View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019-Insertion-16 (Length: 62)
Name: NF3019-Insertion-16
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-16 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 51; Significance: 5e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 25568526 - 25568472
Alignment:
| Q |
8 |
gaggaatatatctttctgagtatcatcatttagagcatcatagcttattttcaac |
62 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25568526 |
gaggaatatatcttcctgagtatcatcatttagagcatcatagcttattttcaac |
25568472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 4343473 - 4343423
Alignment:
| Q |
8 |
gaggaatatatctttctgagtatcatcatttagagcatcatagcttatttt |
58 |
Q |
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||||||||| |||||||| ||||||||||||| | |||| ||||||||||| |
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| T |
4343473 |
gaggaatatttctttctgtgtatcatcatttaaaccatcgtagcttatttt |
4343423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 4135253 - 4135306
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttattttcaac |
62 |
Q |
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|||||||||||| ||| || |||||||||| | |||||||||||||||||||| |
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| T |
4135253 |
aggaatatatctctctcggtgtcatcatttaaaccatcatagcttattttcaac |
4135306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 4358941 - 4358892
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatttt |
58 |
Q |
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|||||||| |||||||| ||||||||||||| | ||||||| |||||||| |
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| T |
4358941 |
aggaatatttctttctgtgtatcatcatttaaaccatcataacttatttt |
4358892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.000000000004; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 5068545 - 5068592
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatt |
56 |
Q |
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|||||||| ||||||| |||||||||||||| |||||||||||||||| |
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| T |
5068545 |
aggaatatttctttctcagtatcatcatttaaagcatcatagcttatt |
5068592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 5424284 - 5424237
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatt |
56 |
Q |
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|
|||||||| ||||||| |||||||||||||| |||||||||||||||| |
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| T |
5424284 |
aggaatatttctttctcagtatcatcatttaaagcatcatagcttatt |
5424237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 5395574 - 5395525
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatttt |
58 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
5395574 |
aggaatatttctttctcagtgtcatcatttaaagcatcatagcttatttt |
5395525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 5133376 - 5133425
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatttt |
58 |
Q |
| |
|
|||||||| ||||||| | |||| ||||||| |||||||||||||||||| |
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| T |
5133376 |
aggaatatttctttctcaatatcttcatttaaagcatcatagcttatttt |
5133425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 5094572 - 5094525
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatt |
56 |
Q |
| |
|
|||||||| ||||||| | | |||||||||| |||||||||||||||| |
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| T |
5094572 |
aggaatatttctttctcaatgtcatcatttaaagcatcatagcttatt |
5094525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 5348906 - 5348859
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatt |
56 |
Q |
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|
|||||||| ||||||| |||||||||||| | |||||| ||||||||| |
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| T |
5348906 |
aggaatatttctttctcagtatcatcattcaaagcatcgtagcttatt |
5348859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 5368991 - 5368944
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatt |
56 |
Q |
| |
|
|||||||| ||||||| | ||||||||||| |||||||||||||||| |
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| T |
5368991 |
aggaatatttctttctcataatcatcatttaaagcatcatagcttatt |
5368944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 8876332 - 8876283
Alignment:
| Q |
9 |
aggaatatatctttctgagtatcatcatttagagcatcatagcttatttt |
58 |
Q |
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|||||||| |||||| | |||||||||||||| |||||||||||||||| |
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| T |
8876332 |
aggaatatttctttcgcaatatcatcatttagaccatcatagcttatttt |
8876283 |
T |
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