View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019R-Insertion-2 (Length: 660)
Name: NF3019R-Insertion-2
Description: NF3019R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019R-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 7 - 658
Target Start/End: Original strand, 32741490 - 32742142
Alignment:
| Q |
7 |
caaaaacgggacacttcccataaactccaaacatggaaaaccaaagctgctgctctaacaacttagcaaagcctgccatactacgagccctaacacagca |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32741490 |
caaaaacgggacacttcccataaactccaaacatggaaaaccaaagctgctgctctaacaacttagcaaagcctggcatactacgagccctaacacagca |
32741589 |
T |
|
| Q |
107 |
gcgctatcctacaccaaaaaagggactgcagaagtagttttagcagcaaacagcaccatgatccaaataaaaaccagcnnnnnnnggcagcagaatgccc |
206 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
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| T |
32741590 |
gcgctatcctacaccaaaaaagagactacagaagtagttttagcagcaaacagctccatgatccaaataaaaaccagcaaaaaaaggcagcagaacgccc |
32741689 |
T |
|
| Q |
207 |
aaagaaatagaaacagatgacaacaaaaaacagcacagcagccgcgccccaactgctacctccggaagcattccctcgggttcccaacacaattcagagt |
306 |
Q |
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||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32741690 |
aaaaaaacagaaacagatgacaacaaaaaacagcacagtagccgcgccccaactgctacctccggaagcattccctcgggttccaaacacaattcagagt |
32741789 |
T |
|
| Q |
307 |
actaacgcggcgtgatttttagacgcgttaaactctaccgccaagacagcacctttatatcttccactaaatccgaccactcaatatccgtattgttaaa |
406 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
32741790 |
actaacacggcgtgatttttagacgcgttaaactccaccgccaagacagcacctttatatcctccactaaatccgaccacctaatatccatattgttaaa |
32741889 |
T |
|
| Q |
407 |
aatacgattatttctagctttccaaataacccacaaagttgtatgccaaatgagcctcaacccctctttaaccttcttactagtttgccataccatccca |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
32741890 |
aatacgattatttctagctttccaaataacccacaaagttgtatgccaaatgagcctcaacccctctttaaccttcttactag-ttgccatatcatccca |
32741988 |
T |
|
| Q |
507 |
acacgcccaacgagtgtacacattcagaggcataatgaaactccccctccacccaacaaagaagctcaacacaaatcttccataccactcgacagtgc-- |
604 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
32741989 |
acacgcccaatgagtgtacacattcagaggcataatg-aactccccctccacccaacaaagaagctcaacacaaatcttccacaccacttgacagtgcaa |
32742087 |
T |
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| Q |
605 |
--aaaaaacaaatggctttccgattcccccaccaaaatcacaaagaacgcaattca |
658 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
32742088 |
aaaaaaaaaaaatggctttccgattcccccacc-aaatcacaaaggacgcaattca |
32742142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 32122913 - 32123015
Alignment:
| Q |
389 |
aatatccgtattgttaaaaatacgattatttctagctttccaaataacccacaaagttgtatgccaaatgagcctcaacccctctttaaccttcttacta |
488 |
Q |
| |
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|||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||| || ||| ||||||||||| || |
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| T |
32122913 |
aataaccgtactattaaaaatacaattatttctagctttccaaataacccacaaagttgtatgccaaattaaccgcaaaccttctctaaccttcttatta |
32123012 |
T |
|
| Q |
489 |
gtt |
491 |
Q |
| |
|
||| |
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|
| T |
32123013 |
gtt |
32123015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 28719711 - 28719744
Alignment:
| Q |
402 |
ttaaaaatacgattatttctagctttccaaataa |
435 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |
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|
| T |
28719711 |
ttaaaaatacgatcatttctagctttccaaataa |
28719744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 47337023 - 47337081
Alignment:
| Q |
398 |
attgttaaaaatacgattatttctagctttccaaataacccacaaagttgtatgccaaa |
456 |
Q |
| |
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||||||||||||||| ||||| ||||| |||||||||||||||| || |||||||||| |
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| T |
47337023 |
attgttaaaaatacggttattcctagccctccaaataacccacaaggtggtatgccaaa |
47337081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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