View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3019-Insertion-25 (Length: 541)

Name: NF3019-Insertion-25
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3019-Insertion-25
NF3019-Insertion-25
[»] chr1 (16 HSPs)
chr1 (141-541)||(41007113-41007517)
chr1 (10-112)||(41007514-41007616)
chr1 (152-233)||(52913303-52913384)
chr1 (168-256)||(38698969-38699057)
chr1 (478-541)||(41007425-41007488)
chr1 (142-215)||(18608749-18608822)
chr1 (157-233)||(1173173-1173249)
chr1 (171-233)||(38699115-38699177)
chr1 (464-541)||(38698971-38699048)
chr1 (141-230)||(18981156-18981244)
chr1 (139-199)||(26879587-26879647)
chr1 (477-540)||(2633307-2633370)
chr1 (171-233)||(2633308-2633370)
chr1 (471-540)||(52913296-52913365)
chr1 (107-199)||(2633204-2633296)
chr1 (141-205)||(18608671-18608735)
[»] chr2 (33 HSPs)
chr2 (108-434)||(11791550-11791876)
chr2 (308-455)||(4188775-4188921)
chr2 (265-453)||(6694224-6694398)
chr2 (92-225)||(4188973-4189106)
chr2 (111-225)||(12612449-12612562)
chr2 (171-377)||(14166023-14166224)
chr2 (142-233)||(5009257-5009348)
chr2 (111-233)||(25895068-25895190)
chr2 (464-538)||(11791737-11791811)
chr2 (471-540)||(31630221-31630290)
chr2 (102-215)||(44556579-44556692)
chr2 (111-206)||(5009353-5009447)
chr2 (92-256)||(11791361-11791517)
chr2 (139-206)||(31630156-31630223)
chr2 (142-233)||(3876890-3876981)
chr2 (128-226)||(6694108-6694207)
chr2 (145-199)||(4511868-4511922)
chr2 (142-196)||(4511942-4511996)
chr2 (137-199)||(33847620-33847682)
chr2 (137-215)||(36694484-36694562)
chr2 (157-226)||(14166348-14166417)
chr2 (142-190)||(4512049-4512097)
chr2 (171-215)||(30265502-30265546)
chr2 (171-226)||(4188685-4188740)
chr2 (142-233)||(31630228-31630318)
chr2 (111-189)||(43699435-43699513)
chr2 (102-199)||(1316089-1316186)
chr2 (496-541)||(8035440-8035485)
chr2 (157-206)||(9501014-9501063)
chr2 (142-206)||(36694406-36694471)
chr2 (142-203)||(39442414-39442474)
chr2 (137-205)||(25894994-25895062)
chr2 (496-540)||(30265502-30265546)
[»] chr5 (37 HSPs)
chr5 (111-540)||(7209851-7210279)
chr5 (141-337)||(36759696-36759888)
chr5 (249-407)||(35188081-35188231)
chr5 (342-440)||(36760610-36760707)
chr5 (138-226)||(1996232-1996320)
chr5 (142-226)||(5746266-5746350)
chr5 (111-199)||(28559422-28559510)
chr5 (137-217)||(35461525-35461605)
chr5 (157-257)||(36760726-36760826)
chr5 (102-217)||(25456329-25456444)
chr5 (171-233)||(7210217-7210279)
chr5 (102-215)||(16327152-16327265)
chr5 (102-206)||(16327278-16327382)
chr5 (137-197)||(28559324-28559384)
chr5 (102-206)||(33491566-33491670)
chr5 (130-226)||(35187982-35188078)
chr5 (480-540)||(36759726-36759786)
chr5 (169-215)||(12774319-12774365)
chr5 (137-215)||(17400633-17400711)
chr5 (139-204)||(10827286-10827351)
chr5 (170-215)||(12713055-12713100)
chr5 (181-226)||(38682727-38682772)
chr5 (464-540)||(7209911-7209987)
chr5 (102-210)||(20927899-20928007)
chr5 (171-215)||(33491683-33491727)
chr5 (84-179)||(15207603-15207698)
chr5 (465-540)||(35188023-35188098)
chr5 (141-199)||(4942991-4943049)
chr5 (496-541)||(12713055-12713100)
chr5 (496-541)||(12774319-12774364)
chr5 (142-199)||(23661971-23662028)
chr5 (142-199)||(23796542-23796599)
chr5 (142-199)||(37642888-37642945)
chr5 (509-541)||(4943082-4943114)
chr5 (108-180)||(4943166-4943238)
chr5 (496-540)||(16327221-16327265)
chr5 (92-180)||(35812181-35812269)
[»] chr4 (37 HSPs)
chr4 (171-380)||(40119579-40119788)
chr4 (90-233)||(17231970-17232113)
chr4 (142-233)||(12592273-12592364)
chr4 (171-233)||(55617504-55617566)
chr4 (171-233)||(55624808-55624870)
chr4 (393-450)||(40120705-40120762)
chr4 (102-206)||(12498674-12498778)
chr4 (142-226)||(45787193-45787277)
chr4 (142-233)||(51950564-51950655)
chr4 (111-233)||(2470060-2470182)
chr4 (111-205)||(40395162-40395256)
chr4 (142-203)||(24684142-24684203)
chr4 (111-199)||(2469962-2470048)
chr4 (111-199)||(26782479-26782567)
chr4 (111-199)||(41083117-41083205)
chr4 (103-199)||(41083240-41083336)
chr4 (111-199)||(45038362-45038450)
chr4 (171-226)||(25056006-25056061)
chr4 (171-226)||(41519264-41519319)
chr4 (139-205)||(12498800-12498866)
chr4 (464-541)||(17232050-17232127)
chr4 (102-225)||(2787941-2788061)
chr4 (181-233)||(24369186-24369238)
chr4 (171-206)||(25056073-25056108)
chr4 (110-204)||(9999471-9999565)
chr4 (195-233)||(12697240-12697278)
chr4 (137-215)||(26782382-26782459)
chr4 (486-540)||(40119579-40119633)
chr4 (171-233)||(40147074-40147136)
chr4 (87-180)||(2470173-2470266)
chr4 (477-538)||(12592304-12592365)
chr4 (109-206)||(53863497-53863594)
chr4 (137-189)||(11884811-11884863)
chr4 (163-207)||(12592368-12592412)
chr4 (485-541)||(45787193-45787249)
chr4 (170-210)||(46196293-46196333)
chr4 (111-199)||(51950667-51950755)
[»] chr7 (24 HSPs)
chr7 (265-455)||(22026499-22026689)
chr7 (111-233)||(4048265-4048387)
chr7 (142-215)||(29019342-29019415)
chr7 (464-540)||(23164037-23164113)
chr7 (90-225)||(6068694-6068829)
chr7 (138-225)||(22026377-22026464)
chr7 (111-226)||(30869559-30869674)
chr7 (171-233)||(27280737-27280799)
chr7 (102-207)||(11975501-11975606)
chr7 (477-537)||(4048328-4048388)
chr7 (102-198)||(22750370-22750466)
chr7 (171-254)||(23164030-23164113)
chr7 (107-226)||(26978283-26978402)
chr7 (111-233)||(40951793-40951918)
chr7 (111-197)||(6694718-6694804)
chr7 (174-235)||(3198337-3198398)
chr7 (137-230)||(26185911-26186008)
chr7 (496-540)||(29019371-29019415)
chr7 (478-537)||(3198337-3198396)
chr7 (471-541)||(22026409-22026478)
chr7 (137-215)||(29710490-29710568)
chr7 (471-540)||(27280737-27280806)
chr7 (137-206)||(27576510-27576579)
chr7 (102-218)||(6694585-6694700)
[»] chr6 (22 HSPs)
chr6 (278-440)||(5197507-5197669)
chr6 (92-210)||(2761577-2761695)
chr6 (90-226)||(3848530-3848666)
chr6 (102-218)||(21598613-21598729)
chr6 (102-233)||(24059719-24059850)
chr6 (141-215)||(17136937-17137011)
chr6 (102-199)||(17342627-17342724)
chr6 (142-206)||(2761495-2761559)
chr6 (92-180)||(9982654-9982742)
chr6 (173-233)||(35225561-35225621)
chr6 (163-207)||(9982785-9982829)
chr6 (138-206)||(35050626-35050694)
chr6 (102-205)||(21598499-21598602)
chr6 (111-198)||(35225461-35225548)
chr6 (472-540)||(364108-364176)
chr6 (485-540)||(3848611-3848666)
chr6 (171-233)||(364108-364170)
chr6 (102-215)||(9982841-9982953)
chr6 (90-199)||(13812226-13812335)
chr6 (471-540)||(24059788-24059857)
chr6 (142-199)||(31091261-31091317)
chr6 (496-540)||(21598616-21598660)
[»] chr3 (45 HSPs)
chr3 (278-440)||(3378912-3379074)
chr3 (132-233)||(47891272-47891373)
chr3 (137-230)||(25848453-25848546)
chr3 (152-233)||(27768410-27768491)
chr3 (102-226)||(36900033-36900157)
chr3 (111-226)||(26976379-26976494)
chr3 (171-233)||(40286401-40286463)
chr3 (137-199)||(50332522-50332584)
chr3 (138-233)||(5442545-5442641)
chr3 (92-206)||(47573875-47573987)
chr3 (171-233)||(51833359-51833421)
chr3 (91-180)||(3169696-3169785)
chr3 (102-215)||(18019992-18020105)
chr3 (477-541)||(47891271-47891335)
chr3 (142-233)||(32186625-32186716)
chr3 (85-180)||(47573672-47573767)
chr3 (157-207)||(14624225-14624275)
chr3 (109-199)||(39714545-39714635)
chr3 (137-199)||(43650073-43650135)
chr3 (142-231)||(28813931-28814020)
chr3 (171-215)||(40209797-40209841)
chr3 (111-199)||(47069715-47069803)
chr3 (111-206)||(25848350-25848445)
chr3 (477-540)||(27768429-27768492)
chr3 (477-540)||(32186624-32186687)
chr3 (137-206)||(14964918-14964987)
chr3 (102-207)||(40286292-40286397)
chr3 (111-187)||(36667278-36667354)
chr3 (138-233)||(43650147-43650243)
chr3 (496-540)||(47069699-47069743)
chr3 (171-203)||(49364399-49364431)
chr3 (159-206)||(18019933-18019980)
chr3 (168-215)||(26724181-26724228)
chr3 (485-540)||(36900033-36900088)
chr3 (111-205)||(252109-252203)
chr3 (142-199)||(13902990-13903047)
chr3 (471-540)||(25848443-25848512)
chr3 (142-199)||(26724104-26724161)
chr3 (480-537)||(28813963-28814020)
chr3 (138-199)||(36374893-36374954)
chr3 (152-205)||(47069632-47069685)
chr3 (102-215)||(47573749-47573862)
chr3 (94-190)||(26976491-26976587)
chr3 (140-196)||(36374992-36375047)
chr3 (139-199)||(47891200-47891260)
[»] chr8 (22 HSPs)
chr8 (171-256)||(22813440-22813525)
chr8 (137-230)||(9399981-9400075)
chr8 (171-233)||(14550121-14550183)
chr8 (171-233)||(36052999-36053061)
chr8 (137-197)||(28618825-28618885)
chr8 (90-233)||(9089950-9090093)
chr8 (137-215)||(41151494-41151572)
chr8 (159-199)||(14895130-14895170)
chr8 (145-199)||(14895018-14895072)
chr8 (175-225)||(27855727-27855777)
chr8 (472-541)||(9399972-9400041)
chr8 (111-256)||(24793024-24793169)
chr8 (141-206)||(27127967-27128032)
chr8 (464-540)||(22813449-22813525)
chr8 (102-199)||(27052584-27052677)
chr8 (111-178)||(27855560-27855627)
chr8 (477-540)||(36052998-36053061)
chr8 (137-215)||(24909574-24909652)
chr8 (141-210)||(38414956-38415026)
chr8 (157-206)||(24827466-24827515)
chr8 (171-215)||(24083206-24083250)
chr8 (142-210)||(27128050-27128118)
[»] scaffold0157 (2 HSPs)
scaffold0157 (102-206)||(21699-21803)
scaffold0157 (139-205)||(21611-21677)
[»] scaffold0002 (1 HSPs)
scaffold0002 (141-220)||(12212-12290)
[»] scaffold0128 (1 HSPs)
scaffold0128 (171-233)||(2504-2566)
[»] scaffold0018 (1 HSPs)
scaffold0018 (137-209)||(161581-161653)
[»] scaffold1191 (2 HSPs)
scaffold1191 (169-226)||(1349-1406)
scaffold1191 (485-541)||(1350-1406)
[»] scaffold0279 (1 HSPs)
scaffold0279 (137-206)||(1114-1183)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 141 - 541
Target Start/End: Complemental strand, 41007517 - 41007113
Alignment:
Q  141 ctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatctaatag 240  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  41007517 ctttaaattaatttggtcacatataagtcttttaagtttgtaaacgttttcaatttagtcattctgttaatcaaacattacaaaaatgatgatctgatag 41007418  T
Q  241 ttaagtgtatgatgtggtagttatgtttgtaaatgacggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41007417 ttaagtgtatgatgtggtagttatgtttgtaaatgacggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatg 41007318  T
Q  341 tgtataatggctttgatttgaggttcataaagaatgacaatgaaagagtcatagttggttgcaaggatgaatgcccttggattgttttatgttctaagat 440  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41007317 tgtataatagctttgatttgaggttcataaagaatgacaatgaaagagtcatagttggttgcaaggatggatgcccttggattgttttatgttctaagat 41007218  T
Q  441 atctaatgaggatactgtcatgt----cacttaactgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaact 536  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||    
T  41007217 atctaatgaggatactgtcatgttgtacacttaactgccgcatcatcatttttgtaacatttcgttaacataatgactaaattgaaaaaatttacaaact 41007118  T
Q  537 taaaa 541  Q
    |||||    
T  41007117 taaaa 41007113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 41007616 - 41007514
Alignment:
Q  10 tatgttcactggagtcaatcttttcttatatttaatagtgaggcagtataattttattcaaattagaaaattatatataagctaaattacatcatatgtc 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41007616 tatgttcaccggagtcaatcttttcttatatttaatagtgaggcattataattttattcaaattagaaaattatatataagctaaattacatcatatgtc 41007517  T
Q  110 ttt 112  Q
    |||    
T  41007516 ttt 41007514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 52913384 - 52913303
Alignment:
Q  152 tttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||||||| |||| || ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||    
T  52913384 tttgatcacacataagtcctttaagtttgtaaacgttttctatttagtccttctgttaaccaaacattacaaaaacgatgat 52913303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 38698969 - 38699057
Alignment:
Q  168 tcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtg 256  Q
    |||||||| |||||||||||||||||||||||  |  |||||| |||| |||||||||| |||||| ||  ||||||||||||||||||    
T  38698969 tcttttaaatttgtaaacgttttcaatttagtcatgttgttaaccaaatattacaaaaacgatgatgtagaagttaagtgtatgatgtg 38699057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 478 - 541
Target Start/End: Original strand, 41007425 - 41007488
Alignment:
Q  478 atcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    ||||||||||||||||  |||||||||||  |||||||||||||||| ||||||||||||||||    
T  41007425 atcatcatttttgtaatgtttgattaacagaatgactaaattgaaaacgtttacaaacttaaaa 41007488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 18608822 - 18608749
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    ||||| ||| |||||||| | |||| || |||||||||||||||||||||||||||||||||| ||||| ||||    
T  18608822 tttaagttattttgatcatagataagtcctttaagtttgtaaacgttttcaatttagttcttcggttaaccaaa 18608749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 1173249 - 1173173
Alignment:
Q  157 tcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||| |||| || ||| ||||||| |||||||||||||||||  ||||||||| ||||||||||||||| ||||||    
T  1173249 tcacacataagtcctttgagtttgtgaacgttttcaatttagtctttctgttaaacaaacattacaaaaacgatgat 1173173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 38699177 - 38699115
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||||||||||||||| | |||| ||||| ||||| ||||||||| ||||||    
T  38699177 tttaagtttgtaaacgttttcaatttaatccttcggttaaccaaacgttacaaaaacgatgat 38699115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 464 - 541
Target Start/End: Complemental strand, 38699048 - 38698971
Alignment:
Q  464 cacttaactgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    ||||||||| |  ||||||| ||||||||| ||||| ||||||  |||||||||||||||| ||||||||| ||||||    
T  38699048 cacttaacttctacatcatcgtttttgtaatatttggttaacaacatgactaaattgaaaacgtttacaaatttaaaa 38698971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 18981244 - 18981156
Alignment:
Q  141 ctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgat 230  Q
    |||||| ||| ||| |||| |||||| |  |||||||||||||| |||||||| |||||  |||| |||| |||||||||||||||||||    
T  18981244 ctttaagttattttaatcatatataagttatttaagtttgtaaatgttttcaa-ttagtcattctattaaccaaacattacaaaaatgat 18981156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 26879647 - 26879587
Alignment:
Q  139 tcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||||||| ||| ||||||||||||||  || ||||| ||| |||||||||||||||||||    
T  26879647 tcctttaagttattttgatcacatatatgtcctttaaatttttaaacgttttcaatttagt 26879587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 540
Target Start/End: Original strand, 2633307 - 2633370
Alignment:
Q  477 catcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||||| |||||||||  |||| ||||||| ||||||||||| |||| ||||||||| |||||    
T  2633307 catcatcgtttttgtaatgtttggttaacataatgactaaattaaaaatgtttacaaatttaaa 2633370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 2633370 - 2633308
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||| ||||||||| |||| ||||||||  || |||||| ||||||||||||||| ||||||    
T  2633370 tttaaatttgtaaacatttttaatttagtcattatgttaaccaaacattacaaaaacgatgat 2633308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 52913296 - 52913365
Alignment:
Q  471 ctgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||| ||||||| |||||||||  |||| ||||||  | |||||||| ||||| |||||||||||||||    
T  52913296 ctgccacatcatcgtttttgtaatgtttggttaacagaaggactaaatagaaaacgtttacaaacttaaa 52913365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 2633204 - 2633296
Alignment:
Q  107 gtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||||||| || ||  ||||| || | || ||||| ||| |||| | ||| ||||||| ||||||||||||||| ||||| |||||||    
T  2633204 gtcttttaagtttgagatttgtaatagattgttcatttaagttattttggttacacataaatcatttaagtttgtaaacattttcgatttagt 2633296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 18608671 - 18608735
Alignment:
Q  141 ctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttct 205  Q
    |||||| ||| |||| |||||  ||| || |||||||||||||| |||||||||||||| |||||    
T  18608671 ctttaagttattttggtcacacttaagtcctttaagtttgtaaatgttttcaatttagtccttct 18608735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 108 - 434
Target Start/End: Complemental strand, 11791876 - 11791550
Alignment:
Q  108 tcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgt 207  Q
    |||||||||||| | |||  ||||| ||| ||| ||||| ||| |||| ||||| |||| || | |||||||||||||||||||||||||||  || |||    
T  11791876 tcttttaagtttgaagtttgtaatagatatgtcatttaagttattttggtcacacataagtcctataagtttgtaaacgttttcaatttagtcattttgt 11791777  T
Q  208 taatcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtggtagttatgtttgtaaatgacggacattatgatgtaaattctcatcaaagg 307  Q
    ||| ||||| ||||||||| ||||||||   |||||||||||||| |||| ||||| |||||||||||| | |||||| ||||||||||| |||||||||    
T  11791776 taaccaaacgttacaaaaacgatgatctggcagttaagtgtatgaagtggcagttaagtttgtaaatgatgaacattaggatgtaaattcccatcaaagg 11791677  T
Q  308 aagagttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggttcataaagaatgacaatgaaagagtcatagttggttgcaagga 407  Q
    |||||||||| |||||| |||||||| |||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  11791676 aagagttcaaggaagctattatcaatcattatgtgtataatagcttcgattcgaggttcataaagaatgacaatgagagagtcagagttggttgcaagga 11791577  T
Q  408 tgaatgcccttggattgttttatgttc 434  Q
     | ||||||||||||||||||||||||    
T  11791576 cggatgcccttggattgttttatgttc 11791550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 308 - 455
Target Start/End: Complemental strand, 4188921 - 4188775
Alignment:
Q  308 aagagttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggttcataaagaatgacaatgaaagagtcatagttggttgcaagga 407  Q
    |||||||||| |||| |||||||||||||| | |||||| || ||| ||||||||||||||||||||||| ||||| || |||| ||||| |||||||||    
T  4188921 aagagttcaaggaagttgttatcaattattctttgtata-tgacttcgatttgaggttcataaagaatgaaaatgagagggtcaaagttgattgcaagga 4188823  T
Q  408 tgaatgcccttggattgttttatgttctaagatatctaatgaggatac 455  Q
    || ||| |||||||||||||||| |||||||||| || ||||||||||    
T  4188822 tgtatgtccttggattgttttatattctaagatacctgatgaggatac 4188775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 265 - 453
Target Start/End: Complemental strand, 6694398 - 6694224
Alignment:
Q  265 gtttgtaaatgacggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggt 364  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||| |   | ||   | | | ||  |||||    
T  6694398 gtttgtaaacgatggacattaggatgtaaattctcatcaaaggaagagtttaaggaagttgttatcaattattct---tcta---ggtataat--gaggt 6694307  T
Q  365 tcataaagaatgacaatgaaagagtcatagttggttgcaaggatgaatgcccttggattgttttatgttctaagatatctaatgaggat 453  Q
    ||||||||||||||||||| |||||      | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  6694306 tcataaagaatgacaatgagagagt------ttgttgcaaggatgaatgcccttggattgttttatgttctaagatacctaatcaggat 6694224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 4189106 - 4188973
Alignment:
Q  92 taaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttc 191  Q
    |||||||||||| | ||||||||||||| |||||  ||||||||||||||||||| ||| ||||||||||||||| ||  |||||||| |||||||||||    
T  4189106 taaattacatcaaacgtcttttaagtttgaggtttgtaatatataggtcctttaagttattttgatcacatataagtccattaagtttataaacgttttc 4189007  T
Q  192 aatttagttcttctgttaatcaaacattacaaaa 225  Q
    ||||||||  || |||||| ||||| ||| ||||    
T  4189006 aatttagtcattttgttaaccaaacgttataaaa 4188973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 12612449 - 12612562
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    |||||||||||||||  ||||| || |||| ||||||||| |||||||||| |||| || |||||||||||||| ||||||||||||  |||||||||||    
T  12612449 tttaagtttaaggtttgtaatagattggtcttttaaattattttgatcacacataagtcatttaagtttgtaaatgttttcaattta-ctcttctgttaa 12612547  T
Q  211 tcaaacattacaaaa 225  Q
     ||||||||||||||    
T  12612548 ccaaacattacaaaa 12612562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 171 - 377
Target Start/End: Original strand, 14166023 - 14166224
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtggtagttatgtttgt 270  Q
    |||||||||||||| ||||||||||||||  || | |||| ||||| ||||||||   |||||  |  |||||||| |||||||| | |||||    ||     
T  14166023 tttaagtttgtaaatgttttcaatttagtcattttattaaccaaacgttacaaaaca-atgatgcagcagttaagtttatgatgtagcagttaa---tga 14166118  T
Q  271 aaatgacggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggttcataa 370  Q
    ||| || |||||||| ||||||| || ||||||||||||||||| || |||||| |||||||||||| |||||||| || |||  ||||||| |||||||    
T  14166119 aaacgatggacatta-gatgtaagttttcatcaaaggaagagtttaaggaagcttttatcaattattttgtgtatagtgacttcaatttgagtttcataa 14166217  T
Q  371 agaatga 377  Q
    |||||||    
T  14166218 agaatga 14166224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 5009257 - 5009348
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||| ||| |||||||||| |||| ||||||| ||||||||| |||||||||||||| ||||| |||| ||||||||||||||| ||||||    
T  5009257 tttaagttattttgatcacacataagtcttttatgtttgtaaatgttttcaatttagtccttctcttaaccaaacattacaaaaacgatgat 5009348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 25895190 - 25895068
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    |||||||||||||||  ||| | || |  ||||||| ||| |||  ||||| |||| || ||| ||||||||||||||||||||||||| ||| ||||||    
T  25895190 tttaagtttaaggtttgtaacagattgaacctttaagttattttagtcacacataagtcctttcagtttgtaaacgttttcaatttagtccttttgttaa 25895091  T
Q  211 tcaaacattacaaaaatgatgat 233  Q
     ||||||||||||||| ||||||    
T  25895090 ccaaacattacaaaaacgatgat 25895068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 464 - 538
Target Start/End: Original strand, 11791737 - 11791811
Alignment:
Q  464 cacttaactgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaactta 538  Q
    ||||||||||||  |||||| |||||||||| |||| ||||||  |||||||||||||||| |||||||||||||    
T  11791737 cacttaactgccagatcatcgtttttgtaacgtttggttaacaaaatgactaaattgaaaacgtttacaaactta 11791811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 31630221 - 31630290
Alignment:
Q  471 ctgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||||  ||||||||||||||    
T  31630221 ctgccacatcatcgtttttgtaacatttggttaacaaaatgactaaattgaaaacatttacaaacttaaa 31630290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 44556579 - 44556692
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||| |||||  ||||| || | |||||||| ||| |||||||||| |||| || |||||||||  | ||||||||||||||||||    
T  44556579 cataagtcctttaagtttgaggtttgtaataaattgatcctttaacttattttgatcacacataagtcctttaagtttacatacgttttcaatttagttc 44556678  T
Q  202 ttctgttaatcaaa 215  Q
    |||| |||| ||||    
T  44556679 ttctattaaccaaa 44556692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 5009447 - 5009353
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||||||| |||||  ||| |||| | |||||||| ||| |||  ||||| |||| || ||||||||||||||||||||||||||||||||||||    
T  5009447 tttaagtttgaggtttgtaacatattgatcctttaagttatttttgtcacacataa-tcctttaagtttgtaaacgttttcaatttagttcttctg 5009353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 11791361 - 11791517
Alignment:
Q  92 taaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttc 191  Q
    |||||||||||||  ||||||||||| | | ||| |||||| ||||||  ||||||||| |||| |||||  ||| |  ||||||||||||||||||| |    
T  11791361 taaattacatcatgggtcttttaagtatgacgtttataataaataggtattttaaattattttggtcacacgtaagttatttaagtttgtaaacgtttcc 11791460  T
Q  192 aatttagttcttctgttaatcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtg 256  Q
    ||        ||||||||||||||| ||||||||| |||||| ||  ||||||||| || |||||    
T  11791461 aa--------ttctgttaatcaaacgttacaaaaacgatgatgtagaagttaagtgcataatgtg 11791517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 31630156 - 31630223
Alignment:
Q  139 tcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    |||||||| ||| |||| ||||| |||| |||||||||||||||||||||||| ||||||| ||||||    
T  31630156 tcctttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcgatttagtccttctg 31630223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 3876981 - 3876890
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||| ||| |||| ||||| |||| || |||| || ||||||| ||| ||||||||| ||||| |||| ||||||||||||||| ||||||    
T  3876981 tttaagttattttggtcacacataagtcctttacgtatgtaaacctttccaatttagtccttctattaaccaaacattacaaaaacgatgat 3876890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 6694108 - 6694207
Alignment:
Q  128 taatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaa-cgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||| ||| ||| ||||| ||| |||||||||| ||||||||||||||||||||||   ||||||| | |||  ||||||||||||||| ||| |||||    
T  6694108 taataaataagtcatttaagttattttgatcacacataaatcttttaagtttgtaaagatttttcaaatgagtctttctgttaatcaaacgttataaaaa 6694207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 4511868 - 4511922
Alignment:
Q  145 aaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||||| ||| |||||| |||| ||||||||||||||||||||||| ||||||||    
T  4511868 aaattattttaatcacacataagtcttttaagtttgtaaacgtttttaatttagt 4511922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 4511942 - 4511996
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaattt 196  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||| ||||||||||    
T  4511942 tttaagttattttgatcacatataagtcctttaagtttgtaaacattttcaattt 4511996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 33847682 - 33847620
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||||||||||||| |||| || ||||||| || ||||||||| ||||| |||||||||||||    
T  33847682 ggtcctttaaattattttggtcgcatataagtcctttaagtttttaaacattttcaatttagt 33847620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 36694562 - 36694484
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||||||| |||| ||||| |||| || ||||||||||||||   ||||||||||||  ||||||||| ||||    
T  36694562 ggtcctttaaattattttggtcacacataagtcctttaagtttgtaaaaaatttcaatttagtctttctgttaaccaaa 36694484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 14166417 - 14166348
Alignment:
Q  157 tcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||| ||||| | ||||||||| ||||||||||||||||||| ||||| |||| ||||  |||||||||    
T  14166417 tcacacataaaccctttaagtttttaaacgttttcaatttagtccttctattaagcaaatgttacaaaaa 14166348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 4512097 - 4512049
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgtttt 190  Q
    ||||||||| ||||||| ||||||| || ||||||||||||||||||||    
T  4512097 tttaaattattttgatcccatataagtcctttaagtttgtaaacgtttt 4512049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 30265502 - 30265546
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||    
T  30265502 tttaagtttgtaaacgttttcaatttagtcattctgttaaacaaa 30265546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 4188685 - 4188740
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||||||| ||||||||||||||||| |  |||| |||| |||||||||||||||    
T  4188685 tttaagtttctaaacgttttcaatttattcattctattaaccaaacattacaaaaa 4188740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 31630318 - 31630228
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||| ||| |||| ||||| |||| ||||| ||||||||||| ||||||||||||||  || |||||| ||||  ||||||||| ||||||    
T  31630318 tttaagttattttggtcacacataagtcttt-aagtttgtaaatgttttcaatttagtcattttgttaaccaaatgttacaaaaacgatgat 31630228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 43699513 - 43699435
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttt 189  Q
    ||||||||| |||||  ||| |||| | |||||||| ||| |||| ||||| |||| ||||||||||||||||| ||||    
T  43699513 tttaagtttgaggtttgtaacatattgatcctttaatttattttggtcacacataagtcttttaagtttgtaaatgttt 43699435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 1316089 - 1316186
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||| ||| |||| |||| |||||  ||| ||||| || |||||| ||| ||||||| || |||| || ||||||||||||||||||| ||| |||||    
T  1316089 cataagtcctttatgtttgaggtttgtaacatatatgttctttaagttattttgatcgcacataagtcctttaagtttgtaaacgtttgcaacttagt 1316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 8035440 - 8035485
Alignment:
Q  496 tttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    |||| ||||||| ||||||||||| |||| ||||||||||||||||    
T  8035440 tttggttaacataatgactaaattaaaaacgtttacaaacttaaaa 8035485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 9501014 - 9501063
Alignment:
Q  157 tcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||| |||| || ||||||||||||||||||||| ||||||| ||||||    
T  9501014 tcacacataagtcctttaagtttgtaaacgttttcgatttagtccttctg 9501063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 36694406 - 36694471
Alignment:
Q  142 tttaaattaatttgatcacatataaatc-ttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||| ||| |||| |||||||||| || |||||||||||||||  ||||||||||||| ||||||    
T  36694406 tttaagttattttggtcacatataagtccttttaagtttgtaaatattttcaatttagtccttctg 36694471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 39442474 - 39442414
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttctt 203  Q
    ||||| ||| |||| ||||| | |||||||| || |||||||||||||||||||||||||||    
T  39442474 tttaagttattttggtcacacacaaatctttgaa-tttgtaaacgttttcaatttagttctt 39442414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 25894994 - 25895062
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttct 205  Q
    |||||||||| ||| |||| || ||||||| || ||||||||||||||| ||||  ||||||| |||||    
T  25894994 ggtcctttaagttattttggtcgcatataagtcctttaagtttgtaaacatttttgatttagtccttct 25895062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 30265546 - 30265502
Alignment:
Q  496 tttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||| ||||||  |||||||||||||||| |||||||||||||||    
T  30265546 tttgtttaacagaatgactaaattgaaaacgtttacaaacttaaa 30265502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 5e-79; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 111 - 540
Target Start/End: Original strand, 7209851 - 7210279
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    |||| |||| |||||  ||||| ||| ||| ||||| ||| |||| ||||| |||| || ||||||||||||||||||||||||||||||||| ||||||    
T  7209851 tttatgtttgaggtttgtaataaatacgtcatttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaatttagttcttatgttaa 7209950  T
Q  211 tcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtggtagttatgtttgtaaatgacggacattatgatgtaaattctcatcaaaggaag 310  Q
     ||||||||||||||| |||||| | | | ||||||||| ||| |||  || |  |||||||| || ||||||||||||||||||| ||||||||||||     
T  7209951 ccaaacattacaaaaacgatgatgtgacaattaagtgtaagatatggcggtaagatttgtaaacgatggacattatgatgtaaattttcatcaaaggaat 7210050  T
Q  311 agttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggttcataaagaatgacaatgaaagagtcatagttggttgcaaggatga 410  Q
    ||||||| ||||||||||||||||||| ||||||||| | ||| |||||||| |||||||||||||| ||||  |||  ||    || ||||||||||||    
T  7210051 agttcaaggaagctgttatcaattattttgtgtataacgacttcgatttgagattcataaagaatgaaaatg--agaagca----tgattgcaaggatga 7210144  T
Q  411 atgcccttggattgttttatgttctaagatatctaatgaggatac-tgtcatgtcac----ttaactgccgcatcatcatttttgtaacatttgattaac 505  Q
    ||  ||||| |||||||||||||||||||| ||| |||||||||| |||||  ||||     |||||| | |||||| ||||||||||| ||| ||||||    
T  7210145 atttccttgcattgttttatgttctaagatgtctgatgaggatacatgtcacatcacacatctaactgtcacatcattatttttgtaacgtttaattaac 7210244  T
Q  506 atgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |  ||||||||||| |||| |||||||||||||||    
T  7210245 agaatgactaaatttaaaacgtttacaaacttaaa 7210279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 141 - 337
Target Start/End: Original strand, 36759696 - 36759888
Alignment:
Q  141 ctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatctaatag 240  Q
    |||||||||| |||| |||| ||||| || |||||||||||||| ||||||||||||||  || |||||| ||||||||||||||||||||   |   ||    
T  36759696 ctttaaattattttggtcacttataagtcctttaagtttgtaaatgttttcaatttagtcattatgttaaccaaacattacaaaaatgatg---tggcag 36759792  T
Q  241 ttaagtgtatgatgtggtagttatgtttgtaaatgacggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattatt 337  Q
    |||||||| |||||||| |||||  |||||||| ||  || |||| |||||| |||||||||||| ||||||||||| |||| ||||||||||||||    
T  36759793 ttaagtgtgtgatgtggaagtta-atttgtaaacgatagatattaggatgtatattctcatcaaatgaagagttcaaggaagttgttatcaattatt 36759888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 249 - 407
Target Start/End: Original strand, 35188081 - 35188231
Alignment:
Q  249 atgatgtggtagttatgtttgtaaatgacggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatgtgtataat 348  Q
    ||||||||| | ||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||||  |||   |||||||||| || ||||||||||    
T  35188081 atgatgtggcaattaagtttgtaaacgatggacattaggatgtaaattctcatcaaaggaagaattcagggaa---gttatcaatttttctgtgtataat 35188177  T
Q  349 ggctttgatttgaggttcataaagaatgacaatgaaagagtcatagttggttgcaagga 407  Q
    ||||| |||||||     |||||| |||||||||| || |||| |||||||||||||||    
T  35188178 ggcttcgatttga-----ataaaggatgacaatgagagggtcagagttggttgcaagga 35188231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 36760610 - 36760707
Alignment:
Q  342 gtataatggctttgatttgaggttcataaagaatgacaatgaaagagtcatagttggttgcaaggatgaatgcccttggattgttttatgttctaagat 440  Q
    |||||| |||||  |||||||||||||||| ||||| ||||| || |||| ||||||||| ||||||| ||| |||| |||||||||||||| ||||||    
T  36760610 gtataacggcttcaatttgaggttcataaaaaatgataatgagagggtcaaagttggttgtaaggatg-atgtcctttgattgttttatgttataagat 36760707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 1996232 - 1996320
Alignment:
Q  138 gtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||||||| ||| |||| ||||| |||| || | |||||||||||||||||||||||||||  || || ||| |||||||||||||||    
T  1996232 gtcctttaagttattttggtcacacataagtcctataagtttgtaaacgttttcaatttagtctttttgataaccaaacattacaaaaa 1996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 5746350 - 5746266
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||||||| |||| ||| | |||| || |||||||||||||||||||| ||||||||  ||||||||| ||||| |||||||||    
T  5746350 tttaaattattttggtcatacataagtcatttaagtttgtaaacgtttttaatttagtctttctgttaaccaaacgttacaaaaa 5746266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 28559510 - 28559422
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||| ||||| |||| | || |||||||||||||| |||  ||||| |||| || ||||||||| |||||||||||||||||||    
T  28559510 tttaagtttgaggtttataacagattggtcctttaaattattttagtcacacataagtcctttaagtttataaacgttttcaatttagt 28559422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 35461525 - 35461605
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaaca 217  Q
    |||||||||||||| |||||||||| |||| || |||||||||||||| |||||| ||||||| ||| | |||| ||||||    
T  35461525 ggtcctttaaattattttgatcacaaataagtcctttaagtttgtaaaagttttcgatttagtccttatattaaccaaaca 35461605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 36760826 - 36760726
Alignment:
Q  157 tcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtg 256  Q
    ||||| |||| |||||| ||||||||||| ||||||||||||| ||||| |||| ||||||||  |||||| || || |   ||||||||||||||||||    
T  36760826 tcacacataagtctttttagtttgtaaacattttcaatttagtccttctattaaccaaacatttaaaaaattataatatggcagttaagtgtatgatgtg 36760727  T
Q  257 g 257  Q
    |    
T  36760726 g 36760726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 25456329 - 25456444
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||| |||||  ||| | || |||||||||| ||| |||| ||||| |||| ||||||||||| ||||| |||||| ||||||| |    
T  25456329 cataagtcctttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacaaataagtcttttaagttggtaaatgttttcgatttagtcc 25456428  T
Q  202 ttctgttaatcaaaca 217  Q
    |||| |||| ||||||    
T  25456429 ttctattaagcaaaca 25456444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 7210279 - 7210217
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||||||||||||||||| ||||||||  |||||||||| |||| |||||||||| |||||    
T  7210279 tttaagtttgtaaacgttttaaatttagtcattctgttaattaaacgttacaaaaataatgat 7210217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 16327152 - 16327265
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||| |||||  ||| | || |||| ||||| ||| |||| | ||| |||| || ||||||||||||||||||||||||||||| |    
T  16327152 cataagtcctttaagtttgaggtttgtaacagattggtcgtttaagttattttggtaacacataagtcctttaagtttgtaaacgttttcaatttagtcc 16327251  T
Q  202 ttctgttaatcaaa 215  Q
    || |||||| ||||    
T  16327252 ttatgttaaccaaa 16327265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 16327382 - 16327278
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||| |||||  ||| | || | |||||||| ||| |||| ||||| |||| |  ||||||||||||||||||||||||||||| |    
T  16327382 cataagtcctttaagtttgaggtttgtaacagattgatcctttaagttattttggtcacaaataagtactttaagtttgtaaacgttttcaatttagtcc 16327283  T
Q  202 ttctg 206  Q
    |||||    
T  16327282 ttctg 16327278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 28559324 - 28559384
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaattta 197  Q
    |||||||||| ||| |||| ||||| |||| || |||||||||||||||||||||||||||    
T  28559324 ggtcctttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaattta 28559384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 33491566 - 33491670
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| |||||||||||||||  ||||  ||  ||||||||| ||| |||||||||| |||| || ||||| ||||||||  ||||||||||||| |    
T  33491566 cataagtcctttaagtttaaggtttgtaatcaattagtcctttaagttattttgatcacagataagtcctttaactttgtaaaaattttcaatttagtcc 33491665  T
Q  202 ttctg 206  Q
    |||||    
T  33491666 ttctg 33491670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 35187982 - 35188078
Alignment:
Q  130 atatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||||||||  ||||| ||| |||| ||||| ||||||| ||||||||||||||| |||| |||||| |  || |||||||||||| ||| |||||    
T  35187982 atatataggtattttaagttattttggtcacacataaatcatttaagtttgtaaacatttttaatttactgtttatgttaatcaaacgttataaaaa 35188078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 36759786 - 36759726
Alignment:
Q  480 catcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||||||||||||  |||| ||||||| ||||||||||||||||  ||||||||||||||    
T  36759786 catcatttttgtaatgtttggttaacataatgactaaattgaaaacatttacaaacttaaa 36759726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 12774365 - 12774319
Alignment:
Q  169 cttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||||    
T  12774365 cttttaagtttgtaaacgttttcaatttagtcattctgttaaccaaa 12774319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 17400633 - 17400711
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||| ||  ||||||| || |||| || |||||| ||| ||||||||||||||||||||||| ||||| ||||    
T  17400633 ggtcctttaagttcttttgatctcacataagtcctttaaggttgcaaacgttttcaatttagttcttcagttaaccaaa 17400711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 10827351 - 10827286
Alignment:
Q  139 tcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttc 204  Q
    |||||||||||| |||| ||||| | || || ||||||||||||||||||||| ||||||| ||||    
T  10827351 tcctttaaattattttggtcacaaacaagtcctttaagtttgtaaacgttttcgatttagtccttc 10827286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 12713100 - 12713055
Alignment:
Q  170 ttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||    
T  12713100 ttttaagtttgtaaacgttttcaatttagtcattctgttaaccaaa 12713055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 38682727 - 38682772
Alignment:
Q  181 taaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||||    
T  38682727 taaacattttcaatttagttcttctattaatcaaactttacaaaaa 38682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 540
Target Start/End: Complemental strand, 7209987 - 7209911
Alignment:
Q  464 cacttaactgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||||| || | ||||||| |||||||||  |||| ||||||| |  ||||||||||||| |||||||||||||||    
T  7209987 cacttaattgtcacatcatcgtttttgtaatgtttggttaacataagaactaaattgaaaacgtttacaaacttaaa 7209911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 20927899 - 20928007
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||| ||| |||||  ||||| || |||| ||||| ||| |||| |||||  ||| |||||||||||||||||| ||||| ||||||| |    
T  20927899 cataagtcctttaaatttgaggtttgtaataaattggtcatttaagttattttggtcacaagtaagtcttttaagtttgtaaacattttcgatttagtcc 20927998  T
Q  202 ttctgttaa 210  Q
    |||| ||||    
T  20927999 ttctattaa 20928007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 33491727 - 33491683
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||||    
T  33491727 tttaagttcgtagacgttttcaatttagttcttctgttaaccaaa 33491683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 15207603 - 15207698
Alignment:
Q  84 atataagctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagttt 179  Q
    |||||||||||||||  ||| | ||||||||||||| | ||| |||||| || | |||||||| ||| ||||| |||| | ||||| |||||||||    
T  15207603 atataagctaaattatttcacaggtcttttaagttttatgtttataatagattgatcctttaagttattttgaacacacaaaaatcctttaagttt 15207698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 540
Target Start/End: Complemental strand, 35188098 - 35188023
Alignment:
Q  465 acttaactgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||||| |||| ||||||| ||||| |||| |||||||||||| |  | |||||| |||| |||||||||||||||    
T  35188098 acttaattgccacatcatcgtttttataacgtttgattaacataaacagtaaattaaaaatgtttacaaacttaaa 35188023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 4942991 - 4943049
Alignment:
Q  141 ctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||||||||| |||||||| | |||| || ||||||||||||||| |||| ||||||||    
T  4942991 ctttaaattattttgatcatacataagtcctttaagtttgtaaacatttttaatttagt 4943049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 12713055 - 12713100
Alignment:
Q  496 tttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    |||| ||||||  |||||||||||||||| ||||||||||||||||    
T  12713055 tttggttaacagaatgactaaattgaaaacgtttacaaacttaaaa 12713100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 12774319 - 12774364
Alignment:
Q  496 tttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    |||| ||||||  |||||||||||||||| ||||||||||||||||    
T  12774319 tttggttaacagaatgactaaattgaaaacgtttacaaacttaaaa 12774364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 23661971 - 23662028
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||| ||| |||| ||||| |||| ||||||||||||||||| ||||| ||||||||    
T  23661971 tttaagttattttggtcacacataagtcttttaagtttgtaaaagttttaaatttagt 23662028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 23796599 - 23796542
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||| ||| |||| ||||| |||| ||||||||||||||||| ||||| ||||||||    
T  23796599 tttaagttattttggtcacacataagtcttttaagtttgtaaaagttttaaatttagt 23796542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 37642888 - 37642945
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||| ||| |||| || || ||||||| ||||||||||||||||||||| |||||||    
T  37642888 tttaagttattttggtctcaaataaatcctttaagtttgtaaacgttttcgatttagt 37642945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Original strand, 4943082 - 4943114
Alignment:
Q  509 atgactaaattgaaaaagtttacaaacttaaaa 541  Q
    |||||||||||||||| ||||||||||||||||    
T  4943082 atgactaaattgaaaatgtttacaaacttaaaa 4943114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 4943238 - 4943166
Alignment:
Q  108 tcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttg 180  Q
    |||||||||||| || ||  ||| |||| ||| |||||||||| |||||||||| |||| || ||||||||||    
T  4943238 tcttttaagtttgagatttgtaacatattggtactttaaattattttgatcacacataagtcctttaagtttg 4943166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 16327265 - 16327221
Alignment:
Q  496 tttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||| ||||||| | |||||||||||||| |||||||||||||||    
T  16327265 tttggttaacataaggactaaattgaaaacgtttacaaacttaaa 16327221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 35812269 - 35812181
Alignment:
Q  92 taaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttg 180  Q
    |||||||||||||  ||| ||||| ||||| |||  ||||| || |||||||||||||| |||| ||||  |||| || ||||||||||    
T  35812269 taaattacatcatgagtcctttaaatttaaagtttgtaatagattggtcctttaaattattttggtcacgcataagtcatttaagtttg 35812181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 171 - 380
Target Start/End: Original strand, 40119579 - 40119788
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtggtagttatgtttgt 270  Q
    ||||||||| ||||||||||||||||||| ||| |||||| |||| |||||||||   ||||| | | | ||||||||||||||||| ||||| ||||||    
T  40119579 tttaagtttataaacgttttcaatttagtccttatgttaaccaaatattacaaaatcaatgatgtgacaattaagtgtatgatgtggcagttaagtttgt 40119678  T
Q  271 aaatgacggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggttcataa 370  Q
    ||  || | |||||| |||||||||||||||||||| |||||||||| |||| |||||||||||||| |||| |||||||||| ||||||||||||||||    
T  40119679 aagcgatgaacattaggatgtaaattctcatcaaagaaagagttcaaggaagttgttatcaattattttgtgaataatggcttcgatttgaggttcataa 40119778  T
Q  371 agaatgacaa 380  Q
    ||||||||||    
T  40119779 agaatgacaa 40119788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 17231970 - 17232113
Alignment:
Q  90 gctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttt 189  Q
    ||||||||||||||   ||  ||||||||| |||||  ||| | ||| ||| ||||| ||| |||||||||| |||| ||||||||||||||||||||||    
T  17231970 gctaaattacatcagcagttctttaagtttgaggtttgtaacagataagtcttttaagttattttgatcacacataagtcttttaagtttgtaaacgttt 17232069  T
Q  190 tcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  17232070 tcaatttagttcttctgttaaccaaacattacaaaaacgatgat 17232113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 12592273 - 12592364
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||| ||| |||| ||||| ||||||||| |||||||||||||||||||||||||||  |||||| || ||||||||||||||| ||||||    
T  12592273 tttaagttattttggtcacacataaatcttgtaagtttgtaaacgttttcaatttagtcattctgtcaaccaaacattacaaaaacgatgat 12592364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 55617566 - 55617504
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||||||||||| |||||||||||||| ||| ||||||| |||||||||||||| ||||||    
T  55617566 tttaagtttgtaaatgttttcaatttagtccttttgttaattaaacattacaaaaacgatgat 55617504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 55624870 - 55624808
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||||||||||| |||||||||||||| ||| ||||||| |||||||||||||| ||||||    
T  55624870 tttaagtttgtaaatgttttcaatttagtccttttgttaattaaacattacaaaaacgatgat 55624808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 40120705 - 40120762
Alignment:
Q  393 agttggttgcaaggatgaatgcccttggattgttttatgttctaagatatctaatgag 450  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||| |||||||||    
T  40120705 agttggttggaaggatgaatgtctttggattgttttatgttctaagatgtctaatgag 40120762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 12498674 - 12498778
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| |||||||||||||||||||   ||||||| | || ||||| ||| |||| ||||| ||||||| ||||||||||||||   |||||||||||| |    
T  12498674 cataagtcttttaagtttaaggtttgcaatatattgatcttttaagttattttggtcacacataaatcctttaagtttgtaaaaaatttcaatttagtcc 12498773  T
Q  202 ttctg 206  Q
    |||||    
T  12498774 ttctg 12498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 45787277 - 45787193
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||| ||| |||||||||| |||| | ||||||||||| ||||||||||||||||||  |||| |||| |||| ||||||||||    
T  45787277 tttaagttattttgatcacacataagttttttaagtttgcaaacgttttcaatttagtcattcttttaaccaaatattacaaaaa 45787193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 51950564 - 51950655
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||| ||| |||| ||||| |||| || |||||||||||||| |||||||||||||| ||||| ||||  | || ||||||||||||||||    
T  51950564 tttaagttattttggtcacacataagtcctttaagtttgtaaatgttttcaatttagtccttctattaacgagacgttacaaaaatgatgat 51950655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 2470182 - 2470060
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    ||||| ||| |||||  |||||||| |||||||||| ||| |||| ||||| |||| |||||| ||| |||| || ||| | ||||||| ||| ||||||    
T  2470182 tttaaatttgaggtttgtaatatattggtcctttaagttattttggtcacacataagtctttttagtatgtatacctttccgatttagtccttatgttaa 2470083  T
Q  211 tcaaacattacaaaaatgatgat 233  Q
     ||||| ||| ||||||||||||    
T  2470082 ccaaacgttaaaaaaatgatgat 2470060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 40395162 - 40395256
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttct 205  Q
    ||||||||| |||||  ||| ||||  || |||||| ||| |||| ||||| ||||||||||||||||||||| |||||||||||| || |||||    
T  40395162 tttaagtttgaggtttgtaacatattagttctttaagttattttggtcacacataaatcttttaagtttgtaagcgttttcaattttgtccttct 40395256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 24684142 - 24684203
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttctt 203  Q
    ||||| ||| |||| | ||| ||||||||||||||||||||||||||||||||||| |||||    
T  24684142 tttaagttattttggttacacataaatcttttaagtttgtaaacgttttcaatttatttctt 24684203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 2469962 - 2470048
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||| || ||  |||||||| |||||||||||||| |||| |||||||||| ||||| |||||||||||| ||||| |||||||    
T  2469962 tttaagtttgagctttgtaatatattggtcctttaaatta-tttggtcacatataagtcttt-aagtttgtaaaccttttcgatttagt 2470048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 26782567 - 26782479
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||| |||||  |||||||| | |  ||||| ||| |||  |||||||||| ||||||||||||||||| ||||||||||||||    
T  26782567 tttaagtttgaggtttgtaatatattgattttttaagttatttttgtcacatataagtcttttaagtttgtaaaagttttcaatttagt 26782479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 41083117 - 41083205
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||| | |||  ||| |||| |||||||||| ||| |||||||||| |||| || |||||||||||||||||||  ||||||||    
T  41083117 tttaagtttgaagtttgtaacatattggtcctttaagttattttgatcacacataagtcctttaagtttgtaaacgtttcaaatttagt 41083205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 41083336 - 41083240
Alignment:
Q  103 atatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||| ||||||||| |||||| ||| | || |||| ||||| ||| || | ||||| |||| || ||||||||||||||||||||| |||||||    
T  41083336 atatgtcatttaagtttgaggttcgtaacagattggtcttttaagttatttcggtcacacataagtcctttaagtttgtaaacgttttcgatttagt 41083240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 45038450 - 45038362
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||| |||||  ||| | || |||||||||| ||| |||| ||||| |||| || ||||||||||||||||||||| |||||||    
T  45038450 tttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcgatttagt 45038362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 25056006 - 25056061
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||||| |||||| |||||| ||||||| |||||||||| |||||||||||||||    
T  25056006 tttaagtatgtaaatgttttccatttagtccttctgttaaccaaacattacaaaaa 25056061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 41519264 - 41519319
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    |||||||||||||||||||||||||| ||  || |||||| |||||||||||||||    
T  41519264 tttaagtttgtaaacgttttcaatttggtctttatgttaaccaaacattacaaaaa 41519319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 12498866 - 12498800
Alignment:
Q  139 tcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttct 205  Q
    |||||||||||| || | ||||| |||| |||||||| ||||||||||||||| ||||||| |||||    
T  12498866 tcctttaaattatttcggtcacacataagtcttttaaatttgtaaacgttttcgatttagtccttct 12498800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 541
Target Start/End: Complemental strand, 17232127 - 17232050
Alignment:
Q  464 cacttaactgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    ||||| |||||| ||||||| |||||||||  |||| ||||||  |  ||||||||||||| ||||||||||||||||    
T  17232127 cacttgactgccacatcatcgtttttgtaatgtttggttaacagaagaactaaattgaaaacgtttacaaacttaaaa 17232050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 2787941 - 2788061
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| |||||||||||||||  ||| ||||  ||  ||||| ||| |||| ||||| |||| || |||||||||||||| |||||||| |||||      
T  2787941 cataagtcatttaagtttaaggtttgtaacatatttgt--tttaagttattttggtcacacataagtcatttaagtttgtaaatgttttcaa-ttagtct 2788037  T
Q  202 ttctgttaatcaaacattacaaaa 225  Q
    ||||||||| |||||| |||||||    
T  2788038 ttctgttaaccaaacactacaaaa 2788061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 24369186 - 24369238
Alignment:
Q  181 taaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||||||| ||| |||||| ||||| ||||||| ||||||||    
T  24369186 taaacgttttcaatttagtccttttgttaaccaaacgttacaaacatgatgat 24369238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 25056108 - 25056073
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||||||||||||||||||||||||||| ||||||    
T  25056108 tttaagtttgtaaacgttttcaatttagtccttctg 25056073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 9999565 - 9999471
Alignment:
Q  110 ttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttc 204  Q
    |||||||||| |||||  ||| | || |||| ||||| ||| |||  |||||||||| || ||||| |||||||| |||||||||||||| ||||    
T  9999565 ttttaagtttgaggtttgtaacagattggtcatttaagttatttttgtcacatataagtcatttaactttgtaaaagttttcaatttagtacttc 9999471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 12697278 - 12697240
Alignment:
Q  195 ttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  12697278 ttagttcttctattaatcaaacattacaaaaacgatgat 12697240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 26782382 - 26782459
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||| ||| |||| |||||  ||| |||||||||||||||||  ||||||||||||| ||| |||||| ||||    
T  26782382 ggtcctttaagttattttggtcacac-taagtcttttaagtttgtaaaaattttcaatttagtccttatgttaaccaaa 26782459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 40119633 - 40119579
Alignment:
Q  486 ttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||||||| ||||| ||||||| | |||||||||||||| ||||| |||||||||    
T  40119633 ttttgtaatatttggttaacataaggactaaattgaaaacgtttataaacttaaa 40119579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 40147074 - 40147136
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||| ||||||| ||||||| |||| | ||| |||||| ||||||||||||||| ||||||    
T  40147074 tttaaggttgtaaatgttttcagtttattccttatgttaaccaaacattacaaaaacgatgat 40147136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 2470266 - 2470173
Alignment:
Q  87 taagctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttg 180  Q
    |||||||||||||| ||   ||| ||| |||||||||||  ||||| || |||||||||| ||| |||| |||||||||| || ||||| ||||    
T  2470266 taagctaaattacaccaggggtcctttcagtttaaggtttgtaatagattggtcctttaagttattttggtcacatataagtcctttaaatttg 2470173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 12592365 - 12592304
Alignment:
Q  477 catcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaactta 538  Q
    ||||||| |||||||||  |||| || |||  |||||||||||||||| |||||||||||||    
T  12592365 catcatcgtttttgtaatgtttggttgacagaatgactaaattgaaaacgtttacaaactta 12592304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 53863594 - 53863497
Alignment:
Q  109 cttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||||||||| ||| |  ||| | || |||||||||| ||| |||| |||   |||| || |||||||||||||| |||||||||||||| ||||||    
T  53863594 cttttaagtttgagggttgtaacaaattggtcctttaagttattttggtcatgcataagtcctttaagtttgtaaaagttttcaatttagtccttctg 53863497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 11884863 - 11884811
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttt 189  Q
    ||||||||||||||||||| ||||| |||| |  |||||||||||||| ||||    
T  11884863 ggtcctttaaattaatttggtcacaaataagttctttaagtttgtaaatgttt 11884811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 12592412 - 12592368
Alignment:
Q  163 ataaatcttttaagtttgtaaacgttttcaatttagttcttctgt 207  Q
    |||| ||||||||||||||||| |||||| ||||||| |||||||    
T  12592412 ataagtcttttaagtttgtaaaagttttcgatttagtccttctgt 12592368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 45787193 - 45787249
Alignment:
Q  485 tttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    ||||||||| ||||| |||| |  |||||||||||||||| |||| |||||||||||    
T  45787193 tttttgtaatatttggttaaaagaatgactaaattgaaaacgtttgcaaacttaaaa 45787249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 46196333 - 46196293
Alignment:
Q  170 ttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    ||||||||||| |||| ||||||||||||| ||||||||||    
T  46196333 ttttaagtttgcaaacattttcaatttagtccttctgttaa 46196293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 51950755 - 51950667
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||  ||||| | |||| || ||| |||||| |||||||| | | | |||| || ||||||||||||||| |||||||||||||    
T  51950755 tttaagttcgaggtttacaataaattggttctttaagttaatttggttatacataagtcctttaagtttgtaaacattttcaatttagt 51950667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 265 - 455
Target Start/End: Complemental strand, 22026689 - 22026499
Alignment:
Q  265 gtttgtaaatgacggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggt 364  Q
    |||||||||||| ||||| || |||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||||| | || ||||||||||    
T  22026689 gtttgtaaatgaaggacagtaagatgtaaattctcatcaaaaaaagagttcaatgaagttgttatcaattattttgtgtataattgtttcgatttgaggt 22026590  T
Q  365 tcataaagaatgacaatgaaagagtcatagttggttgcaaggatgaatgcccttggattgttttatgttctaagatatctaatgaggatac 455  Q
    | ||||||||| ||||| | || |  | ||||  |||||| |||| ||| | |||| |||||||||||| ||||||| || ||||||||||    
T  22026589 tgataaagaatcacaattagagggcgagagtttattgcaaagatggatgtctttggtttgttttatgttataagataccttatgaggatac 22026499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 4048265 - 4048387
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    ||||||| | |||||  ||| |||| |||||||||| |||   || ||||||||||||| || ||||||||||||||||||||||||||  || ||||||    
T  4048265 tttaagtctgaggtttgtaacatattggtcctttaagttataatggtcacatataaatccttgaagtttgtaaacgttttcaatttagtcattttgttaa 4048364  T
Q  211 tcaaacattacaaaaatgatgat 233  Q
     ||||||||||||||||||||||    
T  4048365 ccaaacattacaaaaatgatgat 4048387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 29019342 - 29019415
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    ||||| ||| |||| ||||| |||| || |||||||||||||||||||||||||||||  ||||||||||||||    
T  29019342 tttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaatttagtcattctgttaatcaaa 29019415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 464 - 540
Target Start/End: Original strand, 23164037 - 23164113
Alignment:
Q  464 cacttaactgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||||||||| | ||||||| ||||||||||||||||||||||  || | ||||||||||| || ||||||||||||    
T  23164037 cacttaactgtcacatcatcgtttttgtaacatttgattaacaacataaataaattgaaaatgtatacaaacttaaa 23164113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 6068694 - 6068829
Alignment:
Q  90 gctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttt 189  Q
    |||||||||||||| ||||  ||||| ||| |||||  ||||| ||| ||||||||||||| ||| |||| | ||||||  | ||||||| |||||| ||    
T  6068694 gctaaattacatcagatgttctttaaatttgaggtttgtaataaatatgtcctttaaattattttaatcatacataaattctataagtttataaacgatt 6068793  T
Q  190 tcaatttagttcttctgttaatcaaacattacaaaa 225  Q
    ||||||||||  || |||||| | ||| ||||||||    
T  6068794 tcaatttagtcattttgttaacccaacgttacaaaa 6068829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 22026377 - 22026464
Alignment:
Q  138 gtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaa 225  Q
    ||||||||| ||| ||| |||||||| |   |||||||||||||||||||||| |||||||| ||| |||||| ||||| ||||||||    
T  22026377 gtcctttaatttattttaatcacatacagtacttttaagtttgtaaacgtttttaatttagtccttatgttaaccaaacgttacaaaa 22026464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 30869674 - 30869559
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    ||||||||| |||||  ||| | || |||||||||| ||| ||| |||||   ||| || ||||||||||||||| |||||||||||||  || ||||||    
T  30869674 tttaagtttgaggtttgtaacagattggtcctttaagttatttttatcacgcgtaagtcctttaagtttgtaaacattttcaatttagtctttttgttaa 30869575  T
Q  211 tcaaacattacaaaaa 226  Q
     |||||||||||||||    
T  30869574 ccaaacattacaaaaa 30869559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 27280737 - 27280799
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||||||||| |||||||  ||| ||||| ||||||||||||||| ||||||    
T  27280737 tttaagtttgtaaacgttttcgatttagtcattcagttaaccaaacattacaaaaacgatgat 27280799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 11975501 - 11975606
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||| |||||  ||| |||| | |||||||| ||| | || ||||| |||| || ||||||||| ||||||||||||||||||| |    
T  11975501 cataagtcctttaagtttgaggtttgtaacatattgatcctttaagttattgtggtcacacataagtcctttaagtttttaaacgttttcaatttagtcc 11975600  T
Q  202 ttctgt 207  Q
    ||||||    
T  11975601 ttctgt 11975606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 537
Target Start/End: Complemental strand, 4048388 - 4048328
Alignment:
Q  477 catcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaactt 537  Q
    |||||||||||||||||  |||| ||||||  |||||||||||||||| ||||||||||||    
T  4048388 catcatcatttttgtaatgtttggttaacaaaatgactaaattgaaaacgtttacaaactt 4048328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 22750370 - 22750466
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttag 198  Q
    |||| ||| ||||| ||| |||||  |||||||| | || ||||||||| |||  ||| | ||||||||||||||||||| ||||||||||||||||    
T  22750370 cataagtcatttaattttgaggtttgtaatatattgatcatttaaattatttttgtcatacataaatcttttaagtttgtgaacgttttcaatttag 22750466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 23164113 - 23164030
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatctaatagttaagtgtatgatg 254  Q
    |||||||||||| || ||||||||||| || |  |||||||||||  ||||||||| |||||| | | ||||||||||||||||    
T  23164113 tttaagtttgtatacattttcaatttatttatgttgttaatcaaatgttacaaaaacgatgatgtgacagttaagtgtatgatg 23164030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 26978283 - 26978402
Alignment:
Q  107 gtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||||||| |||||||||  ||||| |||||||  ||||| || |||| | ||| | || || |||||||||||| ||||||||||||||   |||| |    
T  26978283 gtcttttaaatttaaggtttgtaataaataggtctgttaaaatattttggtaacacacaagtcctttaagtttgtagacgttttcaatttaaaccttcgg 26978382  T
Q  207 ttaatcaaacattacaaaaa 226  Q
    |||| ||||| |||||||||    
T  26978383 ttaaccaaacgttacaaaaa 26978402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 40951918 - 40951793
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg---t 207  Q
    ||||||||| |||||  ||||| || | || ||||| ||| |||| ||||| ||||||| ||||||||||||||| ||||| |||||||  || ||   |    
T  40951918 tttaagtttgaggtttgtaatagattgatcatttaagttattttggtcacacataaatcatttaagtttgtaaacattttctatttagtcattatgtaat 40951819  T
Q  208 taatcaaacattacaaaaatgatgat 233  Q
    ||| ||||||||||||||| ||||||    
T  40951818 taaccaaacattacaaaaacgatgat 40951793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 6694804 - 6694718
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaattta 197  Q
    ||||||||| |||||  ||| |||| |||||||||| ||| |||| ||||| |||| || ||||||||| ||||||||||| |||||    
T  6694804 tttaagtttgaggtttgtaacatattggtcctttaagttattttggtcacacataagtcctttaagtttataaacgttttcgattta 6694718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 3198337 - 3198398
Alignment:
Q  174 aagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatct 235  Q
    |||||||||||| ||||||||||| |  | ||||||| ||||||||||||||| ||||||||    
T  3198337 aagtttgtaaacattttcaatttaatcatcctgttaaccaaacattacaaaaacgatgatct 3198398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 26186008 - 26185911
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttg----taaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgat 230  Q
    |||||||||||||| |||| ||||| |||| || |||||| |||    ||||||||||  ||||||  |||||||||| ||||||||| |||||||||    
T  26186008 ggtcctttaaattattttggtcacacataagtcctttaagattgattgtaaacgttttttatttagaccttctgttaaccaaacattataaaaatgat 26185911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 29019415 - 29019371
Alignment:
Q  496 tttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||||||||||  |||||||||||||||| |||||||||||||||    
T  29019415 tttgattaacagaatgactaaattgaaaacgtttacaaacttaaa 29019371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 3198396 - 3198337
Alignment:
Q  478 atcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaactt 537  Q
    |||||| |||||||||  |||| |||||| ||||| ||||||||||| ||||||||||||    
T  3198396 atcatcgtttttgtaatgtttggttaacaggatgattaaattgaaaatgtttacaaactt 3198337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 541
Target Start/End: Complemental strand, 22026478 - 22026409
Alignment:
Q  471 ctgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    ||||| ||||||| |||| ||||| |||| ||||||| | ||||||||| |||| ||||||||||||||||    
T  22026478 ctgccacatcatcgtttt-gtaacgtttggttaacataaggactaaattaaaaacgtttacaaacttaaaa 22026409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 29710568 - 29710490
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||| ||| |||  ||||| |||| || ||||||||||||||  ||||||||||||| ||| |||||| ||||    
T  29710568 ggtcctttaagttattttcgtcacacataagtcatttaagtttgtaaaacttttcaatttagtccttatgttaaccaaa 29710490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 540
Target Start/End: Complemental strand, 27280806 - 27280737
Alignment:
Q  471 ctgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||| ||||||| |||||||||  |||| |||||   |||||||||| ||||| |||||||||||||||    
T  27280806 ctgccacatcatcgtttttgtaatgtttggttaactgaatgactaaatcgaaaacgtttacaaacttaaa 27280737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 27576579 - 27576510
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    |||||||||  ||| |||| ||||| |||| || |||||||||||||| ||||||||||| || ||||||    
T  27576579 ggtcctttaggttattttggtcacacataagtcctttaagtttgtaaaagttttcaattttgtccttctg 27576510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 6694585 - 6694700
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| |||||||||  ||||  ||||| || | |||||||| ||| |||| | ||| |||| || |||||||||| ||||||||||||||||||      
T  6694585 cataagtcctttaagtttgtggtttgtaatagattgatcctttaagttattttgtt-acacataagtcctttaagtttgcaaacgttttcaatttagtct 6694683  T
Q  202 ttctgttaatcaaacat 218  Q
    || |||||| |||||||    
T  6694684 ttatgttaaccaaacat 6694700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 278 - 440
Target Start/End: Original strand, 5197507 - 5197669
Alignment:
Q  278 ggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggttcataaagaatga 377  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||   ||||||||||||||||| ||||    
T  5197507 ggacattaggatgtaaattctcatcaaaggaagagttcaaggaagctgttataaattattctgtgtgtaatggctacaatttgaggttcataaaggatga 5197606  T
Q  378 caatgaaagagtcatagttggttgcaaggatgaatgcccttggattgttttatgttctaagat 440  Q
     ||  | || || | ||||||||| |||||   ||| |||||||||| |||||||||||||||    
T  5197607 taaaaagagggttagagttggttgtaaggacagatgtccttggattgctttatgttctaagat 5197669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 2761695 - 2761577
Alignment:
Q  92 taaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttc 191  Q
    |||||||||||||| ||| ||||| ||| |  || |||||| || |||| ||||  ||| |||||||||| ||||||| |||||||||||||||||||||    
T  2761695 taaattacatcataggtcctttaaatttgaaatttataataaattggtcttttaggttattttgatcacacataaatcctttaagtttgtaaacgttttc 2761596  T
Q  192 aatttagttcttctgttaa 210  Q
    |||||||| ||||||||||    
T  2761595 aatttagtccttctgttaa 2761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 3848530 - 3848666
Alignment:
Q  90 gctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttt 189  Q
    |||||||||||||||  ||| ||||||||| |||||  ||| | ||||||| ||||| ||| |||| | ||||||||  | |||||||||||||||| ||    
T  3848530 gctaaattacatcattggtcctttaagtttgaggtttgtaaaaaataggtcatttaagttagtttgcttacatataatacctttaagtttgtaaacggtt 3848629  T
Q  190 tcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    |||||||||| ||| |||||| ||||  |||||||||    
T  3848630 tcaatttagtccttttgttaaccaaatgttacaaaaa 3848666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 21598729 - 21598613
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| |||||||||  ||||  ||| |||| |||||||||| ||| |||| ||||| |||| || ||||||||||||||||||||||||||||| |    
T  21598729 cataagtcctttaagtttgtggtttgtaacatattggtcctttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaatttagtcc 21598630  T
Q  202 ttctgttaatcaaacat 218  Q
    || |||||| |||||||    
T  21598629 ttatgttaaccaaacat 21598613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 24059719 - 24059850
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||| ||||| |||| | || | || ||||||||| |||| ||||| |||| || |||||||||||||||||||| ||| |||| |    
T  24059719 cataagtcctttaagtttgaggtttataacagattgatcatttaaattattttggtcacacataagtcctttaagtttgtaaacgtttttaatctagtcc 24059818  T
Q  202 ttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||| |||| ||||  ||||||||||||||||    
T  24059819 ttctattaaccaaaagttacaaaaatgatgat 24059850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 17136937 - 17137011
Alignment:
Q  141 ctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||| ||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  17136937 ctttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcaatttagtccttttgttaaccaaa 17137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 17342724 - 17342627
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||| ||||||||||||| |||||  ||| || | |||||||||| ||| || | ||||| |||| || |||||||||||||||||||||||||||||    
T  17342724 cataagtcttttaagtttgaggtttgtaacatgttggtcctttaagttatttcggtcacacataagtcctttaagtttgtaaacgttttcaatttagt 17342627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 2761495 - 2761559
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||| ||| |||||||||| |||| || ||||||||||||||||||||||||||||| ||||||    
T  2761495 tttaagttattttgatcacacataagtcctttaagtttgtaaacgttttcaatttagtccttctg 2761559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 9982654 - 9982742
Alignment:
Q  92 taaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttg 180  Q
    |||||||||||||| ||||||||||||| |||||  ||| ||||   |||||||||||| |||||||||| |||| || ||||||||||    
T  9982654 taaattacatcataggtcttttaagtttgaggtttgtaacatattcatcctttaaattattttgatcacacataagtcctttaagtttg 9982742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 35225621 - 35225561
Alignment:
Q  173 taagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||| ||||||||||| ||| ||||||  |||||||||||||||||||||    
T  35225621 taagtttgtaaacgtattcaatttagtccttttgttaactaaacattacaaaaatgatgat 35225561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 9982785 - 9982829
Alignment:
Q  163 ataaatcttttaagtttgtaaacgttttcaatttagttcttctgt 207  Q
    |||| |||||||||||||||||||||||||||||||| |||||||    
T  9982785 ataagtcttttaagtttgtaaacgttttcaatttagtccttctgt 9982829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 35050626 - 35050694
Alignment:
Q  138 gtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||||||| ||| |||  ||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  35050626 gtcctttaagttatttttgtcacacataaatcttttaagtttataaacgttttcgatttagtccttctg 35050694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 21598499 - 21598602
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||| |||||  ||| | || |||||||||| ||| ||||||| || |||| || ||||||||| ||||||||||| ||||||| |    
T  21598499 cataagtcctttaagtttgaggtttgtaacagattggtcctttaagttattttgatcccacataagtcctttaagtttataaacgttttcgatttagtcc 21598598  T
Q  202 ttct 205  Q
    ||||    
T  21598599 ttct 21598602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 35225461 - 35225548
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttag 198  Q
    |||||||||||||||  ||| | || |||||||||| ||| | |||||||| |||| |  ||||||||||||||||||||| ||||||    
T  35225461 tttaagtttaaggtttgtaacagattggtcctttaagttattctgatcacacataagttctttaagtttgtaaacgttttcgatttag 35225548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 540
Target Start/End: Complemental strand, 364176 - 364108
Alignment:
Q  472 tgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||| |||||||||||||||||| |||| |||| |  |||| ||| ||||||| |||||||||||||||    
T  364176 tgccacatcatcatttttgtaacgtttggttaatagaatgattaagttgaaaatgtttacaaacttaaa 364108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 3848666 - 3848611
Alignment:
Q  485 tttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||||||||||||| ||||||  | |||||||||||||  |||||||||||||||    
T  3848666 tttttgtaacatttggttaacaaaaggactaaattgaaaccgtttacaaacttaaa 3848611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 364108 - 364170
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||| ||||||| ||| |  |||| |||| ||||| ||||||||||||||||    
T  364108 tttaagtttgtaaacattttcaacttaatcattctattaaccaaacgttacaaaaatgatgat 364170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 9982953 - 9982841
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||||  |||  ||| |||| |||||||||| ||  |||  || || |||| || ||||||||||||||| ||||||||||||| |    
T  9982953 cataagtcctttaagtttagagtttgtaacatattggtcctttaagttctttttgtctcacataagtcctttaagtttgtaaac-ttttcaatttagtcc 9982855  T
Q  202 ttctgttaatcaaa 215  Q
    ||||||||| ||||    
T  9982854 ttctgttaaccaaa 9982841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 13812226 - 13812335
Alignment:
Q  90 gctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttt 189  Q
    |||||||||||||| | ||| ||||||||| ||||| |||| | ||  || || ||||||| |||| | ||| |||| || ||||| |||||||| ||||    
T  13812226 gctaaattacatcagaagtcatttaagtttgaggtttataacaaattagttctataaattattttgttaacacataagtcatttaaatttgtaaatgttt 13812325  T
Q  190 tcaatttagt 199  Q
    || |||||||    
T  13812326 tcgatttagt 13812335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 540
Target Start/End: Complemental strand, 24059857 - 24059788
Alignment:
Q  471 ctgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||| |||||||||||||||||| |||| |||| |  | ||||| ||| |||| |||||||||||||||    
T  24059857 ctgccacatcatcatttttgtaacttttggttaatagaaggactagattaaaaacgtttacaaacttaaa 24059788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 31091261 - 31091317
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||| ||| |||||||| | |||||| |||||| |||||||||||||||||||||||    
T  31091261 tttaagttattttgatcaaacataaat-ttttaaatttgtaaacgttttcaatttagt 31091317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 21598616 - 21598660
Alignment:
Q  496 tttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||| ||||||| | |||||||||||||| |||||||||||||||    
T  21598616 tttggttaacataaggactaaattgaaaacgtttacaaacttaaa 21598660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 278 - 440
Target Start/End: Original strand, 3378912 - 3379074
Alignment:
Q  278 ggacattatgatgtaaattctcatcaaaggaagagttcaatgaagctgttatcaattattatgtgtataatggctttgatttgaggttcataaagaatga 377  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||   ||||||||||||||||| ||||    
T  3378912 ggacattaggatgtaaattctcatcaaaggaagagttcaaggaagctgttataaattattctgtgtgtaatggctacaatttgaggttcataaaggatga 3379011  T
Q  378 caatgaaagagtcatagttggttgcaaggatgaatgcccttggattgttttatgttctaagat 440  Q
     ||  | || || | ||||||||| |||||   ||| |||||||||| |||||||||||||||    
T  3379012 taaaaagagggttagagttggttgtaaggacagatgaccttggattgctttatgttctaagat 3379074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 47891373 - 47891272
Alignment:
Q  132 atataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatg 231  Q
    |||| |||||||||| ||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| ||||    
T  47891373 atattggtcctttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcaatttagtccttatgttaaccaaacgttacaaaaacgatg 47891274  T
Q  232 at 233  Q
    ||    
T  47891273 at 47891272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 25848546 - 25848453
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgat 230  Q
    |||||||||| ||| |||| ||||| |||  || |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  25848546 ggtcctttaagttattttggtcacacatatgtcctttaagtttgtaaatgttttcaatttagtccttctgttaaccaaacattacaaaaatgat 25848453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 27768410 - 27768491
Alignment:
Q  152 tttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||   |||||||| ||||| ||||||||||||||||    
T  27768410 tttgatcacacataaatcctttaagtttgtaaacgttttaaatttagtcaatctgttaaccaaacgttacaaaaatgatgat 27768491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 36900157 - 36900033
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| |||||||||||||||  ||| | || | || ||||| ||| ||| ||| || ||||||| ||||||||||||||| |||||||||||||      
T  36900157 cataggtcctttaagtttaaggtttgtaagagattgatcgtttaagttattttaatctcacataaatcctttaagtttgtaaacattttcaatttagtca 36900058  T
Q  202 ttctgttaatcaaacattacaaaaa 226  Q
    ||||||||| |||||||||||||||    
T  36900057 ttctgttaaccaaacattacaaaaa 36900033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 26976379 - 26976494
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    ||||||||| |||||  ||| | ||||||||| ||| ||| |||| | ||| | ||||||||||||||||||| ||||||||||||||  ||||| ||||    
T  26976379 tttaagtttgaggtttgtaacagataggtcctctaagttattttggttacacaaaaatcttttaagtttgtaatcgttttcaatttagaccttctattaa 26976478  T
Q  211 tcaaacattacaaaaa 226  Q
     |||||||||||||||    
T  26976479 ccaaacattacaaaaa 26976494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 40286463 - 40286401
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  40286463 tttaagtttgtaaacattttcaatttagttcttctattaaccaaacattacaaaaacgatgat 40286401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 50332522 - 50332584
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||||    
T  50332522 ggtcctttaagttattttgatcacatataagtcatttaagtttgtaaacgttttcaatttagt 50332584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 5442545 - 5442641
Alignment:
Q  138 gtcctttaaattaatttgatcacatataaatcttttaag-tttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||| ||| |||| ||||| |||| ||||||||  |||||||| |||||||||||||||||| |||||| | ||||||||||||| ||||||    
T  5442545 gtcctttaagttattttggtcacagataagtcttttaaaatttgtaaatgttttcaatttagttcttatgttaacccaacattacaaaaacgatgat 5442641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 47573987 - 47573875
Alignment:
Q  92 taaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttc 191  Q
    ||||||||| |||| ||||||||||||| |||||  ||||| || | |||||||| ||| |||| |||||||||| || |||||||| ||||||||||||    
T  47573987 taaattaca-cataagtcttttaagtttgaggtttgtaatagattgatcctttaagttattttggtcacatataagtc-tttaagttcgtaaacgttttc 47573890  T
Q  192 aatttagttcttctg 206  Q
    |||||| | ||||||    
T  47573889 aatttaatccttctg 47573875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 51833421 - 51833359
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||| ||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||    
T  51833421 tttaagattgtaaatgttatcaatttagttcttctgttaaccaaacgttacaaaaatgatgat 51833359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 3169696 - 3169785
Alignment:
Q  91 ctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttg 180  Q
    |||||||||| |||||||  |||||||||||||||  ||||| || ||| |||||| ||| |||  ||||||||||||||||||||||||    
T  3169696 ctaaattacaccatatgttctttaagtttaaggtttgtaatagattggttctttaagttattttagtcacatataaatcttttaagtttg 3169785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 18020105 - 18019992
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||||||||| |||| | || |||| ||||| ||| |||| | ||| |||| ||||||||||||| |||| ||||||||||||| |    
T  18020105 cataagtcctttaagtttaaggtttataacagattggtcgtttaagttattttggttacacataagtcttttaagtttgcaaaccttttcaatttagtcc 18020006  T
Q  202 ttctgttaatcaaa 215  Q
    || |||||| ||||    
T  18020005 ttatgttaaccaaa 18019992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 477 - 541
Target Start/End: Original strand, 47891271 - 47891335
Alignment:
Q  477 catcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    ||||||| |||||||||| |||| ||||||| | |||||||||||||| ||||||||||||||||    
T  47891271 catcatcgtttttgtaacgtttggttaacataaggactaaattgaaaacgtttacaaacttaaaa 47891335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 32186716 - 32186625
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||| ||| |||| | ||| ||||||  |||||||||||||||||||||||||||||  || |||||| ||||| | ||||||||||||||    
T  32186716 tttaagttattttggttacacataaattctttaagtttgtaaacgttttcaatttagtctttttgttaaccaaacgtaacaaaaatgatgat 32186625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 47573672 - 47573767
Alignment:
Q  85 tataagctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttg 180  Q
    |||| |||||||||||||||  ||| ||||||||| |||||  ||| ||||  ||||||||||||| ||| |||||| |||| |||||||||||||    
T  47573672 tataggctaaattacatcatgggtcctttaagtttgaggtttgtaacatattagtcctttaaattatttttatcacacataagtcttttaagtttg 47573767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 14624275 - 14624225
Alignment:
Q  157 tcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgt 207  Q
    ||||| |||| |||||||||||||||||||||||||||||| |||||||||    
T  14624275 tcacacataagtcttttaagtttgtaaacgttttcaatttaattcttctgt 14624225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 39714635 - 39714545
Alignment:
Q  109 cttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||||| |||||  ||||| || | || ||||||||| |||||| ||| |||| || ||| |||||||||||||||||||||||||    
T  39714635 cttttaagtttgaggtttgtaataaattgatcatttaaattattttgattacacataagtcatttgagtttgtaaacgttttcaatttagt 39714545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 43650073 - 43650135
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||| ||||| ||| |||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  43650073 ggtcatttaagttattttgatcacacataaatcttttaagtttgtaaacattttcgatttagt 43650135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 28813931 - 28814020
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatg 231  Q
    ||||| ||| |||| ||||| |||| || || ||||||||||||||||||||||||||  || |||||| ||||| ||||||||| ||||    
T  28813931 tttaagttattttggtcacacataagtccttcaagtttgtaaacgttttcaatttagtatttatgttaaccaaacgttacaaaaacgatg 28814020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 40209797 - 40209841
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  40209797 tttaagtttgtaaacgttttcaatttagttattctgttaaccaaa 40209841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 47069803 - 47069715
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||| |||||  ||| | || |||| ||||| | |||||  |||||||||| || |||||||||||||||||||||||||||||    
T  47069803 tttaagtttgaggtttgtaacagattggtcatttaagtgaatttcgtcacatataagtcctttaagtttgtaaacgttttcaatttagt 47069715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 25848350 - 25848445
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||||||| |||||  ||||| ||  |||| |||| ||| |||| ||||| | ||||||||||||||||||||||||| | ||||||| ||||||    
T  25848350 tttaagtttgaggtttgtaatagattagtccgttaagttattttggtcacacaaaaatcttttaagtttgtaaacgtttgcgatttagtccttctg 25848445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 27768492 - 27768429
Alignment:
Q  477 catcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||||||||||||||||| |||| ||||||   |||||||||| |||| |||||||||||||||    
T  27768492 catcatcatttttgtaacgtttggttaacagattgactaaatttaaaacgtttacaaacttaaa 27768429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 540
Target Start/End: Original strand, 32186624 - 32186687
Alignment:
Q  477 catcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||||||||||||| || |||| ||||||  | |||||||||||||| |||||||||||||||    
T  32186624 catcatcatttttgttacgtttggttaacaaaaagactaaattgaaaacgtttacaaacttaaa 32186687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 14964918 - 14964987
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    |||| ||||| ||| |||| ||||| |||| || |||||||||||||| |||||||||||||| ||||||    
T  14964918 ggtcatttaagttattttggtcacacataagtcctttaagtttgtaaaggttttcaatttagtccttctg 14964987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 40286292 - 40286397
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||| ||||||||| ||||| |||| |||| | |||||||| ||| |||| ||||| | || || ||||||||||||||  ||||| ||||||| |    
T  40286292 cataagtcctttaagtttgaggtttataacatattgttcctttaagttattttggtcacacagaagtcctttaagtttgtaaatattttcgatttagtac 40286391  T
Q  202 ttctgt 207  Q
    ||||||    
T  40286392 ttctgt 40286397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 36667354 - 36667278
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgt 187  Q
    |||||||||||||||  ||| | ||  ||||||||| ||| |||| ||||| |||| ||||||||||||||||||||    
T  36667354 tttaagtttaaggtttgtaacagatttgtcctttaagttattttggtcacacataagtcttttaagtttgtaaacgt 36667278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 43650243 - 43650147
Alignment:
Q  138 gtcctttaaattaatttgatcacatataaatcttttaag-tttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||| ||| |||| | ||| |||| || |||||| ||||||||  ||||||| ||||| ||||||||||  |||||||||||||| ||||||    
T  43650243 gtcctttaagttattttggtaacacataagtcctttaagatttgtaaatcttttcaacttagtccttctgttaacaaaacattacaaaaacgatgat 43650147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 47069699 - 47069743
Alignment:
Q  496 tttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||    
T  47069699 tttggttaacataatgactaaattgaaaacgtttacaaacttaaa 47069743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 49364431 - 49364399
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttctt 203  Q
    |||||||||||||||||||||||||||||||||    
T  49364431 tttaagtttgtaaacgttttcaatttagttctt 49364399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 18019933 - 18019980
Alignment:
Q  159 acatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    |||||||| || |||||||||||||||| |||||||||||| ||||||    
T  18019933 acatataagtcctttaagtttgtaaacgctttcaatttagtccttctg 18019980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 26724228 - 26724181
Alignment:
Q  168 tcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||||| ||||||||||||||||||| ||| |||||| ||||    
T  26724228 tcttttaagtttataaacgttttcaatttagtccttttgttaaccaaa 26724181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 36900033 - 36900088
Alignment:
Q  485 tttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||||||||  |||| ||||||  |||||||||||||||| |||||||||||||||    
T  36900033 tttttgtaatgtttggttaacagaatgactaaattgaaaatgtttacaaacttaaa 36900088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 252109 - 252203
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttct 205  Q
    |||||||||||||||  ||| | ||  ||| ||||| ||| |||| ||||| |||| || ||||||||||||||||||||| |||| || |||||    
T  252109 tttaagtttaaggtttgtaacagatcagtcttttaagttattttggtcacaaataagtcctttaagtttgtaaacgttttcgatttggtccttct 252203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 13903047 - 13902990
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||| ||| |||| | |||||||| || ||||| |||||||||||||||||||||||    
T  13903047 tttaagttattttggttacatataagtcctttaaatttgtaaacgttttcaatttagt 13902990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 25848443 - 25848512
Alignment:
Q  471 ctgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||| ||| |||||||||||||  |||| ||||||  | ||||||||||||||  ||||||||||||||    
T  25848443 ctgccacataatcatttttgtaatgtttggttaacagaaggactaaattgaaaacatttacaaacttaaa 25848512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 26724104 - 26724161
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||| ||| |||| |||||||||| || ||||||||| |||| ||||||||||||||    
T  26724104 tttaagttattttggtcacatataagtcctttaagtttataaaagttttcaatttagt 26724161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 537
Target Start/End: Complemental strand, 28814020 - 28813963
Alignment:
Q  480 catcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaactt 537  Q
    |||| |||||||||| |||| ||||||| |  ||||||||||||| ||||||||||||    
T  28814020 catcgtttttgtaacgtttggttaacataaatactaaattgaaaacgtttacaaactt 28813963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 36374893 - 36374954
Alignment:
Q  138 gtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||||| | |||| ||||| ||||||| ||||| |||||||| |||||| |||||||    
T  36374893 gtcctttaaataattttggtcacaaataaatcctttaaatttgtaaaagttttcgatttagt 36374954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 47069632 - 47069685
Alignment:
Q  152 tttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttct 205  Q
    |||| ||||| |||| || ||| |||| ||||||||||||||||||||||||||    
T  47069632 tttggtcacacataagtcctttgagttcgtaaacgttttcaatttagttcttct 47069685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 47573749 - 47573862
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| ||||||||||||| |||||  ||| |||| | |||||||||||| ||||  | |  |||| || ||||||||||||||   |||||||||||| |    
T  47573749 cataagtcttttaagtttgaggtttgtaacatattgatcctttaaattattttggccgctcataagtcatttaagtttgtaaaaaatttcaatttagtcc 47573848  T
Q  202 ttctgttaatcaaa 215  Q
    |||| |||| ||||    
T  47573849 ttctattaaccaaa 47573862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 26976587 - 26976491
Alignment:
Q  94 aattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgtttt 190  Q
    ||||||||||   ||| ||||||||| || ||  ||| ||||| ||||||||| ||| |||| ||||| |||| || |||||||||||||| |||||    
T  26976587 aattacatcaggggtcctttaagtttgagctttgtaacatataagtcctttaagttattttggtcacacataagtcatttaagtttgtaaatgtttt 26976491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 36375047 - 36374992
Alignment:
Q  140 cctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaattt 196  Q
    ||||||||||| |||| ||||| |||| | |||||||||||||||||||||| ||||    
T  36375047 cctttaaattattttggtcacaaataagt-ttttaagtttgtaaacgttttcgattt 36374992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 47891200 - 47891260
Alignment:
Q  139 tcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||||||| ||| |||| || ||||| | ||||||||||||||||| |||||| |||||||    
T  47891200 tcctttaagttattttggtcgcatattagtcttttaagtttgtaaatgttttcgatttagt 47891260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 22813525 - 22813440
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtg 256  Q
    |||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||| |||||| |  |||||||||||||||||||    
T  22813525 tttaagtttgtaaacgttttcaatttagtttttaggttaaccaaacattacaaaaacgatgatgtggtagttaagtgtatgatgtg 22813440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 9400075 - 9399981
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatc-ttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgat 230  Q
    |||||||||| ||| |||| ||||| |||| || |||||||||||||||| |||||||||||||  ||| ||||| |||||||||||||||||||    
T  9400075 ggtcctttaagttattttggtcacacataagtccttttaagtttgtaaaccttttcaatttagtcattccgttaaccaaacattacaaaaatgat 9399981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 14550121 - 14550183
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||    
T  14550121 tttaagtttgtaaacgttttcaatttattccttctgttaaccaaacattgcaaaaatgatgat 14550183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 36053061 - 36052999
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||||||||||| ||||||||| ||||  ||||||||| ||||||||||||||||||||||    
T  36053061 tttaagtttgtaaaagttttcaatctagtcattctgttaaccaaacattacaaaaatgatgat 36052999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 28618885 - 28618825
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaattta 197  Q
    |||||||||| ||| |||| ||||| |||||| ||||||||||||||||||||||||||||    
T  28618885 ggtcctttaagttattttggtcacaaataaattttttaagtttgtaaacgttttcaattta 28618825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 9089950 - 9090093
Alignment:
Q  90 gctaaattacatcatatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttt 189  Q
    |||||||||||| |   ||| ||||||||| |||||  | |||  |||||||||||||||| |||   |||| ||||||  ||||||||| ||||||  |    
T  9089950 gctaaattacataaggggtcatttaagtttgaggtttgtgataggtaggtcctttaaattatttttgccacacataaattctttaagtttataaacggat 9090049  T
Q  190 tcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    |||||||| | ||||| |||||| ||||||||||||||| ||||    
T  9090050 tcaatttaatacttctattaatccaacattacaaaaatgctgat 9090093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 41151494 - 41151572
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||| ||| |||| ||||| |||| || |||| ||||||||| |||||||||||||| |||||||||| ||||    
T  41151494 ggtcctttaagttattttggtcacacataagtcctttatgtttgtaaatgttttcaatttagtccttctgttaaccaaa 41151572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 14895170 - 14895130
Alignment:
Q  159 acatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  14895170 acatataaatcctttaagtttgtaaacgttttcaatttagt 14895130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 14895072 - 14895018
Alignment:
Q  145 aaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||||| ||||  |||| ||||||||||||| |||||||||||||||||||||||    
T  14895072 aaattattttggccacacataaatcttttaaatttgtaaacgttttcaatttagt 14895018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 27855777 - 27855727
Alignment:
Q  175 agtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaa 225  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||| ||||    
T  27855777 agtttgtaaacgttttcaatttaattcttctattaatcagacattaaaaaa 27855727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 541
Target Start/End: Original strand, 9399972 - 9400041
Alignment:
Q  472 tgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    |||| ||| |||||||||||||  |||| |||||   |||||||||||||||| ||||||||||||||||    
T  9399972 tgccacatgatcatttttgtaatgtttggttaacggaatgactaaattgaaaaggtttacaaacttaaaa 9400041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 24793024 - 24793169
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    |||||||||  |||| |||||| |||| |||||||||||| |||| | ||| |||| |  ||||| ||||||||  ||||||||||| |  || ||||||    
T  24793024 tttaagtttgcggtttataatagatagatcctttaaattattttggttacacataagtactttaaatttgtaaaaattttcaatttaatcattatgttaa 24793123  T
Q  211 tcaaacattacaaaaatgatgatctaatagttaagtgtatgatgtg 256  Q
     ||||||||| |||||  || || | |  |||||||||||||||||    
T  24793124 ccaaacattaaaaaaacaattatgtgactgttaagtgtatgatgtg 24793169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 27127967 - 27128032
Alignment:
Q  141 ctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    |||||| ||| |||| ||||| |||| || |||||||||||||| |||||||||||||| ||||||    
T  27127967 ctttaagttattttggtcacacataagtcctttaagtttgtaaatgttttcaatttagtccttctg 27128032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 540
Target Start/End: Original strand, 22813449 - 22813525
Alignment:
Q  464 cacttaactgccgcatcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    ||||||||| || ||||||| |||||||||  |||| ||||| | |  ||||||||||||| |||||||||||||||    
T  22813449 cacttaactaccacatcatcgtttttgtaatgtttggttaacctaaaaactaaattgaaaacgtttacaaacttaaa 22813525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 27052677 - 27052584
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagt 199  Q
    |||| ||| ||||||||| ||||| |||| | || |||||||||| ||| |||||||||| ||||    ||||||||||||||| ||||| |||||||    
T  27052677 cataagtcctttaagtttgaggtttataacagattggtcctttaagttattttgatcacacataa----tttaagtttgtaaactttttcgatttagt 27052584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 27855560 - 27855627
Alignment:
Q  111 tttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtt 178  Q
    |||||||||||||||  ||||| || |||||||||| ||| ||||| |||| ||||||| ||||||||    
T  27855560 tttaagtttaaggtttgtaatagattggtcctttaagttattttgaacacacataaatcatttaagtt 27855627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 540
Target Start/End: Original strand, 36052998 - 36053061
Alignment:
Q  477 catcatcatttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaa 540  Q
    |||||||||||||||||  |||| ||||||  ||||||| ||||||||  ||||||||||||||    
T  36052998 catcatcatttttgtaatgtttggttaacagaatgactagattgaaaacttttacaaacttaaa 36053061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 24909652 - 24909574
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    |||||||||||||| |||| ||||  |||| || ||||||||||||||    ||||||||||| |||||||||| ||||    
T  24909652 ggtcctttaaattattttggtcacgcataagtcctttaagtttgtaaaaaaattcaatttagtccttctgttaaccaaa 24909574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 38414956 - 38415026
Alignment:
Q  141 ctttaaattaatttgatcacatataaa-tcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    |||||| ||| |||| ||||||||||| || ||||| |||||||| ||||||||||||||| |||| ||||    
T  38414956 ctttaagttattttggtcacatataaaatcctttaaatttgtaaatgttttcaatttagttattctattaa 38415026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 24827466 - 24827515
Alignment:
Q  157 tcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    ||||| |||| |||||||| ||||||||||||||| ||||||| ||||||    
T  24827466 tcacacataagtcttttaaatttgtaaacgttttcgatttagtccttctg 24827515  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 24083250 - 24083206
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaa 215  Q
    ||||||||||||||| ||||||||||||  |||||||||| ||||    
T  24083250 tttaagtttgtaaacattttcaatttagcccttctgttaaccaaa 24083206  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 27128118 - 27128050
Alignment:
Q  142 tttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgttaa 210  Q
    ||||| ||| |||| ||||| |||| | |||| ||| |||||||||||||||||||||  |||||||||    
T  27128118 tttaagttattttggtcacacataagttttttcagtctgtaaacgttttcaatttagtcattctgttaa 27128050  T

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Target: scaffold0157 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 21803 - 21699
Alignment:
Q  102 catatgtcttttaagtttaaggttcataatatataggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttc 201  Q
    |||| |||||||||||||||||||   ||||||| | || ||||| ||| |||| ||||| ||||||| ||||||||||||||   |||||||||||| |    
T  21803 cataagtcttttaagtttaaggtttgcaatatattgatcttttaagttattttggtcacacataaatcctttaagtttgtaaaaaatttcaatttagtcc 21704  T
Q  202 ttctg 206  Q
    |||||    
T  21703 ttctg 21699  T

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Target: scaffold0157; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 21611 - 21677
Alignment:
Q  139 tcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttct 205  Q
    |||||||||||| || | ||||| |||| |||||||| ||||||||||||||| ||||||| |||||    
T  21611 tcctttaaattatttcggtcacacataagtcttttaaatttgtaaacgttttcgatttagtccttct 21677  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 12290 - 12212
Alignment:
Q  141 ctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttc-tgttaatcaaacatta 220  Q
    |||||| ||| ||||||||||||  |||||||||| |||||||| |||||||||||||| |||| |||||| |||||||||    
T  12290 ctttaacttattttgatcacata--aatcttttaaatttgtaaatgttttcaatttagtccttcttgttaaccaaacatta 12212  T

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Target: scaffold0128 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 2504 - 2566
Alignment:
Q  171 tttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaatgatgat 233  Q
    ||||||||||||||||||| | || |||| ||||| |||| ||||||||||||||| ||||||    
T  2504 tttaagtttgtaaacgtttcctatctagtccttctattaaccaaacattacaaaaacgatgat 2566  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 161653 - 161581
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctgtta 209  Q
    |||||||||  ||| |||| ||||| |||| || |||||||||||||| ||||||||||||||  ||||||||    
T  161653 ggtcctttaggttattttggtcacacataagtcctttaagtttgtaaaagttttcaatttagtcattctgtta 161581  T

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Target: scaffold1191 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold1191
Description:

Target: scaffold1191; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 1349 - 1406
Alignment:
Q  169 cttttaagtttgtaaacgttttcaatttagttcttctgttaatcaaacattacaaaaa 226  Q
    ||||||||||| |||||||||||||||||||  || | |||| ||||| |||||||||    
T  1349 cttttaagtttataaacgttttcaatttagtcattgtcttaaccaaacgttacaaaaa 1406  T

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Target: scaffold1191; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 541
Target Start/End: Complemental strand, 1406 - 1350
Alignment:
Q  485 tttttgtaacatttgattaacatgatgactaaattgaaaaagtttacaaacttaaaa 541  Q
    |||||||||| |||| |||| |  |||||||||||||||| ||||| ||||||||||    
T  1406 tttttgtaacgtttggttaagacaatgactaaattgaaaacgtttataaacttaaaa 1350  T

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Target: scaffold0279 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 1183 - 1114
Alignment:
Q  137 ggtcctttaaattaatttgatcacatataaatcttttaagtttgtaaacgttttcaatttagttcttctg 206  Q
    |||||||||  ||| |||| ||||| |||| || |||||||||||||| ||||||||||| || ||||||    
T  1183 ggtcctttaggttattttggtcacacataagtcctttaagtttgtaaaagttttcaattttgtccttctg 1114  T

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