View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3019_1D_high_1 (Length: 929)
Name: NF3019_1D_high_1
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 812; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 1 - 888
Target Start/End: Original strand, 8296296 - 8297178
Alignment:
| Q |
1 |
cactttacactctagagtgagttgctcaactcactttagaggagccagatgcaatgtatactagacatacatgctagaagacttcagttctaaaatggtt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8296296 |
cactttacactctaaagtgagttgctca-----ctttagaggagccagatccaatgtatactagacatacatgctagaagacttcagttctaaaatggtt |
8296390 |
T |
|
| Q |
101 |
gcttccaattgaaattatgaaacatgaggatcaacaattcatatatttttctcatttggtaagttagagaagaatttgattgttataatgaaccaaatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8296391 |
gcttccaattgaaattatgaaacatgaggatcaacaattcatatatttttctcatttggtaagttagagaagaatttgattgttataatgaactaaatga |
8296490 |
T |
|
| Q |
201 |
aactaaaaccaaagtttcaagcaaatttaaagacaaagttcactcttttggtttttaaaaatgcaaaaaccaaacttcatcaggcaattggaaatagctt |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8296491 |
aaccaaaaccaaagtttcaagcaaatttaaagacaaagttcactcttttggtttttaaatatgcaaaaaccaaacttcatcaggaaattggaaatagctt |
8296590 |
T |
|
| Q |
301 |
aaactgtccattgattccacataaatatttggagaagacattaacattaagagaaatctccagattcaaacaaataccctaaagcaggacatgaaattag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8296591 |
aaactgtccattgattccacataaatatttggggaagacattaacattaagagaaatctccagattcaaacaaataccctaaagcaggacatgaaattag |
8296690 |
T |
|
| Q |
401 |
caaagcagaggataacatcaagaaaaaatttcagaatataacagacatagttttacatacttcaaactttgaaaatgagtgacaggaaactagacatagt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
8296691 |
caaagcagaggataacatcaagaaaaattttcagaatataacagacatagttttacatacttcaaacattgaagatgagtgacaggaaaccagacatagt |
8296790 |
T |
|
| Q |
501 |
tataaaaccaacctaattcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctcaataa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8296791 |
tataaaaccaacctaattcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctgaataa |
8296890 |
T |
|
| Q |
601 |
gtaccatacaggacatgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatcttaaatacagagtttttcatgcttcaaac |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8296891 |
gtaccatacaggacatgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatgttaaatacagagtttttcatgcttcaaac |
8296990 |
T |
|
| Q |
701 |
tgaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatac |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8296991 |
tgaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatac |
8297090 |
T |
|
| Q |
801 |
tttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaat |
888 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8297091 |
tttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaat |
8297178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 176 - 887
Target Start/End: Original strand, 8300054 - 8300755
Alignment:
| Q |
176 |
ttgattgttataatgaaccaaatgaaactaaaaccaaagtttcaagcaaatttaaagacaaagttcactcttttggtttttaaaaatgcaaaaaccaaac |
275 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8300054 |
ttgattgttataatgaactaaatgaaactaaaaccaaa------------tttaaagacaaagttcactcttttggtttttaaatatgcaaaaaccaaac |
8300141 |
T |
|
| Q |
276 |
ttc-atcaggcaattggaaatagcttaaactgtccattgattccacataaatatttggagaagacattaacattaagagaaatctccagattcaaacaaa |
374 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8300142 |
ttccatcaggcaattggaaatagcttaaactgtccattgattccacataaatatttggggaagacattaacattaagagaaatctccagattcaaacaaa |
8300241 |
T |
|
| Q |
375 |
taccctaaagcaggacatgaaattagcaaagcagaggataacatcaagaaaaaatttcagaatataacagacatagttttacatacttcaaactttgaaa |
474 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||| ||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8300242 |
tacccaaaagcaggaaatgaaattagcaaggcagtggatagcatcaagagaaatttttagaatataacagacatagttttacatacttcaaacattgaaa |
8300341 |
T |
|
| Q |
475 |
atgagtgacaggaaactagacatagttataaaaccaacctaattcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaac |
574 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8300342 |
atgagtgacaggaaaccagacatagttataaaaccaacctaattcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaac |
8300441 |
T |
|
| Q |
575 |
cgaaactttttcagctccctcaataagtaccatacaggacatgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatctta |
674 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||| ||| |
|
|
| T |
8300442 |
cgaaactttttcagctccctgaataattaccatacaggacatggaattaggaatgcagaggttaacac-------catgagcaaaattttcagaatatta |
8300534 |
T |
|
| Q |
675 |
aatacagagtttttcatgcttcaaac--------tgaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcatt |
766 |
Q |
| |
|
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||| || ||||| ||| |||| | |||||| |
|
|
| T |
8300535 |
aagacagagtttttcattcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgtaaagatttcgagacacttcatt |
8300634 |
T |
|
| Q |
767 |
ttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagca |
866 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
8300635 |
ttgtactccatagtttgcatttcaactctgatactttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcg |
8300734 |
T |
|
| Q |
867 |
tcaagtttttgaaatatctaa |
887 |
Q |
| |
|
| |||||||||| |||||||| |
|
|
| T |
8300735 |
taaagtttttgatatatctaa |
8300755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 78 - 301
Target Start/End: Complemental strand, 18280377 - 18280154
Alignment:
| Q |
78 |
aagacttcagttctaaaatggttgcttccaattgaaattatgaaacatgaggatcaacaattcatatatttttctcatttggtaagttagagaagaattt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
18280377 |
aagacttcagttctaaaatggttgcttccaattgaaattatgaattatgaggatcatcaattcattgatttttctcagttggtccgttagagaagaattt |
18280278 |
T |
|
| Q |
178 |
gattgttataatgaaccaaatgaaactaaaaccaaagtttcaagcaaatttaaagacaaagttcactcttttggtttttaaaaatgcaaaaaccaaactt |
277 |
Q |
| |
|
||||| |||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18280277 |
gattggtataatgaactaaatgaagccaaaaccaaagtttcaagcaaatttaaagacaatgttcactcttttggtttttaaatatgcaaaaaccaaactt |
18280178 |
T |
|
| Q |
278 |
catcaggcaattggaaatagctta |
301 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18280177 |
catcaggcaattggaaatagctta |
18280154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 577 - 884
Target Start/End: Complemental strand, 18279782 - 18279473
Alignment:
| Q |
577 |
aaactttttcagctccctcaataagtaccatacaggacatgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatcttaaa |
676 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| ||||| |
|
|
| T |
18279782 |
aaactttttcagatccctgaataagtaccatacaggacatgaaattagctatgcagaggttaaca-------tcatgagcaatactttcagaatattaaa |
18279690 |
T |
|
| Q |
677 |
tacagagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataaatccgcataa---agcttttgagaaaattcat |
765 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||| | ||||||| ||||||||||| |||||| |
|
|
| T |
18279689 |
gacag--tttttcatgcttcaaactttgaaaatgaaattaacaagccaagaaattttactcgagataagtacgcataataaagcttttgagacaattcaa |
18279592 |
T |
|
| Q |
766 |
tttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagc |
865 |
Q |
| |
|
||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
18279591 |
attatcctccatagtttgcttttcaactttgacactttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagc |
18279492 |
T |
|
| Q |
866 |
atcaagtttttgaaatatc |
884 |
Q |
| |
|
| ||| |||||| ||||| |
|
|
| T |
18279491 |
gtaaagcttttgatatatc |
18279473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 298 - 490
Target Start/End: Complemental strand, 18280081 - 18279889
Alignment:
| Q |
298 |
cttaaactgtccattgattccacataaatatttggagaagacattaacattaagagaaatctccagattcaaacaaataccctaaagcaggacatgaaat |
397 |
Q |
| |
|
|||||| ||| |||| |||||||||||| |||||| | ||| |||||||||||| |||| || |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
18280081 |
cttaaattgtgcattcattccacataaaaatttggggcagatgttaacattaagataaatttctagattcaaacaaatacccaaaagcaggaaatgaaat |
18279982 |
T |
|
| Q |
398 |
tagcaaagcagaggataacatcaagaaaaaatttcagaatataacagacatagttttacatacttcaaactttgaaaatgagtgacaggaaac |
490 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||| |
|
|
| T |
18279981 |
tagcaaggaagaggttaacatcaagagaaattttcagaatttaacagacatagttttgcatacttcaaactttgaagttgaggcacaggaaac |
18279889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 478
Target Start/End: Complemental strand, 18279750 - 18279657
Alignment:
| Q |
385 |
caggacatgaaattagcaaagcagaggataacatca--agaaaaaatttcagaatataacagacatagttttacatacttcaaactttgaaaatga |
478 |
Q |
| |
|
||||||||||||||||| | ||||||| |||||||| || || | ||||||||||| | |||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
18279750 |
caggacatgaaattagctatgcagaggttaacatcatgagcaatactttcagaatattaaagac--agtttttcatgcttcaaactttgaaaatga |
18279657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 439
Target Start/End: Complemental strand, 18281890 - 18281791
Alignment:
| Q |
341 |
ttaacattaagagaaatctccagattcaaacaaataccctaaa-gcaggacatgaaattagcaaagcagaggataacatcaagaaaaaatttcagaatat |
439 |
Q |
| |
|
||||||| ||||||||| | ||| ||||||| ||||||| || |||||| ||||||| | || ||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
18281890 |
ttaacatcaagagaaattttcaggttcaaactaatacccaaagtgcaggaaatgaaataactaaggcagaggttaatatcaagagaaaatttcagaatat |
18281791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 8e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 580 - 864
Target Start/End: Original strand, 1145074 - 1145356
Alignment:
| Q |
580 |
ctttttcagctccctcaataagtaccatacaggacatgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatcttaaatac |
679 |
Q |
| |
|
||||| || |||||| ||||| ||||||||| |||||||||||||||| |||||||||| ||||| ||||| |||||||||||| ||||| | |
|
|
| T |
1145074 |
cttttgcacctccctgaataattaccatacaagacatgaaattagcaaagcagaggtta--------catcaagagcaaaattttcagaatattaaa--c |
1145163 |
T |
|
| Q |
680 |
agagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttacc |
771 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| || |||||||| | |
|
|
| T |
1145164 |
agagtttttcatgcttcaaactttgaaaatgaaattaaccaggcaagatattttactcgagataaatccgcataaagctttcgagccaaatcattttatc |
1145263 |
T |
|
| Q |
772 |
ctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcag |
864 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
1145264 |
ctccatagtttgcatttcaattctgatactttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcag |
1145356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 54 - 301
Target Start/End: Original strand, 1144684 - 1144931
Alignment:
| Q |
54 |
atgtatactagacatacatgctagaagacttcagttctaaaatggttgcttccaattgaaattatgaaacatgaggatcaacaattcatatatttttc-t |
152 |
Q |
| |
|
||||| |||| | |||| ||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| |||| |||||||| ||||||| | |
|
|
| T |
1144684 |
atgtagactatatatacgtgctagaagacttcagttctaaaatggttccttctaattaaaatgatgaaacatgagaatcatcaattcattgatttttcct |
1144783 |
T |
|
| Q |
153 |
catttggtaagttagagaagaatttgattgttataatgaaccaaatgaaactaaaaccaaagtttcaagcaaatttaaagacaaagttcactcttttggt |
252 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||| || |||| | |||||||||||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
1144784 |
catttggttagtgagagaagaatttgattgttcaaatgaactaa-tgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggt |
1144882 |
T |
|
| Q |
253 |
ttttaaaaatgcaaaaaccaaacttcatcaggcaattggaaatagctta |
301 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1144883 |
ttttaaatatgcaaaaaacaaacttcatcaggcaattggaaatagctta |
1144931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 388 - 478
Target Start/End: Original strand, 1145106 - 1145195
Alignment:
| Q |
388 |
gacatgaaattagcaaagcagaggataacatcaaga--aaaaatttcagaatataacagacatagttttacatacttcaaactttgaaaatga |
478 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| |||| ||||||||||| | ||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
1145106 |
gacatgaaattagcaaagcagagg-ttacatcaagagcaaaattttcagaatat--taaacagagtttttcatgcttcaaactttgaaaatga |
1145195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 820
Target Start/End: Complemental strand, 21120586 - 21120537
Alignment:
| Q |
771 |
cctccatagtttgcatttcaactctgatactttctaagttcccttttaat |
820 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||| | |||||| |
|
|
| T |
21120586 |
cctccatagtttgcatttcaactctgagactttccaagttctcgtttaat |
21120537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 572
Target Start/End: Complemental strand, 21121004 - 21120969
Alignment:
| Q |
537 |
aaataaaaaccaccctacttcatgtttataagatga |
572 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21121004 |
aaataaaaaccagcctacttcatgtttataagatga |
21120969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University