View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019-Insertion-10 (Length: 340)
Name: NF3019-Insertion-10
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 172 - 340
Target Start/End: Complemental strand, 36097738 - 36097570
Alignment:
| Q |
172 |
atgcattaattagtgtagcctaaacccaaaaacaattgcacctaacactctatcgaagaagttaggaaatccataattgagggacatagtttctcctcaa |
271 |
Q |
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| T |
36097738 |
atgcattaattagtgtagcctaaacccaaaaacaattgcacctaacattctaccgaagaagttaggaaatccataattgaggaatacagtttctcctcga |
36097639 |
T |
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| Q |
272 |
gcgttaatcgttcgaatcaaagggggcaataataatttagagctcggtcgggaggtaagaaaagatttg |
340 |
Q |
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| T |
36097638 |
gcgttaatcgtttgaatcaaagggggcaatagtaatttagagctcggtcgggaggtaagaaaaggtttg |
36097570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 36097908 - 36097806
Alignment:
| Q |
7 |
acaaggcagttatcatgcatt--ataggctgcgtcatttttgctaa-aggaaataaaaacaatataaatactatgtttatatattgtaattaatacatcc |
103 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36097908 |
acaaggcagttatcatgcattgtataggccgcgtcatttttgctaataggaaataaaaacaatataaatactatgtttatatattgtaattaacacatcc |
36097809 |
T |
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| Q |
104 |
aat |
106 |
Q |
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||| |
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| T |
36097808 |
aat |
36097806 |
T |
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