View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3019_1D_low_13 (Length: 276)

Name: NF3019_1D_low_13
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3019_1D_low_13
NF3019_1D_low_13
[»] chr3 (2 HSPs)
chr3 (25-272)||(8524971-8525221)
chr3 (136-185)||(14554452-14554501)
[»] chr5 (7 HSPs)
chr5 (84-272)||(42125516-42125704)
chr5 (91-276)||(34230708-34230893)
chr5 (93-272)||(42130741-42130920)
chr5 (91-272)||(34238763-34238944)
chr5 (93-272)||(41711694-41711873)
chr5 (92-272)||(41569923-41570103)
chr5 (93-240)||(42118947-42119097)
[»] chr6 (1 HSPs)
chr6 (84-272)||(25520921-25521109)
[»] chr4 (1 HSPs)
chr4 (95-263)||(11120299-11120467)
[»] chr2 (1 HSPs)
chr2 (93-266)||(12250343-12250516)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 8525221 - 8524971
Alignment:
Q  25 atttcaagtcatccttcattataaattctgaatatgctcatt---atggttgtgatgaattttctcttttgaaaacagcaacatggaaaaatgagactga 121  Q
    |||||||||||||||||| |||||||||||||  |||| |||   ||  ||||||||||| |  |||||||||||||||||||||||||||||||| |||    
T  8525221 atttcaagtcatccttcactataaattctgaacctgcttattcttatttttgtgatgaatctcgtcttttgaaaacagcaacatggaaaaatgagattga 8525122  T
Q  122 ttgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatcctaac 221  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||  || |||||||||||||||||||||||||| ||| |||||||||||    
T  8525121 ttgctgctcatgggatggtgtcacgtgtgacaccatcagtggtcacgtgattggcctcaaccttggctgtgaaggtcttcaaggcatactcaatcctaac 8525022  T
Q  222 agtacccttttccatcttgcttatattcaaaaactcaacctttctaacaat 272  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8525021 agtacccttttccatcttgcttatattcaaaaactcaaccttgctaacaat 8524971  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 14554501 - 14554452
Alignment:
Q  136 atggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaacctt 185  Q
    ||||||||||||| ||||||||  | |||||||||||||||||| |||||    
T  14554501 atggtgtcacgtgcgacaccatatcaggtcacgtgattgaactagacctt 14554452  T

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Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 84 - 272
Target Start/End: Complemental strand, 42125704 - 42125516
Alignment:
Q  84 tctcttttgaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaacc 183  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  || || |    
T  42125704 tctcttctgaaaacagcaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgtgataccatcactcgtcacgtgattggcctcaatc 42125605  T
Q  184 ttggctgtgaaggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaat 272  Q
    ||||||||||||| |||||||||| | |  |||||||||||||||||||| |||||| | || |||||| |||||||||||||||||||    
T  42125604 ttggctgtgaaggccttcaaggtaaactacatcctaacagtacccttttcaatcttgttcatcttcaaacactcaacctttctaacaat 42125516  T

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Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 91 - 276
Target Start/End: Original strand, 34230708 - 34230893
Alignment:
Q  91 tgaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctg 190  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |  |||||||||| ||||  || |||||||||||    
T  34230708 tgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggctg 34230807  T
Q  191 tgaaggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatt 276  Q
    ||||||  ||||||||||| || ||||||| ||||||||||||||||||||| |  ||||||  ||||||||||| ||||||||||    
T  34230808 tgaaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatt 34230893  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 93 - 272
Target Start/End: Complemental strand, 42130920 - 42130741
Alignment:
Q  93 aaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtg 192  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||  || |||||||||||||||| || |||||||||||||    
T  42130920 aaaacagcaacatggaaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaaccttggctgtg 42130821  T
Q  193 aaggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaat 272  Q
    |||| |||  ||||| |||||||||||| ||||||||||| ||||||| | || | |||| ||||||||||||| |||||    
T  42130820 aaggccttacaggtacattcaatcctaatagtaccctttttcatcttgttcatctccaaacactcaacctttcttacaat 42130741  T

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Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 91 - 272
Target Start/End: Original strand, 34238763 - 34238944
Alignment:
Q  91 tgaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctg 190  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |  |||||||||| ||||  || |||||||| ||    
T  34238763 tgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggttg 34238862  T
Q  191 tgaaggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaat 272  Q
    ||||||  ||||||||||| || ||||||| |||||||||||| || ||| | || | |||| |||||||||||||||||||    
T  34238863 tgaaggctttcaaggtatactccatcctaatagtacccttttcaatattgttcatctccaaacactcaacctttctaacaat 34238944  T

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Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 272
Target Start/End: Original strand, 41711694 - 41711873
Alignment:
Q  93 aaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtg 192  Q
    |||||| ||||||||||||||||||||||||| |||||||||   |||||||| ||||||||| ||  ||||| |||| |||  || |||||||||||||    
T  41711694 aaaacaacaacatggaaaaatgagactgattgttgctcatggcccggtgtcacatgtgacaccgtctatggtcgcgtggttggcctcaaccttggctgtg 41711793  T
Q  193 aaggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaat 272  Q
    | || ||||||||||||||| ||||||| | ||| ||||||||||||| | || | |||| ||||||||||||| |||||    
T  41711794 atggccttcaaggtatattccatcctaataatactcttttccatcttgttcatctccaaacactcaacctttcttacaat 41711873  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 272
Target Start/End: Original strand, 41569923 - 41570103
Alignment:
Q  92 gaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgt 191  Q
    ||||||| |||||||||||| ||||||  |||| || |||||| ||||||||||||| ||| |  || |||||| ||||||||  ||  |||||||||||    
T  41569923 gaaaacatcaacatggaaaattgagacaaattgttgttcatggcatggtgtcacgtgcgacgctgtctctggtcgcgtgattggtctcgaccttggctgt 41570022  T
Q  192 gaaggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaat 272  Q
    ||| | |||||||||| | |  |||||||||  || ||||| ||||||||| || | |||  ||||||||||||| |||||    
T  41570023 gaatgccttcaaggtaaaatttatcctaacaacactctttttcatcttgctcatctccaatcactcaacctttctcacaat 41570103  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 42119097 - 42118947
Alignment:
Q  93 aaaacagcaacatggaaaaatgagactgattgctgc---tcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggct 189  Q
    ||||| |||||||||||||||| |||||||||||||   |||||| |||||||| |||||| ||   || |||||||||||||||  || ||||||||||    
T  42119097 aaaactgcaacatggaaaaatgggactgattgctgctcatcatggcatggtgtcgcgtgtgtcagagtctctggtcacgtgattggtctcaaccttggct 42118998  T
Q  190 gtgaaggtcttcaaggtatattcaatcctaacagtacccttttccatcttg 240  Q
     | || | |||   |||| |||  ||||||||| |||||||||||||||||    
T  42118997 tttaacgccttactggtaaattacatcctaacaatacccttttccatcttg 42118947  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 272
Target Start/End: Original strand, 25520921 - 25521109
Alignment:
Q  84 tctcttttgaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaacc 183  Q
    |||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| || |||||||    ||||| ||||||||  || ||||    
T  25520921 tctcttctgaaaacagcaacatggaaatatgggactgattgctgctcatggcatggtgtcacatgcgacaccacttttggtcgcgtgattggcctcaacc 25521020  T
Q  184 ttggctgtgaaggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaat 272  Q
    ||||||||||||| || |||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  25521021 ttggctgtgaaggcctccaaggtatattccatcctaatagtactcttttccatcttgctcatattcaaaaactcaacctttcttacaat 25521109  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 263
Target Start/End: Complemental strand, 11120467 - 11120299
Alignment:
Q  95 aacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaa 194  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||  || || ||||||||||||    
T  11120467 aacaacaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaa 11120368  T
Q  195 ggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctt 263  Q
    ||||||||||| |||||  |||| || ||||||||||||||||||| | || | |||| ||||||||||    
T  11120367 ggtcttcaaggcatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaacctt 11120299  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 266
Target Start/End: Complemental strand, 12250516 - 12250343
Alignment:
Q  93 aaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtg 192  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |||||||| |||  |||||| |||||||  ||  ||||||||  ||    
T  12250516 aaaacagcaacatggcaaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggcctcgaccttggcgatg 12250417  T
Q  193 aaggtcttcaaggtatattcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaacctttct 266  Q
    |||| ||| | ||||||||  | ||||| |||||||||||| |||||||| || | |||| |||||||||||||    
T  12250416 aaggccttgatggtatattacaacctaatagtacccttttcgatcttgctcatctccaaacactcaacctttct 12250343  T

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