View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_high_2 (Length: 714)
Name: NF3019_1D_high_2
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 122 - 691
Target Start/End: Original strand, 19955361 - 19955932
Alignment:
| Q |
122 |
atccttatatttttggctgtagaagcaaacatatgatcaagtctttgttgtttttattgctgatgatgcaaaggactttgcttctcttttccatctttct |
221 |
Q |
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| T |
19955361 |
atccttatatttttggctgtagaagcaaacctatgatcaagtctttgttgtttttattgctgatgatgcaagggactttgcttctcttttccatctttct |
19955460 |
T |
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| Q |
222 |
aaaatgcaatatccatgtcaccttttgtccactatatccnnnnnnngtcatatttgtcaattatccaaaaaagaaagacttgtacaaattccaattcaaa |
321 |
Q |
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| T |
19955461 |
aaaatgcaatctccatgtcac-ttttgtccactatatccaaaaaaagtcatatttgtcaattatccaaaaaagaaagacttgtacaaattccaattcaaa |
19955559 |
T |
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| Q |
322 |
caagaatagaaaacgtgtgttaaaaataagtgatgaaatctattaccagcctttttctaaaaaacaaatcaattaggttgttaagtaaaattatatcacg |
421 |
Q |
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| T |
19955560 |
caagaaaagaaaacgtgtgttaaaaataagtgatgaaatctattaccagcctttttctaaaaaacaaatcaattaggttgttaagtaaaattatatcacg |
19955659 |
T |
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| Q |
422 |
tttttctctttagaaataatcgaatattttt-actcttatgtattattat--ccaacacacactctctaatgagtcatgacatttacggatatcgcttaa |
518 |
Q |
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| T |
19955660 |
tttttctctttagaaatagtcgaatattttttactcttatgcattattatatccaacacacactctttaatgagtcatgacatttacggatatcgcttaa |
19955759 |
T |
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| Q |
519 |
catgaagcaaccgcacgaatcatgttccaaagttgaaacgtgaaagcttagtatggttacgtgtggggaatcacatgttgaaccaatcaaaaatttagaa |
618 |
Q |
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| T |
19955760 |
catgaagcaaccgcacgaatcatgttccaaagttgaaacgtgaaagcttagtatggttacgtgtggggaatcacatgttgaaccaatcaaaaatttagaa |
19955859 |
T |
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| Q |
619 |
tggtttatttaagtatttaaccatttaatttaatgcaatttgttgtaaataaaaatggttaaataatctcttt |
691 |
Q |
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| T |
19955860 |
tggtttatttaagtatttaaccatttaatttaatgcaatttgttgtaaataaaaatggttaaataatctcttt |
19955932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 269 - 400
Target Start/End: Complemental strand, 20257637 - 20257504
Alignment:
| Q |
269 |
tcatatttgtcaattatccaaaaaagaaagacttgtacaaattccaattcaaacaagaata-gaaaacgtgtgttaaaaataagtgatgaaatctatta- |
366 |
Q |
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| T |
20257637 |
tcatttttatcaattatccaaaaaataaagacttgtgcaaattctatttcaaacaagaaaaccaaaacgtgttttaaaaataagtgattaaatctattac |
20257538 |
T |
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| Q |
367 |
ccagcctttttctaaaaaacaaatcaattaggtt |
400 |
Q |
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| T |
20257537 |
ccagtctttttctaaaaaacaaatagattaggtt |
20257504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 269 - 400
Target Start/End: Complemental strand, 20247065 - 20246933
Alignment:
| Q |
269 |
tcatatttgtcaattatccaaaaaagaaagacttgtacaaattccaattcaaacaagaata-gaaaacgtgtgttaaaaataagtgatgaaatctatta- |
366 |
Q |
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| T |
20247065 |
tcatttttatcaattatccaaaaaataaagacttgtgcaaatttcatttcaaacaagaaaacgaatacgtgtgttaaaaatgagtgattaaatctattac |
20246966 |
T |
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| Q |
367 |
ccagcctttttctaaaaaacaaatcaattaggtt |
400 |
Q |
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| T |
20246965 |
ccagac-ttttctaaaaaacaaatagattaggtt |
20246933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 19955264 - 19955311
Alignment:
| Q |
23 |
cctagtcaaaggtccccacctattttctacctgccatgtgtcctttga |
70 |
Q |
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| T |
19955264 |
cctaatcaaaggttcccacctattttctacctgccatgtgtcctttga |
19955311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 622
Target Start/End: Complemental strand, 45334349 - 45334283
Alignment:
| Q |
557 |
cgtgaaagcttagtatggtt-acgtgtggggaatcacatgttgaaccaatcaaaaatttagaatggt |
622 |
Q |
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| T |
45334349 |
cgtgaaagcgtagtatagtttacgtgtgggtaatcccattttgaaccaatcaaaaattgagaatggt |
45334283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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