View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019-Insertion-21 (Length: 620)
Name: NF3019-Insertion-21
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 52715895 - 52715542
Alignment:
| Q |
7 |
ataattgattataaggctaagtaggcgtcattgtaaacgttcatgcacatgtaaattgggcagtattcagtgatctgcggtagcagcaaagatctttctg |
106 |
Q |
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| T |
52715895 |
ataattgattataaggctaagtaggcgccattgtaaacgttcatgcacatgtaaattgggcagtattcagtgatctgcggtagcagcaaagatctttctc |
52715796 |
T |
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| Q |
107 |
agaaactattattaaataataatgttgtagtaatgtgatggtggagattaattgaaagggacataaacaaaacagatgaatagtttaatacacagttcac |
206 |
Q |
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| T |
52715795 |
agaaactattattaaataataatgttgtagtaatgtgat-gtggagattaattaaaagggacataaacaaaacagatgaatagtttaatacacagttcac |
52715697 |
T |
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| Q |
207 |
catnnnnnnnnnnnnnnnnnnnnnngatgaattcacatcttgtaaaaacggtaacggtttaattaagcagaatgagggaatcatcataattgattaatta |
306 |
Q |
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| T |
52715696 |
cat--------aaaaaaaaaaaaaagatgaattcacatcttgtaaaaacggtaacggtttaattaagcagaatgagggaatcatcataattgattaatta |
52715605 |
T |
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| Q |
307 |
actagtatgatctgtcattttattatgtgttagtttagaacaaacttcaccggagtattgttg |
369 |
Q |
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| T |
52715604 |
actagtatgatctgtcgttttattatgtgttagtttagaacaaacttcaccggagtattgttg |
52715542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 55883634 - 55883584
Alignment:
| Q |
465 |
aaacatcatgatatgtttaacatatgacctcttttcttagtcacttgttgg |
515 |
Q |
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| T |
55883634 |
aaacatcatgttatgcttaacacatgacctcttttcgtagttacttgttgg |
55883584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 465 - 620
Target Start/End: Original strand, 34536432 - 34536585
Alignment:
| Q |
465 |
aaacatcatgatatgtttaacatatgacctcttttcttagtcacttgttggaaagatctggagaaatagaaaccgaagagaattttcagcaggttaagaa |
564 |
Q |
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|||||||||| |||| |||||| ||||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||| |||| || |||||||||| |
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| T |
34536432 |
aaacatcatgctatgcttaacacatgacctcttttcatagtcacttgttgcga-gatatggagaaatagaaac-gaagagattttttagtaggttaagaa |
34536529 |
T |
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| Q |
565 |
agatacttgggcttcagctaatagtattttctcttatcactcttccatgattcaag |
620 |
Q |
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| T |
34536530 |
agatacttgggcttcagttaatagtattttctcttgtcactcttccatgattcaag |
34536585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 608
Target Start/End: Complemental strand, 3426514 - 3426464
Alignment:
| Q |
558 |
ttaagaaagatacttgggcttcagctaatagtattttctcttatcactctt |
608 |
Q |
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| T |
3426514 |
ttaagaaagataattgggcttcaattaatagtattttctcatatcattctt |
3426464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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