View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019-Insertion-15 (Length: 149)
Name: NF3019-Insertion-15
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-15 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold1173 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 1e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 11391361 - 11391219
Alignment:
| Q |
7 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaactt |
106 |
Q |
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| T |
11391361 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagtttgacacaactttcttaactc |
11391262 |
T |
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| Q |
107 |
gcatactgcctttattggatcgatatcccccgataatgttaat |
149 |
Q |
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| T |
11391261 |
gcatactgcctttattggatcgatatcccccgataatgttaat |
11391219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 11366769 - 11366636
Alignment:
| Q |
8 |
ttgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttg |
107 |
Q |
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| T |
11366769 |
ttgaagtggaataacttcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttg |
11366670 |
T |
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| Q |
108 |
catactgcctttattggatcgatatcccccgata |
141 |
Q |
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| T |
11366669 |
cacactacctttactggatcaatatccccagata |
11366636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 11375477 - 11375344
Alignment:
| Q |
8 |
ttgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttg |
107 |
Q |
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| T |
11375477 |
ttgaagtggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttg |
11375378 |
T |
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| Q |
108 |
catactgcctttattggatcgatatcccccgata |
141 |
Q |
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| T |
11375377 |
cacactacctttactggatcaatatccccagata |
11375344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 11385315 - 11385182
Alignment:
| Q |
8 |
ttgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttg |
107 |
Q |
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| T |
11385315 |
ttgaagtggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttg |
11385216 |
T |
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| Q |
108 |
catactgcctttattggatcgatatcccccgata |
141 |
Q |
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| T |
11385215 |
cacactacctttactggatcaatatccccagata |
11385182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1173 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: scaffold1173
Description:
Target: scaffold1173; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 2097 - 1959
Alignment:
| Q |
7 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaactt |
106 |
Q |
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||||||||||||||||||||| ||| ||||||| || ||||||| ||||||| |||||||||||| |||| ||||||| ||||||||||||||| ||| |
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| T |
2097 |
attgaagtggaataacttcatttgtatttgttgaatccttcttcttatcttttaaaggtccaatcgatactatttcagtttgacacaactttcttagctt |
1998 |
T |
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| Q |
107 |
gcatactgcctttattggatcgatatcccccgataatgt |
145 |
Q |
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| T |
1997 |
gcacactgcctttactggatcaatatcccccgataatgt |
1959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 7e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 17192695 - 17192829
Alignment:
| Q |
7 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaactt |
106 |
Q |
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| T |
17192695 |
attgaagtggaataacttcatttgtatttgttgaccctttcttctcttcttttagaggtccaattgaaactatttcagtttgacacaactttcttagctt |
17192794 |
T |
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| Q |
107 |
gcatactgcctttattggatcgatatcccccgata |
141 |
Q |
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| T |
17192795 |
gcacactccttttatcggatcaatatcccctgata |
17192829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 17186812 - 17186950
Alignment:
| Q |
7 |
attgaagtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaactt |
106 |
Q |
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|||||| |||||||||||||| ||| ||||||| || |||||||| ||||||| ||||||||| || |||| ||||||| ||||||||||||||| ||| |
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| T |
17186812 |
attgaactggaataacttcatttgtatttgttgaatccttcttctcatcttttaaaggtccaattgatactatttcagtttgacacaactttcttagctt |
17186911 |
T |
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| Q |
107 |
gcatactgcctttattggatcgatatcccccgataatgt |
145 |
Q |
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| T |
17186912 |
gcacactgcctttacaggatcaatatcccccgataatgt |
17186950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 17854578 - 17854520
Alignment:
| Q |
41 |
ctctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttc |
99 |
Q |
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| T |
17854578 |
ctctttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttc |
17854520 |
T |
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