View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3019_1D_high_24 (Length: 204)

Name: NF3019_1D_high_24
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3019_1D_high_24
NF3019_1D_high_24
[»] chr1 (5 HSPs)
chr1 (13-204)||(32592498-32592689)
chr1 (69-204)||(31527277-31527412)
chr1 (13-204)||(37030635-37030826)
chr1 (15-141)||(51824717-51824843)
chr1 (146-204)||(51824295-51824353)
[»] chr3 (5 HSPs)
chr3 (13-196)||(49208145-49208328)
chr3 (13-204)||(49188124-49188315)
chr3 (13-204)||(49191860-49192051)
chr3 (13-204)||(49212977-49213168)
chr3 (13-204)||(49202966-49203157)
[»] chr8 (1 HSPs)
chr8 (13-166)||(26756541-26756694)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 32592498 - 32592689
Alignment:
Q  13 attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32592498 attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaagctgctaaagctgtggctctaagggaagctgagttgca 32592597  T
Q  113 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaagg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32592598 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttcagtatgaaaccaagg 32592689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 31527412 - 31527277
Alignment:
Q  69 gtcgaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31527412 gtcgaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt 31527313  T
Q  169 tacttagcaaagctagtgttgagtatgaaaccaagg 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  31527312 tacttagcaaagctagtgttgagtatgaaaccaagg 31527277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 37030826 - 37030635
Alignment:
Q  13 attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 112  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||    || ||||||   ||||||||||||||||| ||    
T  37030826 attctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagttaca 37030727  T
Q  113 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaagg 204  Q
     ||||| ||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||| | |||||||||||||    
T  37030726 aggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaagg 37030635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 51824843 - 51824717
Alignment:
Q  15 tctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgcagg 114  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||| |    
T  51824843 tctgagttggcgatgaagaaagcggcttggactaaggctgctcaagtggctcaagttgaggctgctaaatctgtggttctaagggaagctgagttgcaag 51824744  T
Q  115 gtgaggttgagaggatgaatgctttga 141  Q
    |||||||||||| ||||||||||||||    
T  51824743 gtgaggttgagaagatgaatgctttga 51824717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 51824353 - 51824295
Alignment:
Q  146 tactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaagg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  51824353 tactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaagg 51824295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 49208328 - 49208145
Alignment:
Q  13 attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 112  Q
    |||| |||||||| ||||||||||| |||||||| | ||||||||||||||||||  | |||||||||||||| ||||||||||||||||||||||||||    
T  49208328 attccgagttggctaagaagaaagctgcttggacaatggcggctcaagtggctgagcttgaggctgctaaagccgtggctctaagggaagctgagttgca 49208229  T
Q  113 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatga 196  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  49208228 aggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttccttagcaaagctagtgttgaatatga 49208145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 49188315 - 49188124
Alignment:
Q  13 attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 112  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||    || ||||| |||||||||||||||||||||||    
T  49188315 attctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttgca 49188216  T
Q  113 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaagg 204  Q
     ||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  49188215 aggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaagg 49188124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 49192051 - 49191860
Alignment:
Q  13 attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 112  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||| ||    
T  49192051 attctgaattggctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgccaaagccgtcgctctaagggatgctgagttaca 49191952  T
Q  113 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaagg 204  Q
     ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | |||||||||||||    
T  49191951 aggtgaagttgagaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaagg 49191860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 49213168 - 49212977
Alignment:
Q  13 attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 112  Q
    |||| |||||||| || ||||| || |||||||| ||||||||||| ||||||||||| |||||    || |||||||||||||||||||||||||||||    
T  49213168 attcggagttggccaaaaagaaggctgcttggaccaaggcggctcaggtggctgaagttgaggcgaagaaggctgtggctctaagggaagctgagttgca 49213069  T
Q  113 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaagg 204  Q
     ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  49213068 aggtgaggttgagaagatgaatgctttgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaactaagg 49212977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 49203157 - 49202966
Alignment:
Q  13 attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 112  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||    || || |||||||||||||| |||||||| ||    
T  49203157 attctgagttggctaagaagaaggcagcttggactaaggcggctcaggtggctgaagttgaggcgaagaaggccgtggctctaagggatgctgagttaca 49203058  T
Q  113 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaagg 204  Q
     ||||| ||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| | |||||||| ||||    
T  49203057 aggtgaagttgaaaggatgaatgctttgactactactgagaagcttaaagccgagttccttagcaaagctagtgttcaatatgaaactaagg 49202966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 26756694 - 26756541
Alignment:
Q  13 attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca 112  Q
    |||| |||||| | ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||    
T  26756694 attccgagttgactaagaagaaagcggcttggactaaggcggctcaagtcgctgaagttgaggctgctaaagctgtggcccttagggaagctgagttgca 26756595  T
Q  113 gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctga 166  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  26756594 aggtgaggttgagaggatgaatgctttgactaccactgagaagcttaaacctga 26756541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University