View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019R-Insertion-3 (Length: 521)
Name: NF3019R-Insertion-3
Description: NF3019R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019R-Insertion-3 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 17832712 - 17832983
Alignment:
| Q |
9 |
gcagcaaagttttctgatggtacaatacttcagcagagcataaaggcatgcattttgttcctagattttgatcaatctctgcgtaatctttcatagtttc |
108 |
Q |
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| T |
17832712 |
gcagcaaagttttctgatggtacaatactgcagcagagcataaaggcatgcattttgttcctagattttgatcaatctctgcgtaatctttcatagtttc |
17832811 |
T |
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| Q |
109 |
tattaaaactattttcatactttttgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtatt |
208 |
Q |
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| T |
17832812 |
tattaaaactattttcatactttttgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctcaatgcaagtgtgattacaatgaagtatt |
17832911 |
T |
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| Q |
209 |
gaagttctttacatttaagactccctgtttgatttagtatttatacaaattggatgtatgttgcctttaaga |
280 |
Q |
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| T |
17832912 |
ggagttctttacatttaagactcactatttgatttagtatttatacaaattggatgtatgttgcctttaaga |
17832983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 304 - 521
Target Start/End: Original strand, 17833004 - 17833221
Alignment:
| Q |
304 |
aaataggaaggataaaccattaaagtccaataggctgtgtgatatctatatataatgtattttccttcatgtatttagctaccatgtaagtgttgttgac |
403 |
Q |
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| T |
17833004 |
aaataggaaggataaaccattaaagtccaataggctgtgtgatatctatatataatgtattttccttcatgtatttagctatcatgtaagtgttgctgac |
17833103 |
T |
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| Q |
404 |
atattcttccaatgaatgaaagtacttaaagtaaattcaagtttcaattttgactatattgtgttctggatttttattttcaaaacaaatagtaggattg |
503 |
Q |
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| T |
17833104 |
acattcttccaatgaatgaaagtacttaaagtaaattcaagtttcaattttgactatattgtgttttggatttttattttcaaaacaaatagtaggattg |
17833203 |
T |
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| Q |
504 |
tagttgtggcttatgttg |
521 |
Q |
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| T |
17833204 |
tagttgtggcttatgttg |
17833221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 7391030 - 7391119
Alignment:
| Q |
154 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
243 |
Q |
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| T |
7391030 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactccctgtttcattt |
7391119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 19586082 - 19585993
Alignment:
| Q |
154 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
243 |
Q |
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| T |
19586082 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactccctgtttcattt |
19585993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 440 - 529
Alignment:
| Q |
154 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
243 |
Q |
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| T |
440 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacaattaactattgaagatttttaaatttaagactccctgtttcattt |
529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 11657815 - 11657726
Alignment:
| Q |
154 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
243 |
Q |
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| T |
11657815 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactacctgtttcattt |
11657726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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