View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3018_low_9 (Length: 521)
Name: NF3018_low_9
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Complemental strand, 45693864 - 45693374
Alignment:
| Q |
19 |
atgtcccattcacaaaacaaaaatagcagaagttcaattcaaatttctttaacataagctattaaaatgcttgatatatatagatatcaaagagtcacat |
118 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693864 |
atgtcccattcccacaacaaaaatagcagaagttcaattcaaatttctttaacataagctattaaaatgcttgatatatatagatatcaaagagtcacat |
45693765 |
T |
|
| Q |
119 |
catctaactaaaataattttcaccaagttttaannnnnnn-gagagttggcaccatatggttattaactgataatggaaagaactaaagatcttacacta |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45693764 |
catctaactaaaatatttttcaccaagttttaattttttttgagagttggcaccatatggtta---actgataatggaaagaactaaagatcttacacta |
45693668 |
T |
|
| Q |
218 |
atagtggattaaagttaactcctgtttctatactagatttctcatatatttttgtttttgctgacttgatatttcttaggcggataaagcttcaatgcta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693667 |
atagtggattaaagttaactcctgtttctatactagatttctcatatatttttgtttttgctgacttgatatttcttaggcggataaagcttcaatgctg |
45693568 |
T |
|
| Q |
318 |
gatgaggcaattgagtatcttaaatcacttcaactccaactgcaagtattctttctcttcccttttacattttcccttcaatcctttgaattttgatatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693567 |
gatgaggcaattgagtatcttaaatcacttcaactccaactgcaagtattctttctcttcccttttacattttcccttcaatcctttgaattttgatatt |
45693468 |
T |
|
| Q |
418 |
tcacattatattatatccattctaacgcgatattttttctgatctttttacacagatcatgtcaatgggaggtggtggtttatacatgcctatg |
511 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693467 |
tcacattatattatatccattctaatgcgatattttttctgatctttttacacagatcatgtcaatgggaggtggtggtttatacatgcctatg |
45693374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 365
Target Start/End: Original strand, 37935686 - 37935757
Alignment:
| Q |
294 |
taggcggataaagcttcaatgctagatgaggcaattgagtatcttaaatcacttcaactccaactgcaagta |
365 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||||||||||||| ||| ||||||| |||||| | |||||| |
|
|
| T |
37935686 |
taggtggataaagcttctatgctggatgaggcaattgagtatctaaaaacacttcagctccaagttcaagta |
37935757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University