacttatgaatgctcgtgagtaacatgttaagcttagaatctctctaatgtgtctttcttcagctggattttcatcatgtttt |
1923763 |
T |
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| Q |
413 |
gttgctttaacaatggctacttgaagatcacctattgaggcactgcttccaacttttgctatgcctatgcttgtttgatcttttactgctccaatggctc |
512 |
Q |
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| T |
1923762 |
gttgctttaacaatggctacttgaagatcacctattgaggcactgcttccaacttttgctatgcctatgcttgtttgatctttcactgctccaatggctc |
1923663 |
T |
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| Q |
513 |
ttcttaatgtac |
524 |
Q |
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| T |
1923662 |
ttcttaatgtac |
1923651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 16241930 - 16241852
Alignment:
| Q |
323 |
acacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggatttt |
401 |
Q |
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| T |
16241930 |
acacaagcactactgaatgcatgtgaattacatgttaagcttagaatctccctaatgagtttctattcagctggatttt |
16241852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 160 - 521
Target Start/End: Complemental strand, 1328692 - 1328331
Alignment:
| Q |
160 |
aaaatcagacatgttaaggagtcgagttccacgttgagttgagaagaatatttcttgttcataagcatgatcaccatcagccaacaacctttgaatcaaa |
259 |
Q |
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|||||| |||||||| || || ||||| |||||| |||||||||||||||| ||||| ||||||||| | ||||| || | | | ||||||||||||| |
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| T |
1328692 |
aaaatcggacatgttgagaaggcgagtcccacgtcgagttgagaagaatatctcttgctcataagcagggtcaccttcttctagaagcctttgaatcaaa |
1328593 |
T |
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| Q |
260 |
acaagtgtttttaaagcaactgtccaactactagtcttgatcaaacgtttagagagtgtgttcacacaagaacttatgaatgcacgtgagtaacatgtta |
359 |
Q |
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| T |
1328592 |
ataagagttttcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgtta |
1328493 |
T |
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| Q |
360 |
agcttagaatctctctaatatgtctgtcttcagctggattttcatcatgttttgttgctttaacaatggctacttgaagatcacctattgaggcactgct |
459 |
Q |
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| T |
1328492 |
aactcagaatctcccgtatatatttctcttcagccggatattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgct |
1328393 |
T |
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| Q |
460 |
tccaacttttgctatgcctatgcttgtttgatcttttactgctccaatggctcttcttaatg |
521 |
Q |
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||| || |||||| ||||||||||| ||||| |||||||| |||| |||| ||||||||| |
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| T |
1328392 |
tcccaccattgctagtcctatgcttgtctgatcctttactgccccaaaggcttttcttaatg |
1328331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 15001 - 14923
Alignment:
| Q |
323 |
acacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggatttt |
401 |
Q |
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||||||| ||| |||||||| |||| | ||||||||||||||||||||| ||||| || | | |||||||||||||| |
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| T |
15001 |
acacaagcactactgaatgcatgtgaattacatgttaagcttagaatctccctaatgagtttctattcagctggatttt |
14923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 22013692 - 22013614
Alignment:
| Q |
323 |
acacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggatttt |
401 |
Q |
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||||||| ||| |||||||| |||| | ||||||||||||||||||||| ||||| || | | |||||||||||||| |
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| T |
22013692 |
acacaagcactactgaatgcatgtgaattacatgttaagcttagaatctccctaatgagtttctattcagctggatttt |
22013614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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