View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_high_6 (Length: 348)
Name: NF3019_1D_high_6
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 1087709 - 1088041
Alignment:
| Q |
10 |
gtgttaattggattccagaagacgatacttggagtgttattgagtcagtgccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaattg |
109 |
Q |
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| T |
1087709 |
gtgttaattggattccagaagacgatacttggagtgttattgagtcgttgccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaattg |
1087808 |
T |
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| Q |
110 |
cgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccacaaaattgggacgcatcaaattggacacaaggatgtgtgcgc |
209 |
Q |
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| T |
1087809 |
cgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccaaaaaattgggacgcatcaaattggacacaaggatgtgtgcgc |
1087908 |
T |
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| Q |
210 |
aaaggtgaagaagattggagatgtggggtgaatgatggttttgtaagattttatggattgaaattgccggatacatcacatacttgggttgatgctaata |
309 |
Q |
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| T |
1087909 |
aaaggtgacgaagattggagatgtggagtgaatgatagttttgtaagattttatggattgaaattgccagatacatcacatacttgggttgatgcaaata |
1088008 |
T |
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| Q |
310 |
tgacacttgagaattgtaagaataaatgcttgg |
342 |
Q |
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| T |
1088009 |
tgacacttgagaattgtaagaataaatgcttgg |
1088041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 1047243 - 1047567
Alignment:
| Q |
18 |
tggattccagaagacgatacttggagtgttattgagtcagtgccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaattgcgttcata |
117 |
Q |
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| T |
1047243 |
tggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagatgattgtgatgtctataatcattgtggcccatatggaaattgcatttata |
1047342 |
T |
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| Q |
118 |
acgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccacaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggtga |
217 |
Q |
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| T |
1047343 |
acccgtctccaatttgtcaatgtttagatgggtttgagcctaaatcaccacaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggcga |
1047442 |
T |
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| Q |
218 |
agaagattggagatgtggggtgaatgatggttttgtaagattttatggattgaaattgccggatacatcacatacttgggttgatgctaatatgacactt |
317 |
Q |
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| T |
1047443 |
agaaacatggaattgtggtgtgaatgatggttttggaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaatatgacactt |
1047542 |
T |
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| Q |
318 |
gagaattgtaagaataaatgcttgg |
342 |
Q |
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| T |
1047543 |
gagaattgtaaaaataaatgcttgg |
1047567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 1072056 - 1072380
Alignment:
| Q |
18 |
tggattccagaagacgatacttggagtgttattgagtcagtgccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaattgcgttcata |
117 |
Q |
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|||| |||||| ||| | |||||||| | |||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
1072056 |
tggagtccagaggacaacacttggagcgatattcagtcagtaccaaaaaatgattgtgatgtctataatcgttgcggcccttatggaaattgcattcata |
1072155 |
T |
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| Q |
118 |
acgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccacaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggtga |
217 |
Q |
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| T |
1072156 |
acccgtctccaatttgccaatgtttagatgggtttgagcctaaatcaccacaaaattggtacgcatcaaattggacacaaggatgtgtgcgcaaaggtga |
1072255 |
T |
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| Q |
218 |
agaagattggagatgtggggtgaatgatggttttgtaagattttatggattgaaattgccggatacatcacatacttgggttgatgctaatatgacactt |
317 |
Q |
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|||| |||| ||||| ||||||||| ||||| || ||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
1072256 |
agaaacatggaattgtggtgtgaatgatcgttttagaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaatatgacactt |
1072355 |
T |
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| Q |
318 |
gagaattgtaagaataaatgcttgg |
342 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
1072356 |
gagaattgtaagaataaatgcttgg |
1072380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 1104270 - 1104594
Alignment:
| Q |
18 |
tggattccagaagacgatacttggagtgttattgagtcagtgccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaattgcgttcata |
117 |
Q |
| |
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|||||||||||||| || |||||| ||| |||| ||| |||| |||||||||||||| |||||||| |||||| ||||||||||| || ||| || |
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| T |
1104270 |
tggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattccta |
1104369 |
T |
|
| Q |
118 |
acgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccacaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggtga |
217 |
Q |
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| T |
1104370 |
atgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgaaaaggcga |
1104469 |
T |
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| Q |
218 |
agaagattggagatgtggggtgaatgatggttttgtaagattttatggattgaaattgccggatacatcacatacttgggttgatgctaatatgacactt |
317 |
Q |
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|||| |||| ||||| |||||||||||||||| || ||||| | | ||||||||||| || ||| ||||| |||||||||||| ||||||||||||| |
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| T |
1104470 |
agaaacatggaattgtggtgtgaatgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttgggttgatggtaatatgacactt |
1104569 |
T |
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| Q |
318 |
gagaattgtaagaataaatgcttgg |
342 |
Q |
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|||||||||||||| |||||||||| |
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| T |
1104570 |
gagaattgtaagaacaaatgcttgg |
1104594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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