View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3019-Insertion-3 (Length: 584)
Name: NF3019-Insertion-3
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 8 - 583
Target Start/End: Original strand, 22633189 - 22633764
Alignment:
| Q |
8 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctttagat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22633189 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctttagat |
22633288 |
T |
|
| Q |
108 |
tgatttggatattgtcactaatttcaacatcacagaagataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgactt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22633289 |
tgatttggatattgtcactaatttcaacatcacacaaaataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgactt |
22633388 |
T |
|
| Q |
208 |
ggaaagcaaagaacacttaagcagatcaagtacctataaaaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22633389 |
ggaaagcaaagaacacttaagcagatcaagtacctataaaaaatagtaattgtaatcgatcaaaaattgaagagagaagttataacttataaacaaacgc |
22633488 |
T |
|
| Q |
308 |
aatattcaaattcaaaaccttttctttggtgacattcagaactacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagctt |
407 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |
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|
| T |
22633489 |
aatattcaaatacaaaaccttttctttggtgaaattcagaaccacttcttttaccgaactagggttttttatgccaaattcctcgaacagactaaagctt |
22633588 |
T |
|
| Q |
408 |
gtatagtcaatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaaggataattg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
22633589 |
gtatagtcaatacagtttggcttgatagtgagatcatcagttatgacaaaagtagctacatcattaacaaatccttgggggagacgtgtaaggataattg |
22633688 |
T |
|
| Q |
508 |
gatgggtaaacgaattcccacagtgacatttatgtttatctttataccttgagttggtaatattacgatataagca |
583 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22633689 |
gatgggtaaaagaattcccacagtgacatttatgtttatctttatacgttgagttggtaatattacgatataagca |
22633764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 551
Target Start/End: Complemental strand, 22625981 - 22625438
Alignment:
| Q |
8 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctttagat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22625981 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacattaccttgttatctgattttcttataactagctttagat |
22625882 |
T |
|
| Q |
108 |
tgatttggatattgtcactaatttcaacatcacagaagataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgactt |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22625881 |
tgatttggatattgtctctaatttcaacatcactcaatataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgactt |
22625782 |
T |
|
| Q |
208 |
ggaaagcaaagaacacttaagcagatcaagtacctataaaaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22625781 |
ggaaagcaaagaacacttaagcagatcaagtacctataacaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgc |
22625682 |
T |
|
| Q |
308 |
aatattcaaattcaaaaccttttctttggtgacattcagaactacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagctt |
407 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22625681 |
aatattcaaatacaaaaccttttctttggtgacattcagaaccacttcttttaccgaactagggttttttacgccaaattccttgaacaggctaaagctt |
22625582 |
T |
|
| Q |
408 |
gtatagtcaatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaaggataattg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |
|
|
| T |
22625581 |
gtatagtcaatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatccttgggggagatgtttaagtaaaactg |
22625482 |
T |
|
| Q |
508 |
gatgggtaaacgaattcccacagtgacatttatgtttatcttta |
551 |
Q |
| |
|
|| ||||||| |||||||||| |||| ||| | ||||||||| |
|
|
| T |
22625481 |
gacgggtaaaataattcccacaacgacacttaagattatcttta |
22625438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 312 - 553
Target Start/End: Complemental strand, 22623363 - 22623121
Alignment:
| Q |
312 |
ttcaaattcaaaaccttttctttggtgacattcagaactacttcttttactgaactagggtttttt-atgccaaattccttgaacaggctaaagcttgta |
410 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||| || ||||||| |||||||||||| |
|
|
| T |
22623363 |
ttcaaatacaaaatcttttctttagtgacattcagaaccacttcttttaccgaactagggtttttttatgccaaactcgttgaacaaactaaagcttgta |
22623264 |
T |
|
| Q |
411 |
tagtcaatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaaggataattggat |
510 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| || ||| | ||||||||| |||| || |
|
|
| T |
22623263 |
taggcaatacaatttggcttgatagtgagatcatcagttatgacaaaagtagttacaccagtaacaaatccttggcggatatgtttaaggaaaatttgaa |
22623164 |
T |
|
| Q |
511 |
gggtaaacgaattcccacagtgacatttatgtttatctttata |
553 |
Q |
| |
|
||||| |||| ||||| ||||||||| |||||||||||| |
|
|
| T |
22623163 |
ctgtaaaagaatgaccacatcgacatttatatttatctttata |
22623121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 23366558 - 23366321
Alignment:
| Q |
8 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctttagat |
107 |
Q |
| |
|
||||||| |||||||| |||||||| |||| |||||||||||| | ||||||||| |||| | |||| ||| ||||||||||||||||| || |||| |
|
|
| T |
23366558 |
aaaggaatagtaagaaagcttaaaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataactagtttcagat |
23366459 |
T |
|
| Q |
108 |
tgatttggatattgtcactaatttcaacatcacagaagataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgactt |
207 |
Q |
| |
|
||||||||||||| ||| |||||||||||| | ||| |||||| || |||||||||||||||||| ||| || ||||| |||||||| ||||| |
|
|
| T |
23366458 |
tgatttggatattaccaccaatttcaacatcgtacgagaaaaacctggaaacctcaagggatggtttctttcctaaaaagaaatcggtcaaagtagactt |
23366359 |
T |
|
| Q |
208 |
ggaaagcaaagaacacttaagcagatcaagtacctata |
245 |
Q |
| |
|
|| | ||||||||| || | || |||||||||||||| |
|
|
| T |
23366358 |
cgacaacaaagaacattttaacaaatcaagtacctata |
23366321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 23326730 - 23326835
Alignment:
| Q |
8 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctttagat |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||| || ||| ||||||||||||||||| || | || |
|
|
| T |
23326730 |
aaaggaaatgtaagaaaacataaaagtaagtttgcaaaatattcgtccccttgagcatacaatacttttccatccgattttcttataactagtttcacat |
23326829 |
T |
|
| Q |
108 |
tgattt |
113 |
Q |
| |
|
|||||| |
|
|
| T |
23326830 |
tgattt |
23326835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 23354709 - 23354940
Alignment:
| Q |
11 |
ggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctttagattga |
110 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||||||||| | ||||||||||||||||| |||| |||||||||||| ||||||||| | ||| |
|
|
| T |
23354709 |
ggaaatgtgagataacttacaagtaagtctgcaaaatctttttctccttgagcatacaatatcttgccatctgattttctataaactagcttcaatctga |
23354808 |
T |
|
| Q |
111 |
tttggatattgtcactaatttcaacatcacagaagataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttgga |
210 |
Q |
| |
|
||| |||||| ||| || | |||| |||| ||| || |||| |||| | |||||||||| ||||| || |||||||||| |||||||||||| |
|
|
| T |
23354809 |
ttttgatattactactgtttgcgacattacaggagaaaacacttggactctggatcaatggtttcttttctagaaagaaatctgtcagagttgacttgga |
23354908 |
T |
|
| Q |
211 |
aagcaaagaacacttaagcagatcaagtacct |
242 |
Q |
| |
|
|||||||| |||||| | ||||| ||||||| |
|
|
| T |
23354909 |
aagcaaagcacactttaaaagatcgagtacct |
23354940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 23335434 - 23335515
Alignment:
| Q |
21 |
gaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctt |
102 |
Q |
| |
|
||||||||||||||| ||||||||||| || | ||| |||||||||||| |||| | ||||||||||||||||| ||||| |
|
|
| T |
23335434 |
gaaaacttaaaagtatatttgcaaaatcatgttcccctagagcatacaataacttgctgtctgattttcttataacaagctt |
23335515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 23339685 - 23339779
Alignment:
| Q |
8 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctt |
102 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| | |||||||| ||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
23339685 |
aaaggaaatgtgagaaaacttaaaagaaagtttgcaaaatcataactcccttgagcgtacaaaatctttacgtctgattttcttataactagctt |
23339779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 23347255 - 23347336
Alignment:
| Q |
8 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttc |
89 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| | |||||||||| |||||| |||| || |||||||| |
|
|
| T |
23347255 |
aaaggaaatgtgagaaaacttaaaagtaagtcaacaaaatctttttctccttgagcaaacaatatcttgccatttgattttc |
23347336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 482
Target Start/End: Complemental strand, 23366186 - 23366019
Alignment:
| Q |
315 |
aaattcaaaaccttttctttggtgacattcagaactacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagt |
414 |
Q |
| |
|
|||| ||||||||||||| | ||||| || |||| | ||| || || ||||| | ||||| ||| |||||||||| || || | ||| |||| |||| |
|
|
| T |
23366186 |
aaatgcaaaaccttttctatagtgactttaagaatcatttccttcaccgaacttgtgttttctattccaaattcctggagaagcccaaaacttgcgtagt |
23366087 |
T |
|
| Q |
415 |
caatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatcct |
482 |
Q |
| |
|
||||| | |||||| ||||| | |||||||| ||||| ||||| ||||| ||| | |||||||||||| |
|
|
| T |
23366086 |
caatagaatttggcatgataatcagatcatcggttattacaaaagtagcaacatcgttaacaaatcct |
23366019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 23262578 - 23262672
Alignment:
| Q |
8 |
aaaggaaatgtaagaaaacttaaaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctt |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| || | | |||||||| ||||||| || |||||||||||| ||||| ||||| |
|
|
| T |
23262578 |
aaaggaaatgtaagaaaacttaaaagcaagtctgcaaattcacgatccccttgagcgtacaatattttcccatctgattttctaataaccagctt |
23262672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 3733970 - 3734014
Alignment:
| Q |
436 |
tgagatcatcagttatgacaaatgtagctacaccattaacaaatc |
480 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
3733970 |
tgagatcgtccgttatgacaaaagtagctacaccattaagaaatc |
3734014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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