View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019R-Insertion-4 (Length: 368)
Name: NF3019R-Insertion-4
Description: NF3019R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019R-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 5159770 - 5159410
Alignment:
| Q |
9 |
gatggaacaggagcatagatgttgccacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatt |
108 |
Q |
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| T |
5159770 |
gatggaacaggagcatagatgttgccacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatt |
5159671 |
T |
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| Q |
109 |
tgtagnnnnnnncccctctgtttgtgacctttgtgtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggata |
208 |
Q |
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| T |
5159670 |
tgtagtttttttcccctctgtttgtgacctttgtgtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggata |
5159571 |
T |
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| Q |
209 |
atgtgattagtttggttggtaggtattggctatgtgctttcttcttgttgggtccacaaatagccatgctttgcga-ataaagtttagataagggaaaac |
307 |
Q |
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| T |
5159570 |
atgtgattagtttggttggtagttattggctatgtgctttcttcttgttgggtccacaaatagccatgctttgcaagataaagtttagataagggaaaac |
5159471 |
T |
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| Q |
308 |
ataccatggagaattatcagttaaatttgacagattaaacacaggagtacttcttatgtgt |
368 |
Q |
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| T |
5159470 |
ataccatggagaattatcagttaaatttgacagattaaacacaggagtacttcttatgtgt |
5159410 |
T |
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