View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019R-Insertion-8 (Length: 181)
Name: NF3019R-Insertion-8
Description: NF3019R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019R-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 38510546 - 38510608
Alignment:
| Q |
119 |
atcaaagcaaaactaatactgaaaaagggtgttggtatctgatattacgttagaagccttttt |
181 |
Q |
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| T |
38510546 |
atcaaagcaaaactaatactgaaaaagggtgttggtatctgatattacgttagaagccttttt |
38510608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 38510435 - 38510499
Alignment:
| Q |
44 |
ctgaaatgaagttttagttccaaatatagagcaaaactaatctctattcacatatctatgaatcc |
108 |
Q |
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| T |
38510435 |
ctgaaatgaagttttagttccaaatatgtagcaaaattaatccctattcacatatctatgaatcc |
38510499 |
T |
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Target: chr2 (Bit Score: 55; Significance: 7e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 22144974 - 22145036
Alignment:
| Q |
119 |
atcaaagcaaaactaatactgaaaaagggtgttggtatctgatattacgttagaagccttttt |
181 |
Q |
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| T |
22144974 |
atcaaaacaaaactaatactgaaaacgggtgttggtatctgatattacgttagaagccttttt |
22145036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 27561219 - 27561155
Alignment:
| Q |
44 |
ctgaaatgaagttttagttccaaatatagagcaaaactaatctctattcacatatctatgaatcc |
108 |
Q |
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| T |
27561219 |
ctgaaatgaagttttagttccaaatatatagcaaaattaatccctattcacatatctatgaatcc |
27561155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 37457660 - 37457596
Alignment:
| Q |
44 |
ctgaaatgaagttttagttccaaatatagagcaaaactaatctctattcacatatctatgaatcc |
108 |
Q |
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| T |
37457660 |
ctgaaatgaagttttagttccaaatatatagcaaaattaatccctattcacatatctatgaatcc |
37457596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 22144864 - 22144927
Alignment:
| Q |
44 |
ctgaaatgaagttttagttccaaatatagagcaaaactaatctctattcacatatctatgaatcc |
108 |
Q |
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| T |
22144864 |
ctgaaaagaagttttagttccaaatatatagcaaaattaatc-ctattcacatatctatgaatcc |
22144927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 5742681 - 5742745
Alignment:
| Q |
44 |
ctgaaatgaagttttagttccaaatatagagcaaaactaatctctattcacatatctatgaatcc |
108 |
Q |
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| T |
5742681 |
ctgaaatgaagttttagttccaaatatatagcaaaattaatccctattcacatatctatgaatcc |
5742745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 1662150 - 1662190
Alignment:
| Q |
45 |
tgaaatgaagttttagttccaaatatagagcaaaactaatc |
85 |
Q |
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| T |
1662150 |
tgaaatgaagtgttagttccaaatatatagcaaaattaatc |
1662190 |
T |
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