View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_low_14 (Length: 269)
Name: NF3019_1D_low_14
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 3683043 - 3683258
Alignment:
| Q |
32 |
ccctattttggttgctgaattttagttttttgtcaacaaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtca |
131 |
Q |
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| T |
3683043 |
ccctattttggttgctgaattttagttttttgtcaacaaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtca |
3683142 |
T |
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| Q |
132 |
atgaaagtgaagatcttgttgggaatattgcttgctttttgtgctgtggtgattctaaagcatactatcacagaccctcattttttctacatagcctctg |
231 |
Q |
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| T |
3683143 |
atgaaagtgaagatcttgttgggaatattgcttgctttttgtgctgtggtgattctaaagcatactatcacagaccctcattttttctacatagcctctg |
3683242 |
T |
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| Q |
232 |
gatcaatccatattat |
247 |
Q |
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|||||||||||||||| |
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| T |
3683243 |
gatcaatccatattat |
3683258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 69 - 247
Target Start/End: Original strand, 3661277 - 3661455
Alignment:
| Q |
69 |
aaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtcaatgaaagtgaagatcttgttgggaatattgcttgctt |
168 |
Q |
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| T |
3661277 |
aaaatgggatcaaagagggattcaccggtgaatgttatgtttggatggctgaggaaaagatcaatgaaagtgaagatctttttgggaatattgcttgctt |
3661376 |
T |
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| Q |
169 |
tttgtgctgtggtgattctaaagcatactatcacagaccctcattttttctacatagcctctggatcaatccatattat |
247 |
Q |
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| T |
3661377 |
tttgtgctattgtggttctaaagcatactatcagagagccaaattttttcttcaaagcctctgaaacagtccatattat |
3661455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 3666146 - 3666291
Alignment:
| Q |
37 |
ttttggttgctgaattttagttttttgtcaacaaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtcaatgaa |
136 |
Q |
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||||||||||| ||||| ||||| |||| ||||||||||||||||| ||||| | | |||||||| ||| | | |||||||| || ||||||||||| |
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| T |
3666146 |
ttttggttgctagatttttatttttggtca-caaaatgggatcaaagaaggattctcccgtgaatgtattgtctagctggttgaggaataggtcaatgaa |
3666244 |
T |
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| Q |
137 |
agtgaagatcttgttgggaatattgcttgctttttgtgctgtggtga |
183 |
Q |
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| T |
3666245 |
agtgaagatctttttgggaatattgcttgctttttgtgctgtggtga |
3666291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 191
Target Start/End: Original strand, 3675641 - 3675765
Alignment:
| Q |
67 |
acaaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtcaatgaaagtgaagatcttgttgggaatattgcttgc |
166 |
Q |
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|||||||||||||||||||||||| | |||||||||||| | ||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |
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| T |
3675641 |
acaaaatgggatcaaagagggattcccctgtgaatgttttgtctatatggttgaggaagagatcaatgaaagtgaaaatctttttgggaatattgcttgc |
3675740 |
T |
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| Q |
167 |
tttttgtgctgtggtgattctaaag |
191 |
Q |
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|||| |||| ||||| ||||||| |
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| T |
3675741 |
attttctgctttggtggctctaaag |
3675765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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