View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_low_25 (Length: 228)
Name: NF3019_1D_low_25
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 6379720 - 6379624
Alignment:
| Q |
103 |
gacaggaacgaaagtgttttcactgtcctgtatttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
200 |
Q |
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| T |
6379720 |
gacaggaaccaaagtgttt-cactgtcatatctttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
6379624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 6384411 - 6384315
Alignment:
| Q |
103 |
gacaggaacgaaagtgttttcactgtcctgtatttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
200 |
Q |
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| T |
6384411 |
gacaggaaccaaagtgttt-cactgtcatatctttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
6384315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 1617341 - 1617437
Alignment:
| Q |
103 |
gacaggaacgaaagtgttttcactgtcctgtatttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
200 |
Q |
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| T |
1617341 |
gacaggaaccaaagtgttt-cactgtcatatctttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
1617437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 1622033 - 1622129
Alignment:
| Q |
103 |
gacaggaacgaaagtgttttcactgtcctgtatttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
200 |
Q |
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| T |
1622033 |
gacaggaaccaaagtgttt-cactgtcatatctttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
1622129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 42574351 - 42574256
Alignment:
| Q |
104 |
acaggaacgaaagtgttttcactgtcctgtatttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
200 |
Q |
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| T |
42574351 |
acaggaaccaaagtgttt-cactgtcatatctttcattgtaaatcagtgttacatatatacagagttttcctatcaaaatccctaaagtcaagccta |
42574256 |
T |
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