View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019-Insertion-14 (Length: 250)
Name: NF3019-Insertion-14
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-14 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 24566345 - 24566588
Alignment:
| Q |
7 |
atattaagcatagataataaatcaaagcaccaaaacacaaacaatatttacaatcattaaccaaaccatgaaacctgttttatccctaaccctttccttc |
106 |
Q |
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| T |
24566345 |
atattaagaatagataataaatcaaagctccaaagctcaaacaatatttacaatcattaaccaaaccatgaaacctgttttatccctaaccctttccttc |
24566444 |
T |
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| Q |
107 |
tttctattttcttttatcaccaatatttcaccaaacaatgctaatgagcaagtattggacataaatggcaccccccttacccctggtggccaatactaca |
206 |
Q |
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| T |
24566445 |
tttctattttcttttatcaccaatatttcaccaaacaatgctattgagcaagtattggacataaatggcaccccccttacccctggtggccaatactaca |
24566544 |
T |
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| Q |
207 |
ttttaccagaaagtgaaaaccctagtattggaggactaacccta |
250 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
24566545 |
ttttaccagaaagtgataaccctagtattggaggactaatccta |
24566588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 2916691 - 2916903
Alignment:
| Q |
35 |
accaaaacacaaacaatatttacaatcattaaccaaaccatgaaacctgttttatccctaaccctttccttctttctattttcttttatcaccaatattt |
134 |
Q |
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| T |
2916691 |
accaaaatacaatcaatatttacacttattaagaaaagcatgaatcctattttatccctcaccatttccttcttcctatttgcttttatcaccaatcttt |
2916790 |
T |
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| Q |
135 |
caccaaacaatgctaatgagcaagtattggacataaatggcaccccccttacccctggtggccaatactacattttaccagaaagtgaaaaccctagtat |
234 |
Q |
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| T |
2916791 |
caccaaacaatgctgctaaacaagtcttagacatacatggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacag |
2916890 |
T |
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| Q |
235 |
tggaggactaacc |
247 |
Q |
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| T |
2916891 |
tggaggactaacc |
2916903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 36 - 250
Target Start/End: Original strand, 2930277 - 2930494
Alignment:
| Q |
36 |
ccaaaacacaaacaatatttacaatcattaaccaaaccatgaaacctgttttatccctaaccctttccttctttcta---ttttcttttatcaccaatat |
132 |
Q |
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||||||||||||||||||||||| |||||| |||||||||| || |||||||||| | |||||||||||| ||| ||| ||||||||||||| | |
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| T |
2930277 |
ccaaaacacaaacaatatttacactcattaggaaaaccatgaatcccattttatcccttagcctttccttcttcctagtatttgtttttatcaccaatct |
2930376 |
T |
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| Q |
133 |
ttcaccaaacaatgctaatgagcaagtattggacataaatggcaccccccttacccctggtggccaatactacattttaccagaaagtgaaaaccctagt |
232 |
Q |
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| T |
2930377 |
ttcaccaaacaatgctgctaaacaagtattagacatacatggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaac |
2930476 |
T |
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| Q |
233 |
attggaggactaacccta |
250 |
Q |
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| T |
2930477 |
agtggaggactaacccta |
2930494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 250
Target Start/End: Original strand, 24554682 - 24554885
Alignment:
| Q |
47 |
acaatatttacaatcattaaccaaaccatgaaacctgttttatccctaaccctttccttctttctattttcttttatcaccaatatttcaccaaacaatg |
146 |
Q |
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|||||||| | | ||||||| |||||||||| || |||||||||||||||||||| ||||| || ||| |||| ||||||||| | ||||||||||| | |
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| T |
24554682 |
acaatattcatactcattaagcaaaccatgagtcccgttttatccctaaccctttctttcttcctttttactttcatcaccaatctctcaccaaacaacg |
24554781 |
T |
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| Q |
147 |
ctaatgagcaagtattggacataaatggcaccccccttacccctggtggccaatactacattttaccagaaagtgaaaaccctagtattggaggactaac |
246 |
Q |
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|| | | | |||||| |||| | |||| | ||| |||||||||||| |||||||||||||||||||| |||||| |||||||| | |||||||||||| |
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| T |
24554782 |
ctgttcaaccagtatttgacaaacatggtaaccctcttacccctggtaaccaatactacattttaccagcaagtgataaccctagcagtggaggactaac |
24554881 |
T |
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| Q |
247 |
ccta |
250 |
Q |
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|||| |
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| T |
24554882 |
ccta |
24554885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 20493365 - 20493429
Alignment:
| Q |
151 |
tgagcaagtattggacataaatggcaccccccttacccctggtggccaatactacattttaccag |
215 |
Q |
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|||||||||||| ||||||||||| | |||| || || ||||| ||||||||||||||||||| |
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| T |
20493365 |
tgagcaagtattagacataaatggtaaccccatttttccaggtggtcaatactacattttaccag |
20493429 |
T |
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