View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3019-Insertion-2 (Length: 716)
Name: NF3019-Insertion-2
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 6 - 556
Target Start/End: Complemental strand, 39093534 - 39092984
Alignment:
| Q |
6 |
caagagggaccctcttcatctttcttttactactattcttcttgaaagatgaggccatgatagaaattgaattcttcttcttattttccccattggtata |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39093534 |
caagagggaccctcttcatctttcttttactactattcttcttgaaagatgaggccatgatagaaattgaattcttcttcttattttccccattggtata |
39093435 |
T |
|
| Q |
106 |
aactggaggaatgttttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgataagattttcggagaaaagaaagaggaattcaat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39093434 |
aactggaggaatgttttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgatgagattttcggagaaaagaaagaggaattcaat |
39093335 |
T |
|
| Q |
206 |
ttgagatggaagaaggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttggagtgtgtttgagagggaagaatgaaaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39093334 |
ttgagatggaagaaggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttggagtgtgtttgagagggaagaatgaaaat |
39093235 |
T |
|
| Q |
306 |
gaaggagggagtgaatatttannnnnnngagaattttcaacaaaaatgggacaatgagggaaacattaaaatttttggtaatattaaggtatgaaaacga |
405 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39093234 |
gaaggagggagtgaatatttatttttttgagaattttcaacaaaaatgggacaatgagggaaacattaaaatttttggtaatattaaggtatgaaaacga |
39093135 |
T |
|
| Q |
406 |
ggtacaagagtgaaaggaaaaatttgaaaatttggaggtaaataaaacactgaaactgaaatgttggcgggtaatggaagaagccaaaactatttggcca |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39093134 |
ggtacaagagtgaaaggaaaaatttgaaaatttggaggtaaataaaacactgaaactgaaatgttggcgggtaatggaagaagccaaaactatttggcca |
39093035 |
T |
|
| Q |
506 |
aaacttaggcatagcgtgcattttttcattattatattcaatggttgaatt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39093034 |
aaacttaggcatagcgtgcattttttcattattatattcaatggttgaatt |
39092984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 577 - 716
Target Start/End: Complemental strand, 39092940 - 39092801
Alignment:
| Q |
577 |
aatgttttccaaaatcacttacatgaatgtcataaatgaattaattgactaagttttaattttgaaaattgaattgaccaattgtgtgtttggaaaacac |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39092940 |
aatgttttccaaaatcacttacatgaatgtcataaatgaattaattgactaagttttaattttgaaaattgaattgaccaattgtgtgtttggaaaacac |
39092841 |
T |
|
| Q |
677 |
taaaaagaaagggaagtagaagctatacattgttagggtg |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39092840 |
taaaaagaaagggaagtagaagctatacattgttagggtg |
39092801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 39231885 - 39231835
Alignment:
| Q |
163 |
gcaacacgataagattttcggagaaaagaaagaggaattcaatttgagatg |
213 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39231885 |
gcaacaagatgagattttcggagaaaagaatgaggaattcaatttgagatg |
39231835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 39231838 - 39231795
Alignment:
| Q |
252 |
gatgtgaaaatgtttttactttttggagtgtgtttgagagggaa |
295 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
39231838 |
gatgtgaaaatgtttttactttttcgaatgtgtttgagagggaa |
39231795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University