View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019-Insertion-4 (Length: 442)
Name: NF3019-Insertion-4
Description: NF3019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 39272963 - 39273243
Alignment:
| Q |
7 |
agtgttcacatataccttgcacatgccttgaaatacaaagagtagatagattctatgaattggtgaaaaatgtattattagtttgagttgtgtgtgaaga |
106 |
Q |
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| T |
39272963 |
agtgttcacatataccttgcacatgccttgaaatacaaagagtagatagattctatgaattggtgaaaaatgtattattagtttgagttgtgtgtaaaga |
39273062 |
T |
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| Q |
107 |
aaaagaaaaacctgtattggttgaggtcggaattgatggcggaaacggcggcgtttttgatgtggagaggagcagggaagtcagggaagccttcagctag |
206 |
Q |
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| T |
39273063 |
aaaagaaaaacctgtattggttgaggtcggaattaatggcggaaacggcggcgtttttgatgtggagaggagcagggaagtcagggaagccttcagctag |
39273162 |
T |
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| Q |
207 |
gttgatagcattgcatctctgagcaaggtgagagagttcttgaatgggtgatgatgtaagcttctttgccgcacgcgacaa |
287 |
Q |
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| T |
39273163 |
gttgatagcattgcatctctgagcaaggtgagagagttcttgaatgggtgatgatgtaagcttctttgccgcacgcgacaa |
39273243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 324 - 429
Target Start/End: Original strand, 39273272 - 39273382
Alignment:
| Q |
324 |
atcactatccctgttacacaactact-----atactgtgtgttgaattggttttaagcttgctggttttttagttaaattttaaaattcaatatgttgtc |
418 |
Q |
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| T |
39273272 |
atcactatccctgttacacaactactatactatactgtgtgttgaatttgttttaaggttgctggttttttagttaaattttaaaattaaatatgttgtc |
39273371 |
T |
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| Q |
419 |
ataaaattatg |
429 |
Q |
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| T |
39273372 |
ataaaattatg |
39273382 |
T |
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