View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3019_1D_low_10 (Length: 291)

Name: NF3019_1D_low_10
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3019_1D_low_10
NF3019_1D_low_10
[»] chr8 (1 HSPs)
chr8 (14-291)||(43173305-43173582)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 43173582 - 43173305
Alignment:
Q  14 gaagcagagacaagtatgattggagtgaaatcccatgaatcatggtgaggtacttcatttaaccatatgacagttttctgagaaatccatagaggacgta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43173582 gaagcagagacaagtatgattggagtgaaatcccatgaatcatggtgaggtacttcatttaaccatatgacagttttctgagaaatccatagaggacgta 43173483  T
Q  114 atggtttcttcaaggaagcagagagagaagcaatgtcagccccacttgctttcaattgttctgtccattcctctaagtgctcctcaattgaagccttttc 213  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43173482 atggtttcttcaaggaagcagagagggaagcaatgtcagccccacttgctttcaattgttctgtccattcctctaagtgctcctcaattgaagccttttc 43173383  T
Q  214 tgttaggggaacccaaagtggtaggtgcaaagagcaatcccaatcagagtcctcctgttttatgaaaggcaacggcac 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43173382 tgttaggggaacccaaagtggtaggtgcaaagagcaatcccaatcagagtcctcctgttttatgaaaggtaacggcac 43173305  T

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