View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3019-Insertion-19 (Length: 362)

Name: NF3019-Insertion-19
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3019-Insertion-19
NF3019-Insertion-19
[»] chr3 (3 HSPs)
chr3 (233-362)||(49161280-49161409)
chr3 (8-76)||(49161566-49161634)
chr3 (132-203)||(49161439-49161510)
[»] chr5 (3 HSPs)
chr5 (233-362)||(42651204-42651333)
chr5 (132-203)||(42651103-42651174)
chr5 (12-74)||(42650983-42651045)
[»] chr2 (6 HSPs)
chr2 (233-361)||(23875689-23875817)
chr2 (233-361)||(6085317-6085445)
chr2 (13-76)||(6085098-6085161)
chr2 (138-203)||(6085222-6085287)
chr2 (132-203)||(23875588-23875659)
chr2 (16-74)||(23875473-23875531)
[»] chr7 (2 HSPs)
chr7 (281-361)||(36844917-36844997)
chr7 (13-47)||(36844989-36845023)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 233 - 362
Target Start/End: Complemental strand, 49161409 - 49161280
Alignment:
Q  233 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttggt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49161409 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttggt 49161310  T
Q  333 tttttgttcatcaatgttcccacactttta 362  Q
    ||||||||||||||||||||||||||||||    
T  49161309 tttttgttcatcaatgttcccacactttta 49161280  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 49161634 - 49161566
Alignment:
Q  8 ctttgtcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgcaga 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49161634 ctttgtcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgcaga 49161566  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 49161510 - 49161439
Alignment:
Q  132 cctataaacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49161510 cctatgaacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 49161439  T

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Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 233 - 362
Target Start/End: Original strand, 42651204 - 42651333
Alignment:
Q  233 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttggt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42651204 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttgat 42651303  T
Q  333 tttttgttcatcaatgttcccacactttta 362  Q
    ||||||||||||||||||||||||||||||    
T  42651304 tttttgttcatcaatgttcccacactttta 42651333  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 42651103 - 42651174
Alignment:
Q  132 cctataaacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  42651103 cctataaacagacaacaattcagagttttataatccaaaaatcatattattatttcttgaaagacaacaaga 42651174  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 42650983 - 42651045
Alignment:
Q  12 gtcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgca 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42650983 gtcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgca 42651045  T

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Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 233 - 361
Target Start/End: Original strand, 23875689 - 23875817
Alignment:
Q  233 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttggt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  23875689 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaatcattgccgtgagcaaattttgatgtttgtcttcaacttgat 23875788  T
Q  333 tttttgttcatcaatgttcccacactttt 361  Q
    |||||||||||||||||||||||||||||    
T  23875789 tttttgttcatcaatgttcccacactttt 23875817  T

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Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 233 - 361
Target Start/End: Original strand, 6085317 - 6085445
Alignment:
Q  233 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttggt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6085317 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaatcaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttgat 6085416  T
Q  333 tttttgttcatcaatgttcccacactttt 361  Q
    |||||||||||||||||| ||||||||||    
T  6085417 tttttgttcatcaatgtttccacactttt 6085445  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 6085098 - 6085161
Alignment:
Q  13 tcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgcaga 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6085098 tcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgcaga 6085161  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 6085222 - 6085287
Alignment:
Q  138 aacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 203  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6085222 aacagacaacaattcagagtgttataatccaaaaatcatataattatttcttgaaacacaacaaga 6085287  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 23875588 - 23875659
Alignment:
Q  132 cctataaacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 203  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  23875588 cctatgaacagacaacaattcagagtgttataatccgaaaatcatataattatttcttgaaacacaccaaga 23875659  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 23875473 - 23875531
Alignment:
Q  16 tgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgca 74  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  23875473 tgttcttaaaacacctagtaaataaaattaaacaacagttaacaagaaataccattgca 23875531  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 36844997 - 36844917
Alignment:
Q  281 aaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttggttttttgttcatcaatgttcccacactttt 361  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36844997 aaaattaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttgattttttgttcatcaatgttcccacactttt 36844917  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 36845023 - 36844989
Alignment:
Q  13 tcatgttcttaaaacacccggtaaataaaattaaa 47  Q
    ||||||||||||||||||| |||||||||||||||    
T  36845023 tcatgttcttaaaacacccagtaaataaaattaaa 36844989  T

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