View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_low_15 (Length: 268)
Name: NF3019_1D_low_15
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 43257123 - 43257028
Alignment:
| Q |
80 |
tttggtgttcagaaaggtggtgcaaatagacaattgtggtttgcatcaaagcaaagtctttcttacttggatggcaggtaaattcctacgtagttg |
175 |
Q |
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| T |
43257123 |
tttggtgttcagaaaggtggtgcaaatagacaattgtggtttgcatcaaagcaaagtctttcttacttggatggcaggtaaattcctaagtagttg |
43257028 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 43260724 - 43260629
Alignment:
| Q |
80 |
tttggtgttcagaaaggtggtgcaaatagacaattgtggtttgcatcaaagcaaagtctttcttacttggatggcaggtaaattcctacgtagttg |
175 |
Q |
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| T |
43260724 |
tttggtgttcagcaaaatggagcaaatagacaattgtggtttgcatcaaagcaaagtctttcttacttggatggcaggtaaattcctttgtagttg |
43260629 |
T |
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