View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019-Insertion-24 (Length: 815)
Name: NF3019-Insertion-24
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-24 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 227 - 815
Target Start/End: Complemental strand, 17207579 - 17206991
Alignment:
| Q |
227 |
tgttcgggtactctttaaacaataactagtggttaaaattataatgtattgttctatcaattttaccaaaattttaacaagccaaaggctaacaactgat |
326 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17207579 |
tgttcgggtactatttaaacaataactagtggttaaaattataatgtattgttctatcaattttaccaaaattttaacaaggcaaaggctaacaactgat |
17207480 |
T |
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| Q |
327 |
gactcatacctctatcttttcaaacttttccttagtcatttgctctttcttgacatggctttgtaaatttgttacataaagagatatgctacacgagaaa |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||| |||||| |
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| T |
17207479 |
gactcatacctctatcttttcaaacttttccttagtcatttgc-ctttcttgacatggctttgtaaatttgttacataaagaaaaatgttacatgagaaa |
17207381 |
T |
|
| Q |
427 |
acgacttcatatatttttaaattaaagcatcaagagtcagtttacaagaaatatttctcacctttaactctattaacacctgcttccataaatttttcat |
526 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| |||||| | ||||||||||| |
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| T |
17207380 |
acgagttcatatatttttaaattaaagcatcaagagccagtttgcaagaatattttctcacctttaactctattaacacatgcttctagaaatttttcat |
17207281 |
T |
|
| Q |
527 |
ttacttcttttaagattacaagataattactaagaattaaagtcgtagctattcttaagcccattagtcctccaccaaggattgcaacctttttcactgg |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
17207280 |
ttacttcttttaagattacaagataattactaagaattaaagtcgtagctattcctaagttcattagtcctccaccaaggattgcaacatttttcactgg |
17207181 |
T |
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| Q |
627 |
tcgaggaatcaatccacgatcggtaacacccagtacccattcatgcaaagagttgttgaaaaacttcatatgcacataaattatgaaaagaaagtattgt |
726 |
Q |
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| T |
17207180 |
tcgagaaatcaatccacgatcggtaacgccgagtacccattcatgccaagagttgttgaaaaacttcatatgcacataaattatgaaaagaaagtattgt |
17207081 |
T |
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| Q |
727 |
agaacataatggctaattcatgttctaacttttatgctaactttgagtttacatttcagacat-atacaaaacctcaagtcagaaaatgt |
815 |
Q |
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| T |
17207080 |
aaaacataatggttaattcatgttctaacttttatgctaactttgagtttacatttcagacataatacaaaaccccaagtcagaaaatgt |
17206991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 343 - 759
Target Start/End: Complemental strand, 14115973 - 14115566
Alignment:
| Q |
343 |
ttttcaaacttttccttagtcatttgctctttcttgacatggctttgtaaatttgttacataaagagatatgctacacgagaaaacgacttcatatattt |
442 |
Q |
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|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| | |||||| | | ||||| | ||| | ||| |||| |
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| T |
14115973 |
ttttcaaatttttccttagtcatttgtcctttcttgacacggctttgtaaatttgctgcataaaaaaaagtgctatatgag---------ttataaattt |
14115883 |
T |
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| Q |
443 |
ttaaattaaagcatcaagagtcagtttacaagaaatatttctcacctttaactctattaacacctgcttccataaatttttcatttacttcttttaagat |
542 |
Q |
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| T |
14115882 |
ttaaatttaagcatcaagaaccaatttacaaggatcttttctcacctttaactctattaacacctgcttccaagaatttttcatttacttctttcaagat |
14115783 |
T |
|
| Q |
543 |
tacaagataattactaagaattaaagtcgtagctattcttaagcccattagtcctccaccaaggattgcaacctttttcactggtcgaggaatcaatcca |
642 |
Q |
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||| |||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
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| T |
14115782 |
aacaggatagttactaagaattaaagcagttgctattccggagcccattagtcctccaccaaggattgcaacctttttcacttgtctaggaaccaatcca |
14115683 |
T |
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| Q |
643 |
cgatcggtaacacccagtacccattcatgcaaagagttgttgaaaaacttcatatgcacataaattatgaaaagaaagtattgtagaacataatggctaa |
742 |
Q |
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| T |
14115682 |
cgatcggtaaccccaggtacctgttcatgcgaggaaatgttgaaaaatttcatatatacggaacttctgaaaagaaagtactagggaacagaatagctaa |
14115583 |
T |
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| Q |
743 |
ttcatgttctaactttt |
759 |
Q |
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|||| |||||||||||| |
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| T |
14115582 |
ttcaggttctaactttt |
14115566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 17206646 - 17206436
Alignment:
| Q |
8 |
aatacataattagaaaa-taatgcattgtgtttagtttttaaaccttcgtcattaataactaataattaccaagaaa---acatgaattaaatgcataca |
103 |
Q |
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| T |
17206646 |
aatacataattagaaaaataacgcattgtatttagtttttaaacctccatcattaataactaataattacaaaaaaagaaacatgaattaaatgcataca |
17206547 |
T |
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| Q |
104 |
tatttgtactgacccttaatcttttccatagacttacataaa-cttcaattgtcatttgtgtttcttcacatacatatttgacgtcaatttcaatttttt |
202 |
Q |
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| T |
17206546 |
tgtttgtactgaccctttatcttctccatagacttacgtaaaacttcaagtgtcgtttgtgtttcttcacatacatatttgacgtccatttcaatttctt |
17206447 |
T |
|
| Q |
203 |
ctctcaaatca |
213 |
Q |
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| T |
17206446 |
ctctcgaatca |
17206436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 17209929 - 17209792
Alignment:
| Q |
8 |
aatacataattagaaaataatgcattgtgtttagtttttaaaccttcgtcattaataactaataattaccaagaaaacatgaattaaatgcatacatatt |
107 |
Q |
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| T |
17209929 |
aatacataattaaaaaataatgcattgtgtttagtttttaaaccttcgtcattaataactaataattaccaagaaaacatgaattaaatgcatacatgtt |
17209830 |
T |
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| Q |
108 |
tgtactgacccttaatcttttccatagacttacataaa |
145 |
Q |
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||||| |||||||||| || |||||||||||||||||| |
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| T |
17209829 |
tgtaccgacccttaatattctccatagacttacataaa |
17209792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 21231526 - 21231661
Alignment:
| Q |
207 |
caaatcactcaaagaaaacatgttcgggtactctttaaacaataactagtggttaaaattataatgtattgttctatcaattttaccaaaattttaacaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |||||||||| |
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| T |
21231526 |
caaatcactcaaagaaaacatgttcgggtactctttaaacaataactagtaattaaaattataatgtattcttctatcagttttaccaacattttaacaa |
21231625 |
T |
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| Q |
307 |
gccaaaggctaacaactgatgactcatacctctatc |
342 |
Q |
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| T |
21231626 |
gccaaaggctaacaaccgatgacccatacctctatc |
21231661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 481 - 653
Target Start/End: Original strand, 49799108 - 49799280
Alignment:
| Q |
481 |
ttctcacctttaactctattaacacctgcttccataaatttttcatttacttcttttaagattacaagataattactaagaattaaagtcgtagctattc |
580 |
Q |
| |
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||||||||||||| ||||| | ||| || |||| |||||||||||||||||||| || || ||| ||||||||| || ||||||| || ||||||| |
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| T |
49799108 |
ttctcacctttaatcctattgataccagcatccaagaatttttcatttacttctttcaatatgacagaataattactcagtattaaagctgttgctattc |
49799207 |
T |
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| Q |
581 |
ttaagcccattagtcctccaccaaggattgcaacctttttcactggtcgaggaatcaatccacgatcggtaac |
653 |
Q |
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| T |
49799208 |
cagagcccattagtcctccaccaaggatggcaaccttcttcacgggtcttggaaccagaccacgatcagtaac |
49799280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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