View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_low_20 (Length: 246)
Name: NF3019_1D_low_20
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 15618602 - 15618364
Alignment:
| Q |
2 |
aaatggtaagacatatacaaaaagaatagcaaataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagttatc |
101 |
Q |
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| T |
15618602 |
aaatggtaaggcatatacaaaa-gaatagctaataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagttgtc |
15618504 |
T |
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| Q |
102 |
accttgaatagaaaaatagagatctcgcttaagggtgcaaatgatgtccttttttaaactttagtttagatgttcattgttcattatctatgcttttact |
201 |
Q |
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| T |
15618503 |
accttgaatagaaaaatagagatctcgcttaagggtgcaaatgatgtccttttttaaactttagtttagatgttcattgttcattatctatgcttttact |
15618404 |
T |
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| Q |
202 |
agattggcatgttatccagttcgcttggtttaacaccaaa |
241 |
Q |
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| T |
15618403 |
agattggcatgttatccagttcgcttggtttaacaccaaa |
15618364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 8527807 - 8527643
Alignment:
| Q |
34 |
ataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagttatcaccttgaatagaaaaatagagatctcgcttaa |
133 |
Q |
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| T |
8527807 |
ataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgtgattttgaa-aaaaaactacaaatctcatttta |
8527709 |
T |
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| Q |
134 |
gggtgcaaatgatgtccttttt--taaactttagtttagatgttcattgttcattatctatgcttt |
197 |
Q |
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| T |
8527708 |
agatgcaaatgatgtctttttttgtaaaatttaatctagatgttcattaatcattatctgtgcttt |
8527643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 1601250 - 1601314
Alignment:
| Q |
34 |
ataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagtt |
98 |
Q |
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| T |
1601250 |
ataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagtt |
1601314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 1601348 - 1601410
Alignment:
| Q |
133 |
agggtgcaaatgatgtccttttttaaactttagtttagatgttcattgttcattatctatgct |
195 |
Q |
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| T |
1601348 |
aggatgcaaatgatgtctttttgtaaactttaatctagatgttcactaatcattatctatgct |
1601410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 48362895 - 48362951
Alignment:
| Q |
42 |
gaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagtt |
98 |
Q |
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| T |
48362895 |
gaatttccatacactgggcagggttatgttaaatcacaagttatgatttggctagtt |
48362951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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