View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3019-Insertion-11 (Length: 334)

Name: NF3019-Insertion-11
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3019-Insertion-11
NF3019-Insertion-11
[»] chr5 (10 HSPs)
chr5 (192-334)||(10218537-10218678)
chr5 (179-334)||(11050330-11050486)
chr5 (8-156)||(11050189-11050334)
chr5 (11-200)||(10562727-10562916)
chr5 (8-173)||(10749332-10749497)
chr5 (8-256)||(10719215-10719460)
chr5 (75-197)||(10609416-10609538)
chr5 (8-248)||(10743019-10743253)
chr5 (8-165)||(10765432-10765589)
chr5 (8-129)||(9838645-9838763)
[»] chr6 (6 HSPs)
chr6 (8-283)||(12897185-12897457)
chr6 (11-200)||(12955778-12955967)
chr6 (8-283)||(12929896-12930168)
chr6 (8-241)||(12904851-12905078)
chr6 (22-200)||(12955500-12955678)
chr6 (8-173)||(12946368-12946533)
[»] chr2 (1 HSPs)
chr2 (8-200)||(17925723-17925915)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 192 - 334
Target Start/End: Original strand, 10218537 - 10218678
Alignment:
Q  192 gaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggttgatgctatataattttgtttgtgtggaaaaat 291  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  10218537 gaagggatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggtttatgctatat-attttgtttgtgtggaaaaat 10218635  T
Q  292 tatgtggaacagasaagaagcatatgcgttcaaattctagtgg 334  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  10218636 tatgtggaacagagaagaagcatatgcgttcaaattctagtgg 10218678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 179 - 334
Target Start/End: Original strand, 11050330 - 11050486
Alignment:
Q  179 caaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggttgatgctatataattttgtt 278  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  11050330 caaaaaagaaaatgaaggtatacaaacaaaagtataggtgataagaaagaaaaaggcttcattcggtttaggagaaaggtttatgctgtatatttttgtt 11050429  T
Q  279 tgtgtggaaaaattatg-tggaacagasaagaagcatatgcgttcaaattctagtgg 334  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||| || ||||| ||||||    
T  11050430 tgtgtggaaaaattatgttggaatagagaagaaacatatgcatttaaattatagtgg 11050486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 11050189 - 11050334
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||||| |||||||||||||||||| ||||||||||   ||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  11050189 ccatgccacttgcagaaatggatggaagaattccaagatt---caagagctccatttgggtcacggtatattgtttctttgaatttaatcaatgcaaaat 11050285  T
Q  108 gatctgtttgatttgctaatgcttgtgccacaattttgtttgggcaaaa 156  Q
    |||||||||| ||| ||||||||||||| |||| | |||||||||||||    
T  11050286 gatctgtttggtttcctaatgcttgtgcaacaactctgtttgggcaaaa 11050334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 10562916 - 10562727
Alignment:
Q  11 tgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaatgat 110  Q
    ||||||| |||||| ||||||||||| ||||||||||   |||||||  | | ||| |||| | |||||| ||||||||| || |||||||| |||||||    
T  10562916 tgccacttgcagaagtggatggaagaattccaagatt---caagagcattgtatggatcactggatattgattctttgaatttgagcaatgctaaatgat 10562820  T
Q  111 ctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtata 200  Q
    ||||||| ||| |||||   ||   |||||| |||||||||| |  |||||||||||||||||||| |||   ||| |||| |||||||||||    
T  10562819 ctgtttggtttcctaatgcagccactgccaccattttgtttgtggtaaaccacattaaatttaaggtaaaaagaaaaagaagatgaaggtata 10562727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 10749332 - 10749497
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||||| |||||| ||||||||||| ||||||||||   |||||||| ||||||||||||   |||||| |||||| || ||  ||||||| ||||    
T  10749332 ccatgccacttgcagaagtggatggaagaattccaagatt---caagagctttatttgggtcactcgatattgattctttaaatttgtgcaatgccaaat 10749428  T
Q  108 gatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaaatttaagg 173  Q
    |||||||||| ||| |||||   ||   ||||||  ||||||||| || |||| |||||||||||||||    
T  10749429 gatctgtttggtttcctaatgcagccactgccacggttttgtttgtgccaaacgacattaaatttaagg 10749497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 10719215 - 10719460
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||||| |||||| ||||||||||| ||||||||||   ||||||||  || ||| |||| |  ||||  ||||||||| || |||||||| ||||    
T  10719215 ccatgccacttgcagaagtggatggaagaattccaagatt---caagagcttcatatggatcactggttattcattctttgaatttgagcaatgctaaat 10719311  T
Q  108 gatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccac---attaaatttaaggaaaaccaaaatagaaaatgaaggtatac 201  Q
    |||||||||| ||  |||||   ||   ||||||||||||||||| || |||||||   ||||||||||||| |||   ||| |||| ||||||||||      
T  10719312 gatctgtttggttacctaatgcagccactgccacaattttgtttgtgccaaaccacattattaaatttaaggtaaaaagaaaaagaagatgaaggtat-- 10719409  T
Q  202 aaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaag 256  Q
        |||||| ||| |||||  |||||||||| ||||||| ||||||| ||||||    
T  10719410 ----aaaagtgtagatgacaacaaagaaaaagacttcatttggtttagaagaaag 10719460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 10609538 - 10609416
Alignment:
Q  75 atattgtttctttgaaattaagcaatgcaaaatgatctgtttgatttgctaatgcttgtgccacaattttgtttgggcaaaaccacattaaatttaagga 174  Q
    |||||| ||||||||| ||||||||||  |||| ||| ||||| ||| |||||||   ||||||| |||||||||  | ||||||||||| ||||||||     
T  10609538 atattgattctttgaatttaagcaatgacaaataatcagtttggtttcctaatgccactgccacagttttgtttgtaccaaaccacattatatttaaggt 10609439  T
Q  175 aaaccaaaatagaaaatgaaggt 197  Q
    ||||  ||| |||| ||||||||    
T  10609438 aaacagaaaaagaagatgaaggt 10609416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 10743019 - 10743253
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||| ||||| |||||| ||||||||||| |||||||   | ||||||||| ||| ||| ||||   |||||| ||||||||| || |||||||| ||||    
T  10743019 ccataccacttgcagaagtggatggaagaattccaag---actcaagagctttatatggatcacttgatattgattctttgaatttgagcaatgccaaat 10743115  T
Q  108 gatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtatacaaa 204  Q
    |||||| ||| ||| |||||   ||   |||||| |||||||||| || ||||  ||||||||| |||| |||   ||| |||| ||||||||||         
T  10743116 gatctgattggtttcctaattgagccactgccaccattttgtttgtgccaaactgcattaaattcaaggtaaaaagaaaaagaagatgaaggtat----- 10743210  T
Q  205 caaaagtataggtgacaggaaagaaaaaggcttcattcggttta 248  Q
     |||||| ||| |||||  |||||||||| ||||||| ||||||    
T  10743211 -aaaagtgtagatgacaccaaagaaaaagacttcatttggttta 10743253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 10765432 - 10765589
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    ||||||||||  || || ||||||||||| ||||||||||   |||||||| ||| ||| ||||   |||||| ||||||||| || |||||||| || |    
T  10765432 ccatgccactttcaaaagtggatggaagaattccaagatt---caagagctttatatggatcacttgatattgattctttgaatttgagcaatgccaatt 10765528  T
Q  108 gatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaa 165  Q
    |||||| ||| ||| |||||   ||   |||||| |||||||||| || ||||||||||||    
T  10765529 gatctgattggtttcctaattgagccactgccaccattttgtttgtgccaaaccacattaa 10765589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 9838645 - 9838763
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||| | |||||| ||||| ||||| |||||||| | |  |||| ||| ||||||||||| | |||||| ||||||||| |  |||||||||| ||    
T  9838645 ccatgccagttgcagaagtggatagaagaattccaagaatct--aaga-ctccatttgggtcactggatattgattctttgaattggagcaatgcaagat 9838741  T
Q  108 gatctgtttgatttgctaatgc 129  Q
    |||| ||||| ||| |||||||    
T  9838742 gatcagtttggtttcctaatgc 9838763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 12897457 - 12897185
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||||| |||||||||||||||||| |||||||   ||||||||||  | | |||||||| | | |||| ||||||||| || |||||||| ||||    
T  12897457 ccatgccacttgcagaaatggatggaagaattccaag---attcaagagcattgtatgggtcactggaaattgattctttgaatttgagcaatgccaaat 12897361  T
Q  108 gatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtatacaaa 204  Q
    |||| ||||| ||| ||| |   ||   ||||  |||||||||||| | |||||||||||||||||||| || |  ||| ||   ||||||||||         
T  12897360 gatcagtttggtttcctattgcagccaatgccctaattttgtttggaccaaaccacattaaatttaaggtaagcataaaaaggggatgaaggtat----- 12897266  T
Q  205 caaaagtataggtgacaggaaagaaaaaggcttca-ttcggtttaggagaaa--ggttgatgctatataattttgtttgtgt 283  Q
     |||||| |||||||||  |||||||||| ||||| || ||||||| |||||  |||| ||||||| |||||||||||||||    
T  12897265 -aaaagtgtaggtgacaacaaagaaaaagacttcattttggtttagaagaaagtggtttatgctatttaattttgtttgtgt 12897185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 12955967 - 12955778
Alignment:
Q  11 tgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaatgat 110  Q
    ||||||| |||||||||||||||||| ||||||||||   |||||||  | | ||||||||   | |||| ||||||||| || |||||||| |||||||    
T  12955967 tgccacttgcagaaatggatggaagaattccaagatt---caagagcattgtatgggtcacttgaaattgattctttgaatttgagcaatgccaaatgat 12955871  T
Q  111 ctgtttgatttgctaatgcttg---tgccacaattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtata 200  Q
    | ||||| ||| ||| |||      ||||  |||||||||||| | |||||||||||||||||||| || | |||| || | |||||||||||    
T  12955870 cagtttggtttcctattgcagtcattgccttaattttgtttggaccaaaccacattaaatttaaggtaagcaaaaaaaggagatgaaggtata 12955778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 12930168 - 12929896
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||||| |||||| ||||||||||| ||||||||||   ||||||   | | ||||||||    ||||| ||||||||| || |||||||| | ||    
T  12930168 ccatgccacttgcagaagtggatggaagaattccaagatt---caagagtattgtatgggtcactagttattgattctttgaatttgagcaatgccagat 12930072  T
Q  108 gatctgtttgatttgctaatgcttg---tgccacaattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtatacaaa 204  Q
    |||| ||||| ||| ||| |||      ||||  |||||||||||| |||||||||||||||||||||| || |  ||| || | ||||||||||         
T  12930071 gatcagtttgctttcctattgcagccactgccctaattttgtttggacaaaaccacattaaatttaaggtaatcataaaaaggagatgaaggtat----- 12929977  T
Q  205 caaaagtataggtgacaggaaagaaaaaggcttca-ttcggtttaggagaaa--ggttgatgctatataattttgtttgtgt 283  Q
     |||||| |||||||||  |||||||||| ||||| || ||||||| |||||  |||| ||||||| || ||||||||||||    
T  12929976 -aaaagtgtaggtgacaacaaagaaaaagacttcattttggtttagaagaaagtggtttatgctatttagttttgtttgtgt 12929896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 12905078 - 12904851
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||||| |||||||||||||||||| |||||||   ||||||||||  | | ||||||||    ||||| ||||||||| || |||||||| ||||    
T  12905078 ccatgccacttgcagaaatggatggaagaattccaag---attcaagagcattgtatgggtcactagttattgattctttgaatttgagcaatgccaaat 12904982  T
Q  108 gatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtatacaaa 204  Q
    |||| ||||| ||| ||| |   ||   ||||  ||||||| |||| ||||||||||||||||| |||| || |  ||| || | ||||||||||         
T  12904981 gatcagtttggtttcctattgcagccactgccgtaattttgattggacaaaaccacattaaattgaaggtaagcagaaaaaggagatgaaggtat----- 12904887  T
Q  205 caaaagtataggtgacaggaaagaaaaaggcttcatt 241  Q
     ||||||  ||||||||  ||||||||||||||||||    
T  12904886 -aaaagtggaggtgacaacaaagaaaaaggcttcatt 12904851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 12955678 - 12955500
Alignment:
Q  22 gaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaatgatctgtttgattt 121  Q
    ||||||||||||||| ||||||||||   |||||||  | | ||||||||   | |||| ||||||||| || |||||||| |||||||| ||||| |||    
T  12955678 gaaatggatggaagaattccaagatt---caagagcattgtatgggtcactagaaattgattctttgaatttgagcaatgccaaatgatcagtttggttt 12955582  T
Q  122 gctaatgcttg---tgccacaattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtata 200  Q
     ||| |||      ||||  |||||||||||| | |||||||||||||||||||| || | |||| || | |||||||||||    
T  12955581 cctattgcagtcactgccgtaattttgtttggaccaaaccacattaaatttaaggtaagcaaaaaaaggagatgaaggtata 12955500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 12946533 - 12946368
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||||| |||||| || ||||| || ||||||||||   |||||||| | | |||||||| | | |||| ||||||||| || |||||||| ||||    
T  12946533 ccatgccacttgcagaagtgaatggatgaattccaagatt---caagagctttgtatgggtcactggaaattgattctttgaatttgagcaatgccaaat 12946437  T
Q  108 gatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaaatttaagg 173  Q
    |||| ||||| ||| ||| |   ||   ||||   ||||||||||| | ||||||||||||||||||||    
T  12946436 gatcagtttggtttcctattgcagccactgcccttattttgtttggaccaaaccacattaaatttaagg 12946368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 17925723 - 17925915
Alignment:
Q  8 ccatgccactcgcagaaatggatggaagagttccaagattattcaagagctctatttgggtcacggtatattgtttctttgaaattaagcaatgcaaaat 107  Q
    |||||||||| |||||||||||||||||| |||||||   ||||||||||| | | ||||||||   | |||| ||||||||| || |||||||| ||||    
T  17925723 ccatgccacttgcagaaatggatggaagaattccaag---attcaagagctttgtatgggtcactagaaattgattctttgaatttgagcaatgccaaat 17925819  T
Q  108 gatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtata 200  Q
    |||| ||||| ||| ||| |   ||   ||||  |||||||||||| | ||||||||||||||| |||| || | |||| || | |||||||||||    
T  17925820 gatcagtttggtttcctattgcagccactgccctaattttgtttggaccaaaccacattaaattgaaggtaagcaaaaaaaggagatgaaggtata 17925915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University