View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_high_18 (Length: 245)
Name: NF3019_1D_high_18
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_high_18 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 36373712 - 36373936
Alignment:
| Q |
21 |
ctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggagggtgtgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373712 |
ctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggagggtgtgt |
36373811 |
T |
|
| Q |
121 |
aaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatatgtggcagttactaaaggtggt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36373812 |
aaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatctgtggcagttactaaaggtggt |
36373911 |
T |
|
| Q |
221 |
ctgagtttggaagaatgcgaggaag |
245 |
Q |
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||||||||||||||||||||||||| |
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| T |
36373912 |
ctgagtttggaagaatgcgaggaag |
36373936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 36397451 - 36397667
Alignment:
| Q |
21 |
ctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggagggtgtgt |
120 |
Q |
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|||||||||||||| |||||||||| || ||| ||| ||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||| |
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| T |
36397451 |
ctttgaactttgagaactttaagtgcacgtgtttacttggttttgaaccaaaatttccaagcgattggtatgagagtagagatgggtcgggagggtgtgt |
36397550 |
T |
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| Q |
121 |
aaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatatgtggcagttactaaaggtggt |
220 |
Q |
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|||||||||||| |||||| | ||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| | || |||| |
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| T |
36397551 |
aaggaagaaaggtgcatctgtctgtgggaatggcgaagggtttatcaaagttgtaagcttgaaagttcctgatatatctggggcagttaccatagatggt |
36397650 |
T |
|
| Q |
221 |
ctgagtttggaagaatg |
237 |
Q |
| |
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|||||||||| ||||| |
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| T |
36397651 |
ttgagtttggatgaatg |
36397667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 36404384 - 36404600
Alignment:
| Q |
21 |
ctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggagggtgtgt |
120 |
Q |
| |
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|||| |||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
36404384 |
cttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggtcgggagggtgtgt |
36404483 |
T |
|
| Q |
121 |
aaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatatgtggcagttactaaaggtggt |
220 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| ||||||||| || |||||| | | || |||| |
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| T |
36404484 |
aaggaagaaaggtgcatctatttgtgggaatggagaagggtttataaaagttgtaagtgtgaaagttgctgatatatctggagcagttgccatagatggt |
36404583 |
T |
|
| Q |
221 |
ctgagtttggaagaatg |
237 |
Q |
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|||||||||||||||| |
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| T |
36404584 |
ttgagtttggaagaatg |
36404600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 36387671 - 36387888
Alignment:
| Q |
21 |
ctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaaga-gatgggtcaggagggtgtg |
119 |
Q |
| |
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|||| |||||||| |||||||||||| ||||| ||| |||| |||||| ||||||||||||||||||||| ||| ||| |||||| | |||||||||| |
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| T |
36387671 |
cttttaactttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtatcagaatagaagatgggacgggagggtgtg |
36387770 |
T |
|
| Q |
120 |
taaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatatgtggcagttactaaaggtgg |
219 |
Q |
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|||||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| ||||| |||| |
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| T |
36387771 |
taaggaagaaaggctcgtctgtttgtgagaatggagaagggtttatcaaagttgtaagcttgaaagttcctgatacatctgtggcagttgctaaaagtgg |
36387870 |
T |
|
| Q |
220 |
tctgagtttggaagaatg |
237 |
Q |
| |
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| |||||||||||||||| |
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| T |
36387871 |
tttgagtttggaagaatg |
36387888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 36369098 - 36369309
Alignment:
| Q |
26 |
aactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaa-tttccacgtgattggtatgagagaagagatgggtcaggagggtgtgtaagg |
124 |
Q |
| |
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|||||||| ||||||||||| |||||| ||| ||||||||| ||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||| |
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| T |
36369098 |
aactttgaagactttaagtgcacttgtttacttggttttgaagcaaaaatttccacgtgattggtatgagata-gagatgggtcgggagggtgtgtaagg |
36369196 |
T |
|
| Q |
125 |
aagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatatgtggcagttactaaaggtggtctga |
224 |
Q |
| |
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|||||||| | ||| ||||| ||||||||||||||||| ||||||||| |||||||||||||| |||| || |||||| ||| ||||||||||| ||| |
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| T |
36369197 |
aagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcccgatacatctgtggcggttgctaaaggtggtttga |
36369296 |
T |
|
| Q |
225 |
gtttggaagaatg |
237 |
Q |
| |
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||||||||||||| |
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| T |
36369297 |
gtttggaagaatg |
36369309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 36411698 - 36411914
Alignment:
| Q |
21 |
ctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggagggtgtgt |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
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| T |
36411698 |
ctttgaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggttgggaggatgtgt |
36411797 |
T |
|
| Q |
121 |
aaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatatgtggcagttactaaaggtggt |
220 |
Q |
| |
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||| || | ||| |||||| ||||| |||||||||||||||||| ||||||| ||| |||||||||||||||||| || ||||||| | | || |||| |
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| T |
36411798 |
aagaaaaagaggtgcatctgtttgtgggaatggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggt |
36411897 |
T |
|
| Q |
221 |
ctgagtttggaagaatg |
237 |
Q |
| |
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||| |||||||||||| |
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| T |
36411898 |
ttgactttggaagaatg |
36411914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 36417029 - 36417245
Alignment:
| Q |
21 |
ctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggagggtgtgt |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
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| T |
36417029 |
ctttgaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggttgggaggatgtgt |
36417128 |
T |
|
| Q |
121 |
aaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatatgtggcagttactaaaggtggt |
220 |
Q |
| |
|
||| || | ||| |||||| ||||| |||||||||||||||||| ||||||| ||| |||||||||||||||||| || ||||||| | | || |||| |
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| T |
36417129 |
aagaaaaagaggtgcatctgtttgtgggaatggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggt |
36417228 |
T |
|
| Q |
221 |
ctgagtttggaagaatg |
237 |
Q |
| |
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||| |||||||||||| |
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| T |
36417229 |
ttgactttggaagaatg |
36417245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 36425864 - 36426035
Alignment:
| Q |
21 |
ctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggagggtgtgt |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||| || ||||| |
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| T |
36425864 |
ctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtcgagatgggtcaggtggatgtgt |
36425963 |
T |
|
| Q |
121 |
aaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctga |
192 |
Q |
| |
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||| |||||||| |||||| ||||| | ||||||||||||||||||||||||| |||| | ||||||||||| |
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| T |
36425964 |
aagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctga |
36426035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 36433724 - 36433937
Alignment:
| Q |
24 |
tgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtcaggagggtgtgtaag |
123 |
Q |
| |
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||||||||| |||||| || ||| ||||| |||| ||||||||||| |||| |||| | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
36433724 |
tgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccaggcgattggtatgagagtggagatgggtcaggagggtgtgtaag |
36433823 |
T |
|
| Q |
124 |
gaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatatgtggcagttactaaaggtggtctg |
223 |
Q |
| |
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|||||| || ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||| | | ||||||||| || |
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|
| T |
36433824 |
gaagaacggttcatctgtttgtgggaatggagaagggtttatcaaaattgtcagcttgaaagttcctgatacatcgatggcaaatgccaaaggtggtttg |
36433923 |
T |
|
| Q |
224 |
agtttggaagaatg |
237 |
Q |
| |
|
|||||||||||||| |
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|
| T |
36433924 |
agtttggaagaatg |
36433937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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