View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_low_23 (Length: 238)
Name: NF3019_1D_low_23
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 38285391 - 38285281
Alignment:
| Q |
10 |
tgatatgaaatacaaacacatttatct--ataattgttgcaccttacatggatgtagggaatccaaatcttacaatgtaatgagtaaaatttatactcaa |
107 |
Q |
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| T |
38285391 |
tgatatgaaatacaaacacatttatctctataattgttgcaccttacatggatgtagggaatccaaatcttacaatgtaatgagtaaaatttatactcaa |
38285292 |
T |
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| Q |
108 |
aaacatacatg |
118 |
Q |
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| T |
38285291 |
aaacatacatg |
38285281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 38285214 - 38285162
Alignment:
| Q |
186 |
atgaataaaataaactagagtaacagaaattttatttaagccaaactcaaaaa |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38285214 |
atgaataaaataaactagagtaacagaaattttatttaagccaaactcaaaaa |
38285162 |
T |
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