View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019-Insertion-22 (Length: 718)
Name: NF3019-Insertion-22
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 8 - 718
Target Start/End: Complemental strand, 43092403 - 43091695
Alignment:
| Q |
8 |
catatgtcatctccgttctccaaatcagtaatcctttaagctccgccgacgcaggagcgccgacagcagctccaagtgacattgatttaatcggaattat |
107 |
Q |
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| T |
43092403 |
catatgtcatctccgttctccaaatcagtaatcctttaagctccgccgacgcagaagcgccgacggcagctccaagtgacattgatttaatcggaattat |
43092304 |
T |
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| Q |
108 |
gtcaaaacaaggttgtcagtctttcgcagatttgttacgtgtttcaaaagcactccctactttcaaagaatccgttgacggcggtttaactgttttctgt |
207 |
Q |
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| T |
43092303 |
gtcaaaacaaggttgtcagtctttcgcagatttgttacgtgtttcaaaagcactccctactttcaaagaatccgttgacggcggtttaactgttttctgt |
43092204 |
T |
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| Q |
208 |
ccaacagataccgccgtcagcggtttctctgcaaagtacaaaaacctaacagactctcaaaaggtttccctccttttataccacggagttccagtttacc |
307 |
Q |
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| T |
43092203 |
ccaacagataccgccgtcagcggtttctctgcaaagtacaaaaacctaacagactctcaaaaggtttccctccttttataccacggagttccagtttacc |
43092104 |
T |
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| Q |
308 |
aatcattacagatgttgaaatcaaacaatggtgtaatgaacacattagcaacagaaggccataacaaatatgatttcacagtccaaaatgatggtgaaga |
407 |
Q |
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| T |
43092103 |
aatcattacagatgttgaaatcaaacaatggtgtaatgaacacattagcaacagaaggccataacaaatatgatttcacagtccaaaatgatggtgaaga |
43092004 |
T |
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| Q |
408 |
tgttaaccttgaaaccaaagttaacactgcaaatattgttggtacattaatagatcaagatccttttgtagtgtataagataagtaaggttttgatgcca |
507 |
Q |
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| T |
43092003 |
tgttaaccttgaaaccaaagttaacactgcaaatattgttggtacattaatagatcaagatccttttgtagtgtataagataagtaaggttttgatgcca |
43091904 |
T |
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| Q |
508 |
agagaattgtttaagggagttaaggaggagaaagatttagcaccagctgaatcaccaaaagcagcaaagagtaaagccaagaagaagaaggcggcgccgg |
607 |
Q |
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| T |
43091903 |
agagaattgtttaagggagttaaggaggagaaagatttagcaccagctgaatcaccaaaagcagcaaagagtaaagccaagaagaagaaggcggcgccgg |
43091804 |
T |
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| Q |
608 |
cggcggatgaggatgcagactcaccggcrgatgggaccagatgcagatgcagattctgatgatcagaaagctgctgatgatgaaaaatggagttaatgga |
707 |
Q |
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| T |
43091803 |
cggcggatgaggatgcagactcaccggcagat-ggaccagatgcagatgcagattctgatgatcagaaagctgctgataatg-aaaatggagttaatgga |
43091706 |
T |
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| Q |
708 |
ttaaatcaagg |
718 |
Q |
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| T |
43091705 |
ttaaatcaagg |
43091695 |
T |
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