View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3019_1D_low_4 (Length: 473)

Name: NF3019_1D_low_4
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3019_1D_low_4
NF3019_1D_low_4
[»] chr4 (29 HSPs)
chr4 (323-473)||(31307078-31307228)
chr4 (326-473)||(38766071-38766218)
chr4 (323-473)||(14854584-14854734)
chr4 (323-473)||(45994501-45994651)
chr4 (323-473)||(35972322-35972472)
chr4 (352-458)||(46016154-46016263)
chr4 (335-473)||(35334110-35334248)
chr4 (323-473)||(13686580-13686731)
chr4 (334-473)||(38844180-38844319)
chr4 (345-458)||(46250582-46250698)
chr4 (374-473)||(9012300-9012399)
chr4 (323-427)||(11140436-11140540)
chr4 (326-473)||(22189400-22189547)
chr4 (335-446)||(56447161-56447272)
chr4 (381-473)||(51626318-51626410)
chr4 (379-473)||(13948604-13948698)
chr4 (339-473)||(17135092-17135225)
chr4 (325-473)||(7096077-7096225)
chr4 (322-473)||(32005158-32005314)
chr4 (323-448)||(45695845-45695970)
chr4 (323-425)||(51853677-51853778)
chr4 (325-444)||(10199148-10199264)
chr4 (367-455)||(47023425-47023513)
chr4 (358-473)||(14042843-14042958)
chr4 (323-368)||(25768769-25768814)
chr4 (412-473)||(33529325-33529386)
chr4 (354-422)||(48998068-48998136)
chr4 (414-473)||(9455565-9455624)
chr4 (326-424)||(16547415-16547514)
[»] chr7 (33 HSPs)
chr7 (320-473)||(29059781-29059934)
chr7 (338-473)||(31492097-31492232)
chr7 (323-469)||(13254117-13254263)
chr7 (319-473)||(8839293-8839447)
chr7 (323-458)||(19477276-19477411)
chr7 (320-473)||(21747052-21747204)
chr7 (318-450)||(28537364-28537496)
chr7 (323-455)||(40099302-40099434)
chr7 (321-473)||(46373650-46373802)
chr7 (325-434)||(2657887-2657996)
chr7 (323-456)||(7265342-7265475)
chr7 (335-458)||(27484076-27484199)
chr7 (321-473)||(35707824-35707975)
chr7 (401-471)||(14545000-14545070)
chr7 (325-429)||(7190415-7190519)
chr7 (386-473)||(11486756-11486843)
chr7 (325-450)||(42741843-42741972)
chr7 (326-473)||(20207480-20207626)
chr7 (373-473)||(24172236-24172338)
chr7 (356-430)||(40211965-40212039)
chr7 (323-420)||(2371127-2371224)
chr7 (335-452)||(24512617-24512734)
chr7 (353-430)||(24579507-24579584)
chr7 (334-422)||(5905812-5905900)
chr7 (356-422)||(2871038-2871104)
chr7 (355-425)||(12142637-12142707)
chr7 (353-430)||(4059748-4059824)
chr7 (364-473)||(23933663-23933772)
chr7 (335-395)||(32469921-32469981)
chr7 (415-473)||(37339745-37339803)
chr7 (353-422)||(37900434-37900503)
chr7 (353-422)||(37906945-37907014)
chr7 (358-430)||(18038078-18038150)
[»] chr8 (27 HSPs)
chr8 (321-473)||(4125036-4125188)
chr8 (323-473)||(2743912-2744062)
chr8 (323-473)||(30935983-30936133)
chr8 (323-473)||(12958097-12958247)
chr8 (335-473)||(13468757-13468895)
chr8 (329-458)||(19715753-19715882)
chr8 (343-469)||(15682928-15683054)
chr8 (335-473)||(30056013-30056151)
chr8 (323-473)||(36994512-36994662)
chr8 (334-458)||(35206990-35207114)
chr8 (395-473)||(7839265-7839343)
chr8 (336-431)||(27121804-27121899)
chr8 (323-379)||(39086797-39086853)
chr8 (325-397)||(44705653-44705725)
chr8 (351-455)||(16701409-16701513)
chr8 (353-456)||(44638992-44639095)
chr8 (326-449)||(23981507-23981632)
chr8 (380-473)||(24988530-24988628)
chr8 (315-430)||(28377629-28377744)
chr8 (335-449)||(32422808-32422923)
chr8 (330-444)||(10030944-10031058)
chr8 (323-401)||(13005753-13005831)
chr8 (349-473)||(21032302-21032425)
chr8 (356-431)||(4321558-4321633)
chr8 (411-456)||(8034158-8034203)
chr8 (370-430)||(8878150-8878210)
chr8 (323-391)||(33404376-33404444)
[»] chr5 (18 HSPs)
chr5 (322-473)||(10591905-10592056)
chr5 (323-473)||(30784998-30785148)
chr5 (335-473)||(31113325-31113463)
chr5 (326-473)||(18909313-18909457)
chr5 (323-434)||(28023494-28023605)
chr5 (322-446)||(2798354-2798477)
chr5 (385-473)||(5123510-5123598)
chr5 (322-446)||(2804521-2804644)
chr5 (334-473)||(22188010-22188147)
chr5 (323-455)||(10795348-10795478)
chr5 (339-429)||(12682630-12682720)
chr5 (410-473)||(36212962-36213025)
chr5 (365-423)||(12336090-12336148)
chr5 (362-456)||(35774603-35774697)
chr5 (353-449)||(12487303-12487398)
chr5 (353-423)||(23422731-23422801)
chr5 (334-430)||(3525909-3526004)
chr5 (333-377)||(10676517-10676561)
[»] chr2 (41 HSPs)
chr2 (327-473)||(5394380-5394525)
chr2 (323-442)||(44732616-44732735)
chr2 (323-473)||(42745128-42745278)
chr2 (323-471)||(31579243-31579391)
chr2 (319-427)||(37568785-37568893)
chr2 (323-456)||(12133259-12133392)
chr2 (322-473)||(18105374-18105525)
chr2 (323-471)||(9438150-9438298)
chr2 (326-456)||(993736-993865)
chr2 (325-447)||(7157479-7157601)
chr2 (233-325)||(19955916-19956008)
chr2 (323-473)||(17981477-17981626)
chr2 (322-409)||(28365927-28366014)
chr2 (323-473)||(44752206-44752356)
chr2 (325-473)||(7020372-7020518)
chr2 (328-455)||(17627543-17627670)
chr2 (321-454)||(17672608-17672741)
chr2 (323-431)||(33756956-33757064)
chr2 (353-473)||(38373006-38373124)
chr2 (358-473)||(14121894-14122009)
chr2 (353-455)||(17658471-17658573)
chr2 (335-458)||(39401096-39401219)
chr2 (322-430)||(24359543-24359650)
chr2 (421-473)||(25423821-25423873)
chr2 (373-473)||(37180013-37180108)
chr2 (373-473)||(38743767-38743867)
chr2 (322-422)||(44814812-44814914)
chr2 (325-423)||(3772605-3772703)
chr2 (90-148)||(19956085-19956143)
chr2 (335-421)||(42905689-42905774)
chr2 (340-456)||(24412956-24413071)
chr2 (353-422)||(38463964-38464033)
chr2 (323-387)||(19252590-19252654)
chr2 (327-399)||(40688817-40688888)
chr2 (381-455)||(13986967-13987041)
chr2 (381-455)||(13992865-13992939)
chr2 (350-408)||(14757680-14757738)
chr2 (17-54)||(19956153-19956190)
chr2 (371-455)||(2562375-2562459)
chr2 (365-409)||(25988641-25988685)
chr2 (326-362)||(45414039-45414075)
[»] scaffold0182 (1 HSPs)
scaffold0182 (345-457)||(26332-26444)
[»] chr3 (26 HSPs)
chr3 (322-473)||(30995977-30996128)
chr3 (323-473)||(27763702-27763850)
chr3 (323-473)||(25224678-25224828)
chr3 (323-471)||(48204325-48204473)
chr3 (325-457)||(38331109-38331241)
chr3 (323-448)||(38088614-38088739)
chr3 (323-431)||(14352533-14352645)
chr3 (385-473)||(20861289-20861377)
chr3 (326-436)||(42514586-42514698)
chr3 (381-473)||(55123134-55123226)
chr3 (335-473)||(40294603-40294741)
chr3 (346-456)||(48210989-48211099)
chr3 (326-473)||(15283057-15283200)
chr3 (351-425)||(22755651-22755725)
chr3 (325-429)||(22288216-22288320)
chr3 (325-388)||(46604657-46604720)
chr3 (323-422)||(3765225-3765326)
chr3 (372-456)||(11767138-11767222)
chr3 (382-456)||(1642644-1642718)
chr3 (334-424)||(28967243-28967333)
chr3 (351-424)||(54877840-54877913)
chr3 (380-473)||(15446028-15446125)
chr3 (349-417)||(20711771-20711839)
chr3 (323-397)||(2195602-2195676)
chr3 (356-473)||(43621323-43621444)
chr3 (361-421)||(20616145-20616205)
[»] chr1 (38 HSPs)
chr1 (323-473)||(22022099-22022249)
chr1 (322-473)||(16756060-16756211)
chr1 (320-431)||(45806212-45806323)
chr1 (341-473)||(12035546-12035679)
chr1 (323-471)||(9781003-9781146)
chr1 (323-473)||(28724652-28724801)
chr1 (355-473)||(18428154-18428271)
chr1 (335-424)||(29124736-29124825)
chr1 (325-458)||(10840998-10841132)
chr1 (334-455)||(24801371-24801492)
chr1 (335-422)||(17600561-17600648)
chr1 (382-473)||(36806649-36806740)
chr1 (356-430)||(32883625-32883699)
chr1 (325-473)||(10750579-10750726)
chr1 (326-430)||(35692467-35692571)
chr1 (323-382)||(14500361-14500420)
chr1 (335-430)||(36982346-36982441)
chr1 (378-457)||(39547392-39547471)
chr1 (358-473)||(46864105-46864220)
chr1 (356-430)||(31733746-31733820)
chr1 (404-473)||(42297454-42297523)
chr1 (339-427)||(52912616-52912702)
chr1 (334-430)||(40019231-40019327)
chr1 (335-430)||(25655319-25655414)
chr1 (340-458)||(36522263-36522381)
chr1 (380-445)||(7242847-7242912)
chr1 (339-444)||(7624870-7624973)
chr1 (353-409)||(21774612-21774668)
chr1 (335-431)||(32534074-32534170)
chr1 (335-423)||(36086848-36086936)
chr1 (415-473)||(44913180-44913238)
chr1 (335-424)||(28506280-28506369)
chr1 (337-455)||(33059756-33059870)
chr1 (415-458)||(15642526-15642569)
chr1 (346-408)||(9066128-9066190)
chr1 (372-422)||(48728057-48728107)
chr1 (354-455)||(13546436-13546537)
chr1 (353-393)||(38465759-38465799)
[»] chr6 (21 HSPs)
chr6 (334-473)||(12411138-12411277)
chr6 (322-458)||(31412101-31412236)
chr6 (323-473)||(21910184-21910333)
chr6 (326-471)||(423637-423782)
chr6 (339-473)||(21028991-21029129)
chr6 (352-429)||(28099251-28099328)
chr6 (377-473)||(12836909-12837005)
chr6 (322-473)||(25084012-25084163)
chr6 (325-473)||(15614585-15614733)
chr6 (335-456)||(31107522-31107643)
chr6 (326-472)||(278374-278519)
chr6 (323-444)||(5944821-5944942)
chr6 (335-424)||(27735469-27735557)
chr6 (335-426)||(3237911-3238002)
chr6 (325-444)||(26477740-26477859)
chr6 (323-427)||(35224550-35224651)
chr6 (325-458)||(28933119-28933252)
chr6 (354-445)||(7468581-7468671)
chr6 (358-429)||(29185307-29185378)
chr6 (401-473)||(21028854-21028924)
chr6 (353-421)||(33792980-33793048)
[»] scaffold0020 (1 HSPs)
scaffold0020 (320-409)||(167831-167918)
[»] scaffold0009 (2 HSPs)
scaffold0009 (328-419)||(32330-32421)
scaffold0009 (414-473)||(27237-27296)
[»] scaffold0189 (1 HSPs)
scaffold0189 (365-444)||(10973-11052)
[»] scaffold0071 (1 HSPs)
scaffold0071 (380-473)||(16067-16164)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 31307228 - 31307078
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31307228 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 31307129  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  31307128 agggagagcctgccgcccatttgggtcccacaatgctcgagggattagtct 31307078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 326 - 473
Target Start/End: Original strand, 38766071 - 38766218
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  38766071 caagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatccagccttgggcatgcagcagcgttaaaactcttagg 38766170  T
Q  426 gagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||| ||||| |||||||||||| |||||||| | ||||||||||||    
T  38766171 gagagtctgccgcccatttgggtctcacaatgctcgagggattagtct 38766218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 14854584 - 14854734
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  14854584 acccaagagcgcttagatgagatggaacggttctcttctagcttaaccaaggttctgggttcgaatccagccttgggcatgcagcatcgttaaaactctt 14854683  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| |||| ||||||||||||| ||||| | | ||||||||||||    
T  14854684 agggagagcttgccgcccatttgggtccaacaattctcgagggattagtct 14854734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 45994501 - 45994651
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||  ||||||||||||    
T  45994501 acccaagagcgtttagatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatgcaacaacgttaaaactctt 45994600  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||| | |||||||||||| |||||||| | || |||||||||    
T  45994601 agggagagcctgacgcccatttgggtctcacaatgctcgagagattagtct 45994651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 35972322 - 35972472
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||| ||    
T  35972322 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcttgggttcgaatccagccatgggcatacagcagcgttaaaactatt 35972421  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||  |||| |||||||||||||||| |||  | ||||||||||||    
T  35972422 agggagagtttgccgcccatttgggtcccactatgttcgagggattagtct 35972472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 352 - 458
Target Start/End: Original strand, 46016154 - 46016263
Alignment:
Q  352 ggtctcttctagcttaaccaag---gtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggt 448  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46016154 ggtctcttctagcttaaccaagtaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggt 46016253  T
Q  449 cccacaatgc 458  Q
    ||||||||||    
T  46016254 cccacaatgc 46016263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 335 - 473
Target Start/End: Complemental strand, 35334248 - 35334110
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    ||||||||||||||||  ||||||||||||||||||||||| || |||||| || |||||||||||||||||||| |||||||||||||| ||||| | |    
T  35334248 ttagatgagatggaacaagtctcttctagcttaaccaaggttcttggttcgtattcagccttgggcatgcagcagagttaaaactcttagagagagtccg 35334149  T
Q  435 ccacccatttgggtcccacaatgccccagggattagtct 473  Q
    || ||||||||||||||||||| | | ||||||||||||    
T  35334148 ccgcccatttgggtcccacaatactcgagggattagtct 35334110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 13686580 - 13686731
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  13686580 acccaagagcgcttagatgagatggcatgggtctcttcttgcttaaccaaggtcctgggttcgaatccatccttgggcgtgcagcagcgttaaaactctt 13686679  T
Q  423 -agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
     ||||||||  ||||  ||||||||||| ||||| || | || |||||||||    
T  13686680 aagggagagtttgccgtccatttgggtctcacaaggctcgagagattagtct 13686731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 334 - 473
Target Start/End: Complemental strand, 38844319 - 38844180
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcct 433  Q
    |||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||| ||| ||||||||||||||| |||| ||    
T  38844319 cttaaatgagatggaacgagtctcttctagcttaaccaaggtcatgagttcgaatccagctttgggcatgcaacagcgttaaaactcttaggaagagtct 38844220  T
Q  434 gccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||| ||||||||   |||||||||| | || |||||||||    
T  38844219 gccgcccatttgacccccacaatgctcgagagattagtct 38844180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 345 - 458
Target Start/End: Complemental strand, 46250698 - 46250582
Alignment:
Q  345 tggaacgggtctcttctagcttaaccaag---gtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccaccca 441  Q
    ||||||||| |||||||||||||||||||   ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  46250698 tggaacggggctcttctagcttaaccaagtaggtcctaggttcgaatccagtcttgggcatgcagcagtgttaaaactcttatggaaagcctgccgccca 46250599  T
Q  442 tttgggtcccacaatgc 458  Q
    |||||||||||| ||||    
T  46250598 tttgggtcccacgatgc 46250582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 374 - 473
Target Start/End: Original strand, 9012300 - 9012399
Alignment:
Q  374 gtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||||    
T  9012300 gtcctgggttcgaatctagccttgggcatgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtct 9012399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 323 - 427
Target Start/End: Original strand, 11140436 - 11140540
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| ||||||| ||||   |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  11140436 acccaagagcgcttagataagataacacggctatcttctagcttaaccaaggtcctggtttcgaatccagccttgggcatgcagcagctttaaaactctt 11140535  T
Q  423 aggga 427  Q
    |||||    
T  11140536 aggga 11140540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 326 - 473
Target Start/End: Complemental strand, 22189547 - 22189400
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    |||||||||||||||||||||  | | ||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||   ||||||||||||||    
T  22189547 caagagcacttagatgagatgacatgagtctcttctagcttaaccaaggtccagagttcgaatccaaccttgtgcatgcagcaacattaaaactcttagg 22189448  T
Q  426 gagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
     ||||  |||| || || |||||||||||| || | ||| ||||||||    
T  22189447 tagagattgccgcctatatgggtcccacaaggctcgaggaattagtct 22189400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 335 - 446
Target Start/End: Complemental strand, 56447272 - 56447161
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    ||||| ||||||  |||||| |||||||| |||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||  ||    
T  56447272 ttagaagagatgtcacgggtttcttctagtttaaccaaagtcctaggttcgaatccagctatgggcatgcagcagtgttaaaactcttagggagagtttg 56447173  T
Q  435 ccacccatttgg 446  Q
    | ||||||||||    
T  56447172 ctacccatttgg 56447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 381 - 473
Target Start/End: Complemental strand, 51626410 - 51626318
Alignment:
Q  381 gttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||  |||||||||||||||| ||| | || |||||||||    
T  51626410 gttcgaatccagccttgggcatgcagcagtgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtct 51626318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 379 - 473
Target Start/End: Complemental strand, 13948698 - 13948604
Alignment:
Q  379 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||  |||||||  || |||||||| | ||||||||||||    
T  13948698 gggttcgaatccagccttgggtatgcagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtct 13948604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 473
Target Start/End: Original strand, 17135092 - 17135225
Alignment:
Q  339 atgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccac 438  Q
    ||||||||  ||| |||||||||||||||| ||| ||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||| |    
T  17135092 atgagatgacacgtgtctcttctagcttaatcaaagtcctag-ttcgaatccagccttgtgcatgcagcagcgttaaaactcttagggagagtttgccgc 17135190  T
Q  439 ccatttgggtcccacaatgccccagggattagtct 473  Q
     |||||| |||||| ||  | | ||||||||||||    
T  17135191 gcatttgagtcccagaagactcgagggattagtct 17135225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 325 - 473
Target Start/End: Original strand, 7096077 - 7096225
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||| | |||||||||||||  || ||| ||||||||||||||||||||  |||||| |||| ||| |||| | ||||||||  ||||||||||||||    
T  7096077 ccaagaacgcttagatgagatgacacaggtttcttctagcttaaccaaggttttgggtttgaatacagtcttgagtatgcagcaaagttaaaactcttag 7096176  T
Q  425 ggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||| | || ||||||| ||||  ||||||| | || |||||||||    
T  7096177 ggagagcttaccgcccatttaggtcttacaatgctcaagagattagtct 7096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 322 - 473
Target Start/End: Complemental strand, 32005314 - 32005158
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcag-----cagtgttaaa 416  Q
    ||||||||||  ||| ||||||||||||  ||||||||||| ||||||||| |||||| |||||||| |||| |||||||||||      ||||||||||    
T  32005314 aacccaagagagcttggatgagatggaataggtctcttctaacttaaccaaagtcctgagttcgaattcagctttgggcatgcattgcatcagtgttaaa 32005215  T
Q  417 actcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||| ||||| || |||| | || || ||||| | || |||||||||    
T  32005214 actcttagggagagtctgccgcctatttagatctcaaaatgctcgagagattagtct 32005158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 448
Target Start/End: Complemental strand, 45695970 - 45695845
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||| | |||||||||||| ||||| |||| |||||| || |||||||||||||||| ||||||| ||||| ||||| ||||| ||||||| | ||    
T  45695970 acccaagaacgcttagatgagatagaacgagtcttttctagtttgaccaaggtcctgggtttgaatccaaccttgagcatgtagcagcgttaaaattttt 45695871  T
Q  423 agggagagcctgccacccatttgggt 448  Q
    | ||||||| || |  ||||||||||    
T  45695870 aaggagagcttgtcgtccatttgggt 45695845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 425
Target Start/End: Original strand, 51853677 - 51853778
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| |||||||||||| ||| | |||||||||| ||||||||| || || ||||||||| ||||||||||||||||||    |||||||||||    
T  51853677 acccaagagcgcttagatgagatagaatgagtctcttctaacttaaccaaagttct-ggttcgaattcagccttgggcatgcagcttccttaaaactctt 51853775  T
Q  423 agg 425  Q
    |||    
T  51853776 agg 51853778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 444
Target Start/End: Complemental strand, 10199264 - 10199148
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||  |||||||||||||||||||||||||| || ||||||||||||| || |||||||||||  |||| |||||  |||| |||||||  ||||     
T  10199264 ccaagagtgcttagatgagatggaacgggtctcttataacttaaccaaggtcttgtgttcgaatcca-acttgagcatgtggcagcgttaaaa--cttaa 10199168  T
Q  425 ggagagcctgccacccattt 444  Q
    ||||||| |||| |||||||    
T  10199167 ggagagcttgccgcccattt 10199148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 455
Target Start/End: Original strand, 47023425 - 47023513
Alignment:
Q  367 aaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaa 455  Q
    |||||||||||| ||||| ||||||| ||| |||||||| ||  ||||||||||||||||||||  || |  |||||||||||||||||    
T  47023425 aaccaaggtccttggttccaatccagacttaggcatgcaacaaagttaaaactcttagggagagtttgtcgtccatttgggtcccacaa 47023513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 473
Target Start/End: Original strand, 14042843 - 14042958
Alignment:
Q  358 ttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatg 457  Q
    ||||| ||||||||| || ||||||||||||| || |||||||||||||| | ||| |||||||| |||||| | || |  |||||||| | ||||||||    
T  14042843 ttctaacttaaccaacgttctgggttcgaatcaagtcttgggcatgcagccgcgtttaaactcttggggagaacatgtcgtccatttggattccacaatg 14042942  T
Q  458 ccccagggattagtct 473  Q
    | | ||||||| ||||    
T  14042943 ctcaagggatttgtct 14042958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 25768814 - 25768769
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaa 368  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  25768814 acccaagagcgcttagatgagatggaacgggtctcttctagtttaa 25768769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 473
Target Start/End: Original strand, 33529325 - 33529386
Alignment:
Q  412 ttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |   ||||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtct 33529386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 48998136 - 48998068
Alignment:
Q  354 tctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||| || ||||| |||||||||| ||||||||| || ||||| |||||| ||| ||||||||||||    
T  48998136 tctcttttaacttaatcaaggtcctgagttcgaatcgagtcttggacatgcatcagcgttaaaactctt 48998068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 9455624 - 9455565
Alignment:
Q  414 aaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||| ||||| |||||| |||||| |||||||||||| | || |||||||||    
T  9455624 aaaactcttaggaagagcttgccactcatttgagtcccacaatgctcgagagattagtct 9455565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 16547514 - 16547415
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaacc-aaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||| |||| |||||||||| |  | ||||||||||||||||| |||||| || |||| |||||| | |||||  |||| |||||||||| |||||||    
T  16547514 caagagaacttggatgagatggtaatgatctcttctagcttaaccaaaggtcatgagttcaaatccaactttgggattgcaacagtgttaaatctcttag 16547415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 29059781 - 29059934
Alignment:
Q  320 ttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaact 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059781 ttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaact 29059880  T
Q  420 cttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||||||||||| |||||||||||||||||||||   ||||||||||||    
T  29059881 cttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtct 29059934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 338 - 473
Target Start/End: Original strand, 31492097 - 31492232
Alignment:
Q  338 gatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgcca 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31492097 gatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccg 31492196  T
Q  438 cccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||| ||||||||||||| | ||||||||||||    
T  31492197 cccatttaggtcccacaatgctcgagggattagtct 31492232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 323 - 469
Target Start/End: Complemental strand, 13254263 - 13254117
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||||    
T  13254263 acccaagagcgcttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagcgttgaaactctt 13254164  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggatta 469  Q
    |||||||||||||| ||||||| ||||||||||||| | ||||||||    
T  13254163 agggagagcctgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 319 - 473
Target Start/End: Complemental strand, 8839447 - 8839293
Alignment:
Q  319 tttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaac 418  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8839447 tttaacccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaac 8839348  T
Q  419 tcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||  ||||| || |||| | ||||||||| | | ||||||||||||    
T  8839347 tcttagggagaatctgccgcctatttagatcccacaatactcgagggattagtct 8839293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 323 - 458
Target Start/End: Complemental strand, 19477411 - 19477276
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  19477411 acccaagagcgtttagatgagatggaacgggtctcttctagcttaaccaaggttctgggtttgaatccagccttgggcatgcaacagtgttaaaactctt 19477312  T
Q  423 agggagagcctgccacccatttgggtcccacaatgc 458  Q
    ||||||||| ||||  ||||||||||||||||||||    
T  19477311 agggagagcttgccggccatttgggtcccacaatgc 19477276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 320 - 473
Target Start/End: Complemental strand, 21747204 - 21747052
Alignment:
Q  320 ttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaact 419  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||    
T  21747204 ttaacccaagagcgtttagatgagatggaacgggtctcttctaacttaaccaaggtcctgggt-cgaatccagctttaggcatgctgcagcgttaaaact 21747106  T
Q  420 cttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||| |||||||||||||||||||||| | | ||||||||||||    
T  21747105 cttagggagagcctaccacccatttgggtcccacaatcctcgagggattagtct 21747052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 318 - 450
Target Start/End: Original strand, 28537364 - 28537496
Alignment:
Q  318 atttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaa 417  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||| ||  |||||||    
T  28537364 attttacccaagagcgcttagatgagatggaacgggtctcttctaacttaatcaaggttttgggttcgaatccagccttgggcatgcaacaacgttaaaa 28537463  T
Q  418 ctcttagggagagcctgccacccatttgggtcc 450  Q
    ||||||||||||||||||| |||||||||||||    
T  28537464 ctcttagggagagcctgccgcccatttgggtcc 28537496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 40099434 - 40099302
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||||  |||||||||||| ||||  |||||||||  |||||||||||    
T  40099434 acccgagagcgcttagatgagatggaacgggtctcttctagcttaactaagatcctgaattcgaatccagctttggatatgcagcagcattaaaactctt 40099335  T
Q  423 agggagagcctgccacccatttgggtcccacaa 455  Q
    ||||||||| |||| |||||||| |||||||||    
T  40099334 agggagagcttgccgcccatttgagtcccacaa 40099302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 321 - 473
Target Start/End: Original strand, 46373650 - 46373802
Alignment:
Q  321 taacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 420  Q
    |||||||||||| |||||||||||||   ||||||||||||||||||| |||| |||||||||||||||||| ||||||||| || ||  ||||||||||    
T  46373650 taacccaagagctcttagatgagatgacgcgggtctcttctagcttaagcaagatcctgggttcgaatccagtcttgggcatacaacatcgttaaaactc 46373749  T
Q  421 ttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
     |||||||||| |||| || ||||||||| |||||||| | || |||||||||    
T  46373750 gtagggagagcttgccgcctatttgggtcacacaatgctcgagagattagtct 46373802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 325 - 434
Target Start/End: Complemental strand, 2657996 - 2657887
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||| |||||||||||||||||| |||||||||| ||||| ||||| |||| |||| ||| |||||||||||||||||||  |||||||||||||     
T  2657996 ccaagagcgcttagatgagatggaacgagtctcttctaacttaatcaaggccctgagttcaaatacagccttgggcatgcagcaacgttaaaactcttaa 2657897  T
Q  425 ggagagcctg 434  Q
    ||||||||||    
T  2657896 ggagagcctg 2657887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 456
Target Start/End: Complemental strand, 7265475 - 7265342
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||  ||| ||||||||  |||||||||||||||||||||||| ||  |||||||| ||| || ||||||||||||||  |||||||||||||    
T  7265475 acccaagagcgtttatatgagatgacacgggtctcttctagcttaaccaaagttttgggttcggatctagtcttgggcatgcagcgatgttaaaactctt 7265376  T
Q  423 agggagagcctgccacccatttgggtcccacaat 456  Q
    ||||||||  |||  | |||||||||||||||||    
T  7265375 agggagagtttgctgctcatttgggtcccacaat 7265342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 458
Target Start/End: Complemental strand, 27484199 - 27484076
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    ||||||||||||  ||  ||||||||||||||||||||||||||| |||  ||||||||| |||||||||||||| |||||||||||| |||||||| |     
T  27484199 ttagatgagatgacacaagtctcttctagcttaaccaaggtcctgagtttaaatccagccatgggcatgcagcagcgttaaaactcttggggagagcttt 27484100  T
Q  435 ccacccatttgggtcccacaatgc 458  Q
    ||| | ||||||||| ||| ||||    
T  27484099 ccatcgatttgggtctcacgatgc 27484076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 473
Target Start/End: Original strand, 35707824 - 35707975
Alignment:
Q  321 taacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 420  Q
    ||||||||||||  |||||| |||| |||| |||||||||||| ||||||||||| |||| |||||||||| | |||| |||||| ||  ||||||| ||    
T  35707824 taacccaagagcgtttagattagattgaacaggtctcttctagtttaaccaaggttctgg-ttcgaatccaactttggacatgcaacaacgttaaaattc 35707922  T
Q  421 ttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| | |||| ||||||| | ||| ||||||| | ||||||||||||    
T  35707923 ttagggagaacttgcctcccatttagatcctacaatgctcgagggattagtct 35707975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 401 - 471
Target Start/End: Original strand, 14545000 - 14545070
Alignment:
Q  401 atgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagt 471  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | | ||||||||    
T  14545000 atgcagcagtgttaaaactcttagggagagcctgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 429
Target Start/End: Complemental strand, 7190519 - 7190415
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    ||||||||  |||||||||||||||    ||||||||||||||||||||||  || ||| |||| |||| ||||||||||||| ||||||||||| ||||    
T  7190519 ccaagagcgtttagatgagatggaataaatctcttctagcttaaccaaggttatgagtttgaattcagcattgggcatgcagccgtgttaaaacttttag 7190420  T
Q  425 ggaga 429  Q
    |||||    
T  7190419 ggaga 7190415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 11486843 - 11486756
Alignment:
Q  386 aatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||||||| | ||||||||||||||| | ||||| |||| ||||||||||| ||||||||| | || |||||||||    
T  11486843 aatccagccttgggcatgcatctgtgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtct 11486756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 450
Target Start/End: Complemental strand, 42741972 - 42741843
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatcc-agccttgggcat----gcagcagtgttaaaact 419  Q
    ||||||||  |||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||   || ||  | |||    |||||||||||||||||    
T  42741972 ccaagagcgtttagatgagatggaacaggtctcttctatcttaaccaatgtcctaggttcgaatattagtctccg-catttgcgcagcagtgttaaaact 42741874  T
Q  420 cttagggagagcctgccacccatttgggtcc 450  Q
     ||||||||| ||||||||||||||||||||    
T  42741873 tttagggagaacctgccacccatttgggtcc 42741843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 473
Target Start/End: Original strand, 20207480 - 20207626
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    ||||||| |||||||||||||  | || | |||||||||||||| ||| |  ||||||| ||| ||||||| |||||| | ||  ||||||||||||| |    
T  20207480 caagagcgcttagatgagatgatatggatttcttctagcttaactaagatt-tgggttctaattcagccttaggcatgtaacaacgttaaaactcttaag 20207578  T
Q  426 gagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||| |||| | ||||||| ||| ||||||| | ||||||||||||    
T  20207579 gagagcttgccgcgcatttggatcctacaatgctcgagggattagtct 20207626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 373 - 473
Target Start/End: Original strand, 24172236 - 24172338
Alignment:
Q  373 ggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaa--ctcttagggagagcctgccacccatttgggtcccacaatgccccagggattag 470  Q
    ||||||||||||||||||| ||||||||||||| ||  |||||||  ||||||| |||||| |||| |||| |||| ||||||||||| | | |||||||    
T  24172236 ggtcctgggttcgaatccaaccttgggcatgcaacaacgttaaaactctcttagtgagagcttgccgcccacttggatcccacaatgctcgaaggattag 24172335  T
Q  471 tct 473  Q
    |||    
T  24172336 tct 24172338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 40211965 - 40212039
Alignment:
Q  356 tcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    |||| |||||||| ||||||| ||||||| ||||||| |||||||||||| ||  ||||||||||||||| ||||    
T  40211965 tcttttagcttaatcaaggtcatgggttcaaatccagtcttgggcatgcaacaacgttaaaactcttaggaagag 40212039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 2371127 - 2371224
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 420  Q
    |||||||||  |||||||||||||  |||| |||||||||| || || |||||||||  ||||||| ||| ||| || ||||||||| ||||||||||    
T  2371127 acccaagagtgcttagatgagatgacacggttctcttctagattgactaaggtcctgaattcgaattcaggcttaggaatgcagcagcgttaaaactc 2371224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 452
Target Start/End: Original strand, 24512617 - 24512734
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    |||||||| |||  ||||||||||||||| |||||||| ||||||  ||||||| || |||||| ||| || ||  |||||||||||| |||||||  ||    
T  24512617 ttagatgaaatgacacgggtctcttctagtttaaccaatgtcctgaattcgaatacaaccttggacatccaacaacgttaaaactcttggggagagtgtg 24512716  T
Q  435 ccacccatttgggtccca 452  Q
     |  ||||||||||||||    
T  24512717 acgtccatttgggtccca 24512734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 24579584 - 24579507
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    ||||||||||| ||||||||||| ||| |||||||| |||| ||  |||||||||| || |||||| |||||||||||    
T  24579584 gtctcttctagtttaaccaaggttctgagttcgaattcagctttacgcatgcagcattgataaaacacttagggagag 24579507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 422
Target Start/End: Original strand, 5905812 - 5905900
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||||| ||||| |||||||||| ||||||||| ||| | || | |||||||   |||||||||||||||  |||||||||||    
T  5905812 cttagatgagatagaacgagtctcttctaacttaaccaacgtcttaggcttgaatccaatattgggcatgcagcagcattaaaactctt 5905900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 2871104 - 2871038
Alignment:
Q  356 tcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||| |||||||||||| ||||||| ||||||| |||| | |||||| || |||||||||||||    
T  2871104 tcttctaacttaaccaaggttctgggtttgaatccatccttagacatgcaacaatgttaaaactctt 2871038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 12142637 - 12142707
Alignment:
Q  355 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    |||||||| ||||||||| ||||| ||||||||| | | | |||||||||||||  |||||||||||||||    
T  12142637 ctcttctaacttaaccaaagtccttggttcgaattcggtcatgggcatgcagcatcgttaaaactcttagg 12142707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 4059824 - 4059748
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    ||||||| ||| |||||||||||| || |||||||| |||||||| ||||||| ||  |||||||||||||| |||||    
T  4059824 gtctcttttagtttaaccaaggtc-tgagttcgaatacagccttgagcatgcaacatcgttaaaactcttagagagag 4059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 473
Target Start/End: Complemental strand, 23933772 - 23933663
Alignment:
Q  364 cttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccag 463  Q
    |||||| |||||||||||||||||||||| |||| || ||||  ||  |||||||| ||||||||||  |||| ||||||| ||| | ||||| |   ||    
T  23933772 cttaactaaggtcctgggttcgaatccagtcttgagcttgcaagagcattaaaacttttagggagagtttgccgcccatttaggttcgacaatacttgag 23933673  T
Q  464 ggattagtct 473  Q
    ||||||||||    
T  23933672 ggattagtct 23933663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 32469921 - 32469981
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcct 395  Q
    ||||||||||||||||| |||||||||||||||| |||| |  || ||||||||| |||||    
T  32469921 ttagatgagatggaacgagtctcttctagcttaatcaagattttgagttcgaatcaagcct 32469981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 37339803 - 37339745
Alignment:
Q  415 aaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||| ||||| ||||| || |||||||||||| ||||| | ||||||||||||    
T  37339803 aaactcttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtct 37339745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 37900503 - 37900434
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||| ||| |||||||| ||| ||||||| |||| | |||| | ||||||||| |||||||||||||    
T  37900503 gtctcttttagtttaaccaaagtcatgggttcaaatcaaaccttagacatgcagcaatgttaaaactctt 37900434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 37907014 - 37906945
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||| ||| |||||||| ||| ||||||| |||| | |||| | ||||||||| |||||||||||||    
T  37907014 gtctcttttagtttaaccaaagtcatgggttcaaatcaaaccttagacatgcagcaatgttaaaactctt 37906945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 18038150 - 18038078
Alignment:
Q  358 ttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    ||||| ||||||||| ||| || ||||||||| | | || |||||||||||| ||||| ||||||||| ||||    
T  18038150 ttctaacttaaccaatgtcttgtgttcgaatctaactttaggcatgcagcagcgttaagactcttaggcagag 18038078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 321 - 473
Target Start/End: Complemental strand, 4125188 - 4125036
Alignment:
Q  321 taacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||    
T  4125188 taacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaatgtcctgggttcgaatcaagccttgggcatgcagcactgttaaaactc 4125089  T
Q  421 ttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  4125088 ttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtct 4125036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 2743912 - 2744062
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2743912 acccaagagcatttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 2744011  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| || |  |||||||||||||||||||| | ||||||||||||    
T  2744012 agggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtct 2744062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 30935983 - 30936133
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||  ||||||||||||    
T  30935983 acccaagagcacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactctt 30936082  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||| ||||||||||||| ||||||  | ||||||||||||    
T  30936083 agggagagcctgccgcccatttgggtccgacaatgttcgagggattagtct 30936133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 12958247 - 12958097
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||  |||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||    
T  12958247 acccaagagtgcttagatgagatggaactagtctcttctagcttaaccaaggtcatgggtttgaatccagcattgggcatgcagcagcgttaaaactctt 12958148  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||| | ||||||||||||||||||||| | ||||||||||||    
T  12958147 agggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtct 12958097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 335 - 473
Target Start/End: Complemental strand, 13468895 - 13468757
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||    
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgtagcagcgttaaaactcttagagagagtctg 13468796  T
Q  435 ccacccatttgggtcccacaatgccccagggattagtct 473  Q
    || |||||||| |||||||||||| | | ||||||||||    
T  13468795 ccgcccatttgagtcccacaatgctcgaaggattagtct 13468757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 329 - 458
Target Start/End: Complemental strand, 19715882 - 19715753
Alignment:
Q  329 gagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggag 428  Q
    |||| |||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  19715882 gagcgcttagatgagatggaacatgtcttttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactctcagggag 19715783  T
Q  429 agcctgccacccatttgggtcccacaatgc 458  Q
    ||| |||| |||||||||||||||||||||    
T  19715782 agcttgccgcccatttgggtcccacaatgc 19715753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 343 - 469
Target Start/End: Original strand, 15682928 - 15683054
Alignment:
Q  343 gatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccat 442  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  15682928 gatggaacgagtctcttctagcttaatcaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccat 15683027  T
Q  443 ttgggtcccacaatgccccagggatta 469  Q
    || ||||||||||||| | ||||||||    
T  15683028 ttaggtcccacaatgctcgagggatta 15683054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 335 - 473
Target Start/End: Complemental strand, 30056151 - 30056013
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    ||||||||||||||||  ||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  30056151 ttagatgagatggaacatgtctcttctagcttaacgaaggtcatgggttcaaatccagccttaggcatgcagcagcattaaaactcttagggagagcctg 30056052  T
Q  435 ccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||  |||||||||| ||||||||| | ||||||||||||    
T  30056051 ccgtccatttgggttccacaatgctcgagggattagtct 30056013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 36994662 - 36994512
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| ||||||| |||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  36994662 acccaagagcgcttagataagatggcacatgtctcttctagtttaaccaaggtcctgggttcgaatccagccttggacatgcagcagcgttaaaactctt 36994563  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    | ||||||  |||  |||||||||||||||||| || | ||||||||||||    
T  36994562 aaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtct 36994512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 334 - 458
Target Start/End: Original strand, 35206990 - 35207114
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcct 433  Q
    ||||||||||||| ||| ||||||||||| |||||||||| | ||||||||||||  | |||||| |||||||||| ||||||||||||| ||| ||| |    
T  35206990 cttagatgagatgaaacaggtctcttctaacttaaccaagattctgggttcgaatttaaccttggacatgcagcagcgttaaaactcttaaggaaagcat 35207089  T
Q  434 gccacccatttgggtcccacaatgc 458  Q
    | |  ||||||||||||||||||||    
T  35207090 gtcgtccatttgggtcccacaatgc 35207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 473
Target Start/End: Complemental strand, 7839343 - 7839265
Alignment:
Q  395 ttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||  |||||||||||||||||||| |||| ||||||||||||||||||||| | ||||||||||||    
T  7839343 ttgggcatgcagcagctttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtct 7839265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 431
Target Start/End: Complemental strand, 27121899 - 27121804
Alignment:
Q  336 tagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagc 431  Q
    ||||||||||   |||||||||||||||||||||||| || ||||||||||||||||| ||  ||||||| ||||||||||||| ||||| |||||    
T  27121899 tagatgagataacacgggtctcttctagcttaaccaaagttctgggttcgaatccagctttaagcatgcaacagtgttaaaacttttaggaagagc 27121804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 39086797 - 39086853
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctg 379  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  39086797 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcctg 39086853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 44705653 - 44705725
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttg 397  Q
    ||||||||  ||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  44705653 ccaagagcgtttagatgggatggaacaggtctcttctagtttaaccaaggtcttgggttcgaatccagccttg 44705725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 455
Target Start/End: Complemental strand, 16701513 - 16701409
Alignment:
Q  351 gggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcc 450  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||||| ||| ||| ||  ||||| |||||||||||||  ||   |||||||| ||||    
T  16701513 gggtctcttctatcttaactaaggttctgggttcgaatccagccttggacatacagtagctttaaacctcttagggagagtttgtagcccatttgagtcc 16701414  T
Q  451 cacaa 455  Q
    |||||    
T  16701413 cacaa 16701409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 456
Target Start/End: Original strand, 44638992 - 44639095
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtccca 452  Q
    |||||||||| ||||| ||||||||||  || ||||||| ||||| ||||||| ||  ||||||||||||||||||||  |||| | |||||| | ||||    
T  44638992 gtctcttctaacttaatcaaggtcctgaatttgaatccaaccttgagcatgcaacaacgttaaaactcttagggagagtttgccgcacatttgagcccca 44639091  T
Q  453 caat 456  Q
    ||||    
T  44639092 caat 44639095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 449
Target Start/End: Complemental strand, 23981632 - 23981507
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    ||||||| ||||||| |||||  ||| ||||||| ||||||||| | ||| |||| ||||||| |||| |||| ||||||| |  ||||||||||||||     
T  23981632 caagagcgcttagatcagatgacacgagtctcttttagcttaactagggttctggattcgaattcagctttggacatgcaggaacgttaaaactcttaga 23981533  T
Q  426 g--agagcctgccacccatttgggtc 449  Q
    |  ||||  |||||||||||||||||    
T  23981532 gaaagagtttgccacccatttgggtc 23981507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 473
Target Start/End: Original strand, 24988530 - 24988628
Alignment:
Q  380 ggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggag-----agcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||||     ||| |||| | |||||| |||||||||| | | ||||||||||||    
T  24988530 ggtttgaatccagccttgggcatgcagcagtgctaaaactcttggggaggggatagcttgccgctcatttgagtcccacaatactcgagggattagtct 24988628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 430
Target Start/End: Original strand, 28377629 - 28377744
Alignment:
Q  315 attatttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgtta 414  Q
    ||||||| | |||||||| |||| |||||||   ||| || |||| |||||||| ||| ||| || ||||||||||||| || |||||||||||   |||    
T  28377629 attatttgatccaagagcgcttacatgagataacacgagtttcttttagcttaatcaaagtcatgagttcgaatccagcattaggcatgcagcaacatta 28377728  T
Q  415 aaactcttagggagag 430  Q
    ||| ||||||||||||    
T  28377729 aaattcttagggagag 28377744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 32422923 - 32422808
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggca-tgcagcagtgttaaaactcttagggagagcct 433  Q
    ||||||||||||  ||  |||||||| | |||||||||| ||||||  |||||| ||  |||||||| |||||||||||||||||| || ||||||   |    
T  32422923 ttagatgagatgacacaagtctcttcaaccttaaccaagatcctggaatcgaattcaatcttgggcaatgcagcagtgttaaaactttttgggagaaatt 32422824  T
Q  434 gccacccatttgggtc 449  Q
    ||| ||||||||||||    
T  32422823 gccgcccatttgggtc 32422808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 444
Target Start/End: Original strand, 10030944 - 10031058
Alignment:
Q  330 agcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggaga 429  Q
    |||| |||||| ||||| |||| || ||||||| |||||||||  | ||| |||||||||  || |||| ||| || ||  |||||||||||||||||||    
T  10030944 agcatttagataagatgaaacgagtttcttctaacttaaccaaaattctgagttcgaatcttgcattggacatccaacaacgttaaaactcttagggaga 10031043  T
Q  430 gcctgccacccattt 444  Q
    || |||| |||||||    
T  10031044 gcttgccgcccattt 10031058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 13005831 - 13005753
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggca 401  Q
    |||||||||| ||||| |||||||  ||  ||||||||||||||| |||||||| ||||||  ||||||||||| ||||    
T  13005831 acccaagagcgcttagctgagatgtcacatgtctcttctagcttatccaaggtcttgggtttaaatccagccttcggca 13005753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 473
Target Start/End: Original strand, 21032302 - 21032425
Alignment:
Q  349 acgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggt 448  Q
    ||||||||||| || |||||||||  || | ||||| ||||||||||| ||||||||| || ||| ||||| ||||||||||  |||| |  ||||| ||    
T  21032302 acgggtctcttgtaacttaaccaatatcataggttcaaatccagcctttggcatgcag-agcgtttaaactattagggagagtttgccgcttatttgagt 21032400  T
Q  449 cccacaatgccccagggattagtct 473  Q
     | ||||||| | ||||||||||||    
T  21032401 actacaatgctcgagggattagtct 21032425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 4321633 - 4321558
Alignment:
Q  356 tcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagc 431  Q
    |||||||||||||  ||||| ||||||| |||||||| ||| | ||||||  |  |||||||||||||||||||||    
T  4321633 tcttctagcttaagtaaggttctgggtttgaatccagtcttagacatgcaataacgttaaaactcttagggagagc 4321558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 8034203 - 8034158
Alignment:
Q  411 gttaaaactcttagggagagcctgccacccatttgggtcccacaat 456  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||    
T  8034203 gttaaaactcttagggagagcttgcagtccatttgggtcccacaat 8034158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 8878210 - 8878150
Alignment:
Q  370 caaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    |||||||  ||||||||||||||| || |||||||| ||  ||||||||||||||| ||||    
T  8878210 caaggtctcgggttcgaatccagctttaggcatgcaacaacgttaaaactcttaggaagag 8878150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 33404444 - 33404376
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatcca 391  Q
    |||||||||| |||||||||||||  ||  ||||||| ||||| |||||| ||| |||||| |||||||    
T  33404444 acccaagagcgcttagatgagatgacacaagtctcttatagctcaaccaaagtcatgggtttgaatcca 33404376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 322 - 473
Target Start/End: Original strand, 10591905 - 10592056
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591905 aacccaagagcacttagatgagatggaacgggtctcttctagattaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 10592004  T
Q  422 tagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| ||||| |||||||| |||||||||||| | ||||||||||||    
T  10592005 tagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtct 10592056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 30785148 - 30784998
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||| |||| |||||||||  ||||||||||||    
T  30785148 acccaagagcatttagatgagatggaacgagtctcttctagcttaatcaatgtcttgggttcgaatccagctttggacatgcagcaacgttaaaactctt 30785049  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||  |||||| |||||| |||| |||||||  | ||||||||||||    
T  30785048 agggagaatctgccatccatttaggtctcacaatgttcaagggattagtct 30784998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 335 - 473
Target Start/End: Original strand, 31113325 - 31113463
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    |||||||||||| ||||||||| || ||||||||  ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  31113325 ttagatgagatgaaacgggtcttttttagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 31113424  T
Q  435 ccacccatttgggtcccacaatgccccagggattagtct 473  Q
    || ||||||||| ||||||||| | | ||||||||||||    
T  31113425 ccgcccatttggatcccacaatactcgagggattagtct 31113463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 326 - 473
Target Start/End: Complemental strand, 18909457 - 18909313
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    ||||||| |||||||||||| ||||||||   ||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  18909457 caagagcgcttagatgagatagaacgggt---ttctagcttaatcaaggtcctaggttcgaatccagccttgggtatgcagcagtgttaaaactcttagg 18909361  T
Q  426 gagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||   |||| | ||||||  ||||||||||| | ||||||||||||    
T  18909360 gagaatttgccgctcatttgaatcccacaatgctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 323 - 434
Target Start/End: Complemental strand, 28023605 - 28023494
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||  || |||||||||||| ||    
T  28023605 acccaagagcgcttagatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagccttaggcatatagtagtgttaaaactttt 28023506  T
Q  423 agggagagcctg 434  Q
    ||||||||||||    
T  28023505 agggagagcctg 28023494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 2798477 - 2798354
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    |||||||||||| |||||||||||| ||||| | |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||| |    
T  2798477 aacccaagagcagttagatgagatgaaacggtt-tcttctagcttaaccaaggttctgggttcgaatccaaccttgagcatgcagcagcgttaaaacttt 2798379  T
Q  422 tagggagagcctgccacccatttgg 446  Q
    |||||||||| | || |||||||||    
T  2798378 tagggagagcttaccgcccatttgg 2798354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 5123598 - 5123510
Alignment:
Q  385 gaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  5123598 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtct 5123510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 2804644 - 2804521
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    |||||||||||| |||||||||||| ||||| | ||||||||||||||||||||  |||||||||||||| ||||| ||||||||||| ||||||||| |    
T  2804644 aacccaagagcagttagatgagatgaaacggtt-tcttctagcttaaccaaggttttgggttcgaatccaaccttgagcatgcagcagcgttaaaacttt 2804546  T
Q  422 tagggagagcctgccacccatttgg 446  Q
    |||||||||| | || |||||||||    
T  2804545 tagggagagcttaccgcccatttgg 2804521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 334 - 473
Target Start/End: Complemental strand, 22188147 - 22188010
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcct 433  Q
    |||||||||||| |||||  ||||||||| ||||||||||||  |||||| |||||||||||||||||| || ||| ||||||||||||  |||||| ||    
T  22188147 cttagatgagattgaacgaatctcttctaacttaaccaaggtattgggtttgaatccagccttgggcatacaacagcgttaaaactctt--ggagagtct 22188050  T
Q  434 gccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||| || |||||||||||||||| |   ||||||||||||    
T  22188049 gccgcctatttgggtcccacaatactagagggattagtct 22188010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 10795478 - 10795348
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||| | |||||||||||||  |||| |||||||  ||||||||||||||||  |||| ||||||||||| |||||| |||||  ||||||||||     
T  10795478 acccaagaacgcttagatgagatgatacggatctcttc--gcttaaccaaggtcctaagttcaaatccagccttaggcatgaagcagcattaaaactcta 10795381  T
Q  423 agggagagcctgccacccatttgggtcccacaa 455  Q
    | |||||   |||| ||||||||||||||||||    
T  10795380 aaggagaatgtgccgcccatttgggtcccacaa 10795348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 12682630 - 12682720
Alignment:
Q  339 atgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggaga 429  Q
    |||||||| |||| |||||||||||||||| ||| || ||| ||||||||||||||||| ||||||| ||  |||||||||||| ||||||    
T  12682630 atgagatgaaacgagtctcttctagcttaagcaatgttctgagttcgaatccagccttgagcatgcaacaacgttaaaactcttcgggaga 12682720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 473
Target Start/End: Original strand, 36212962 - 36213025
Alignment:
Q  410 tgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||||||||  |||| ||||||| ||||||||||||| | ||||||| ||||    
T  36212962 tgttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtct 36213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 12336148 - 12336090
Alignment:
Q  365 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctta 423  Q
    |||||||||||||||| || |||| || | |||||||||||| ||||||||||||||||    
T  12336148 ttaaccaaggtcctggatttgaattcaacattgggcatgcagtagtgttaaaactctta 12336090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 456
Target Start/End: Original strand, 35774603 - 35774697
Alignment:
Q  362 agcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaat 456  Q
    |||||||| || ||| || ||||||||  |||||||| |||||| || ||||||||| |||||||||||| |||| | |||||| ||| ||||||    
T  35774603 agcttaactaaagtcttgagttcgaatttagccttggacatgcaacaatgttaaaacacttagggagagcttgccgcacatttgagtctcacaat 35774697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 12487398 - 12487303
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtc 449  Q
    |||||||||||||||||||| ||| ||  ||| ||| ||||||| | |||||| ||  || |||||| ||||||||||| |||| ||||||||||||    
T  12487398 gtctcttctagcttaaccaatgtcttgccttcaaattcagccttag-catgcaacatcgtcaaaacttttagggagagcttgccgcccatttgggtc 12487303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 423
Target Start/End: Original strand, 23422731 - 23422801
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctta 423  Q
    |||| ||||||||||||||||||| || | || |||| ||  ||||||||||||||  |||||||||||||    
T  23422731 gtcttttctagcttaaccaaggtcttgagatcaaatctagttttgggcatgcagcaaagttaaaactctta 23422801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 430
Target Start/End: Complemental strand, 3526004 - 3525909
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    |||||||||||||  ||  ||||||||||| ||||||||| | || | ||||||||||  ||| | |||||| || |||||||||| ||||||||||    
T  3526004 cttagatgagatgacacatgtctcttctagtttaaccaagattctag-ttcgaatccactcttagacatgcaacattgttaaaacttttagggagag 3525909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 10676517 - 10676561
Alignment:
Q  333 acttagatgagatggaacgggtctcttctagcttaaccaaggtcc 377  Q
    |||||||||||||||||||||| |||||||  | |||||||||||    
T  10676517 acttagatgagatggaacgggtttcttctaattaaaccaaggtcc 10676561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 327 - 473
Target Start/End: Original strand, 5394380 - 5394525
Alignment:
Q  327 aagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttaggg 426  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5394380 aagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagca-tgttaaaactcttaggg 5394478  T
Q  427 agagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||| ||||||||||||||||||||| |  |||||||||||    
T  5394479 agagcctgccgcccatttgggtcccacaatgctcgtgggattagtct 5394525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 44732735 - 44732616
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44732735 acccaagagcacttagatgagatggaacgggtctcttatagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 44732636  T
Q  423 agggagagcctgccacccat 442  Q
    |||||||||||||| |||||    
T  44732635 agggagagcctgccgcccat 44732616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 42745278 - 42745128
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  42745278 acccaagagcgcttagatgagatggaacgggtctcttatagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaatgttaaaactctt 42745179  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||| ||||  || |||||||| ||||||||  | ||||||||||||    
T  42745178 agggagagtctgctgcctatttgggttccacaatggtcgagggattagtct 42745128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 323 - 471
Target Start/End: Complemental strand, 31579391 - 31579243
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||    
T  31579391 acccaagagcacttagatgagatgtaacgggtctcttctagcttaatcaaggtcttgggttcgaatccagccttgggcatgcaacagtgttaaaactttt 31579292  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagt 471  Q
    |||||||| ||||| |||||||  |||||||||||| | ||| ||||||    
T  31579291 agggagagtctgccgcccatttaagtcccacaatgctcgaggaattagt 31579243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 37568893 - 37568785
Alignment:
Q  319 tttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaac 418  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37568893 tttaacccaagagcacttagatgagatggaacgggtttcttctagcttaaccaaggtcctgggttcgaatccagccttaggcatgcagcagtgttaaaac 37568794  T
Q  419 tcttaggga 427  Q
    |||||||||    
T  37568793 tcttaggga 37568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 323 - 456
Target Start/End: Complemental strand, 12133392 - 12133259
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||  ||||||||||||    
T  12133392 acccaagagcgcttagatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatccagccttggacatgcagcaacgttaaaactctt 12133293  T
Q  423 agggagagcctgccacccatttgggtcccacaat 456  Q
    ||||||||||||||  |||||||||||| |||||    
T  12133292 agggagagcctgccgtccatttgggtcctacaat 12133259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 322 - 473
Target Start/End: Complemental strand, 18105525 - 18105374
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    |||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||    
T  18105525 aacctaagagcgcttatatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcaacaacgttaaaattct 18105426  T
Q  422 tagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    || |||||||||||| |||||||| ||| |||||| | | ||||||||||||    
T  18105425 tatggagagcctgccgcccatttgagtctcacaatactcgagggattagtct 18105374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 323 - 471
Target Start/End: Complemental strand, 9438298 - 9438150
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||  |||||||||||||||||  |||||| |||||||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||||    
T  9438298 acccaagagcgtttagatgagatggaacgaatctcttttagcttaaccaaagtctttggttcgaatccagccttgggcatgcagcagggttaaaactctt 9438199  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagt 471  Q
    ||| ||| |||||| |||||||| ||||||||||||   ||||||||||    
T  9438198 aggaagaacctgccgcccatttgtgtcccacaatgcttgagggattagt 9438150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 326 - 456
Target Start/End: Original strand, 993736 - 993865
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    ||||||| |||||||||||||  ||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||||||    
T  993736 caagagcgcttagatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaattcaaccttgggcatgcagcagcg-taaaactcttagg 993834  T
Q  426 gagagcctgccacccatttgggtcccacaat 456  Q
    |||| | |||| ||||||||||||| |||||    
T  993835 gagaacttgccgcccatttgggtcctacaat 993865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 325 - 447
Target Start/End: Original strand, 7157479 - 7157601
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||| ||| |||||||| ||| ||||| |||||||||| |||||||||| |||| |||||||||| ||||||||||||||||||  ||||||||||||||    
T  7157479 ccaatagcgcttagatgggatagaacgagtctcttctaacttaaccaagatcctaggttcgaatctagccttgggcatgcagcaacgttaaaactcttag 7157578  T
Q  425 ggagagcctgccacccatttggg 447  Q
    |||||||||||| || |||||||    
T  7157579 ggagagcctgccgcctatttggg 7157601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 19956008 - 19955916
Alignment:
Q  233 ctgtaatttaaccagttttatttatttttccctaagcaaacaatttatttatggaagtacaaggagacgtattcacaaagagattatttaacc 325  Q
    |||||||||||||| |||||||||||||||| || |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19956008 ctgtaatttaaccatttttatttatttttccataggcaaaggatttatttatggaagtacaaggagacgtattcccaaagagattatttaacc 19955916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 17981477 - 17981626
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||||| ||||||  ||  ||||||| |||||||||||| ||   |||||||||||    
T  17981477 acccaatagcgcttagatgagatggaacgagtctcttctagcttaaccaaagtcctgaatttaaatccagtcttgggcatgcaacaacattaaaactctt 17981576  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| ||||  | |||||||||||||||||| | || |||||||||    
T  17981577 agggagagcttgcc-gcaatttgggtcccacaatgctcgagagattagtct 17981626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 28365927 - 28366014
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 409  Q
    ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||    
T  28365927 aacccaagagcgcttagatgagatggaacgcgtctcttctaacttaaccaaggtcgtgagttcgaatgcagccttgggcatgcagcag 28366014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 44752356 - 44752206
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||| || |||||||||||||  ||  ||||||||||||||||||||  |||| |||||||||| || |||||||||||| ||  ||||||||||||    
T  44752356 acccaagtgcgcttagatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatcaagtcttgggcatgcaacaacgttaaaactctt 44752257  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
     |||||||| ||||||| |||||||| | ||||| | | ||||||||||||    
T  44752256 tgggagagcttgccaccaatttgggttctacaatactcgagggattagtct 44752206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 473
Target Start/End: Complemental strand, 7020518 - 7020372
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    ||||||||  ||||||||||| | |||||||||||||||||||||||||||| ||  ||||||| ||   || ||||||||||| |||||||| ||||||    
T  7020518 ccaagagcgtttagatgagattgcacgggtctcttctagcttaaccaaggtcttgaattcgaattca-atttaggcatgcagcaatgttaaaa-tcttag 7020421  T
Q  425 ggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||| | |||| ||||||||||||| ||||||| | || |||||||||    
T  7020420 ggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtct 7020372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 455
Target Start/End: Original strand, 17627543 - 17627670
Alignment:
Q  328 agagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttaggga 427  Q
    ||||| |||||| ||||||  ||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||| ||  ||||||| |||||||||    
T  17627543 agagcgcttagacgagatgacacgcgtctcttctaatttaaccaaggtcctgagttcgaatccagccttgggcatgcaacaacgttaaaattcttaggga 17627642  T
Q  428 gagcctgccacccatttgggtcccacaa 455  Q
     ||  |||  |||||||| |||||||||    
T  17627643 aagtttgctgcccatttgagtcccacaa 17627670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 454
Target Start/End: Original strand, 17672608 - 17672741
Alignment:
Q  321 taacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 420  Q
    |||||| ||||| |||||| ||||||  ||| |||||||| |  ||||||||||||||| ||||||||||| ||||||||||||| ||  ||||||| ||    
T  17672608 taaccctagagcgcttagacgagatgacacgcgtctcttcaaatttaaccaaggtcctgagttcgaatccaaccttgggcatgcaacaacgttaaaattc 17672707  T
Q  421 ttagggagagcctgccacccatttgggtcccaca 454  Q
    ||||||||||  |||  |||||||| ||||||||    
T  17672708 ttagggagagtttgctgcccatttgagtcccaca 17672741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 33756956 - 33757064
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||| |||||||||||||||  |||||||||||||||||||| |||||| ||  |||||||| |||||||| |||| ||  || ||||||||||||    
T  33756956 acccaagaacacttagatgagatgacacgggtctcttctagcttaatcaaggttcttagttcgaattcagccttgagcatacaatagcgttaaaactctt 33757055  T
Q  423 agggagagc 431  Q
    ||| |||||    
T  33757056 aggaagagc 33757064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 473
Target Start/End: Complemental strand, 38373124 - 38373006
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtccca 452  Q
    ||||||| ||||||||||||   |||||||||||||||| ||||  ||||||||||| | ||||||||||||| ||||| |||| ||||  |||||||||    
T  38373124 gtctcttatagcttaaccaaatccctgggttcgaatccaaccttatgcatgcagcagcggtaaaactcttaggaagagcttgccgccca--tgggtccca 38373027  T
Q  453 caatgccccagggattagtct 473  Q
    |||||| | ||| ||||||||    
T  38373026 caatgctcaaggaattagtct 38373006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 473
Target Start/End: Complemental strand, 14122009 - 14121894
Alignment:
Q  358 ttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatg 457  Q
    ||||||| |||||| ||||||| ||| |||| ||| ||||  |||||||||  ||||||| |||||| |||| | |||| |||||||| |||||||||||    
T  14122009 ttctagcctaaccagggtcctgagtttgaattcagtcttgaacatgcagcaacgttaaaattcttagagagaacttgccgcccatttgagtcccacaatg 14121910  T
Q  458 ccccagggattagtct 473  Q
    | | ||||||||||||    
T  14121909 ctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 455
Target Start/End: Original strand, 17658471 - 17658573
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtccca 452  Q
    ||||||||||  ||||||||| |||||  |||||||| ||||||||||||||| ||  ||||||| ||||||||||||  |||  |||||||| ||||||    
T  17658471 gtctcttctaatttaaccaagatcctgaattcgaatctagccttgggcatgcaacaacgttaaaattcttagggagagtttgctgcccatttgagtccca 17658570  T
Q  453 caa 455  Q
    |||    
T  17658571 caa 17658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 458
Target Start/End: Complemental strand, 39401219 - 39401096
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    ||||||||||||  ||| |||| || || |||||||||| || ||| ||||||| ||||||||||||||||| |   |||||||| |||||||||||  |    
T  39401219 ttagatgagatgacacgagtcttttttaacttaaccaagatcttggattcgaattcagccttgggcatgcagtatcattaaaacttttagggagagctcg 39401120  T
Q  435 ccacccatttgggtcccacaatgc 458  Q
     |  |||||| |||||||||||||    
T  39401119 tcgtccatttaggtcccacaatgc 39401096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 430
Target Start/End: Original strand, 24359543 - 24359650
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    ||||||||||| ||||||||| ||| ||  | ||||||||| ||||| ||||||||| |||| |||||||||||||   ||||||||   |||||||| |    
T  24359543 aacccaagagcgcttagatgatatgaaatag-tctcttctaacttaatcaaggtcctaggtttgaatccagccttgataatgcagcaacattaaaacttt 24359641  T
Q  422 tagggagag 430  Q
    |||||||||    
T  24359642 tagggagag 24359650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 25423821 - 25423873
Alignment:
Q  421 ttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| |||||| ||||||||||||||||||||| | ||||||||||||    
T  25423821 ttagggagaacctgccgcccatttgggtcccacaatgctcgagggattagtct 25423873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 473
Target Start/End: Complemental strand, 37180108 - 37180013
Alignment:
Q  373 ggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtc 472  Q
    |||| ||||||||||||||| ||||| |||||| ||||||     |||||||||||||  |||| |||||||| |||||||||| | | |||||||||||    
T  37180108 ggtcttgggttcgaatccagtcttggacatgcaacagtgt-----ctcttagggagagtgtgccgcccatttgagtcccacaatactcgagggattagtc 37180014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 473
Target Start/End: Original strand, 38743767 - 38743867
Alignment:
Q  373 ggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtc 472  Q
    ||||||| ||| ||||| || |||||||||||||||  ||||||||| || |||||||| |||| | ||||||| || ||||||||   |||||||||||    
T  38743767 ggtcctgagtttgaatctagtcttgggcatgcagcaacgttaaaacttttggggagagcttgccgctcatttggatctcacaatgctttagggattagtc 38743866  T
Q  473 t 473  Q
    |    
T  38743867 t 38743867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 422
Target Start/End: Original strand, 44814812 - 44814914
Alignment:
Q  322 aacccaagagcacttagatgagatgg-aacgggtctcttctagcttaacca-aggtcctgggttcgaatcc-agccttgggcatgcagcagtgttaaaac 418  Q
    ||||||||||||||| |||||||||| || || ||||||| |||||||||| |||||| ||||| |||||| ||||||||| ||||| || ||||||| |    
T  44814812 aacccaagagcacttggatgagatggtaagggatctcttccagcttaaccagaggtcccgggtttgaatccaagccttggg-atgcaacattgttaaatc 44814910  T
Q  419 tctt 422  Q
    ||||    
T  44814911 tctt 44814914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 423
Target Start/End: Complemental strand, 3772703 - 3772605
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctta 423  Q
    |||||||| |||||||||||||  ||  ||||||||||  ||||||||||||||  |||||||||||  ||||  |||||| || ||||||| ||||||    
T  3772703 ccaagagcgcttagatgagatgacacaagtctcttctaatttaaccaaggtcctaagttcgaatccaatcttgaacatgcaacaatgttaaacctctta 3772605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 19956143 - 19956085
Alignment:
Q  90 aggtaaatcgaaaattgcatatattgttggaggtaaacatatattaaattttgttttag 148  Q
    ||||||||| ||| | || ||||||||||||| ||||||||||||||| ||||||||||    
T  19956143 aggtaaatcaaaattcgcctatattgttggagctaaacatatattaaactttgttttag 19956085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 421
Target Start/End: Complemental strand, 42905774 - 42905689
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    ||||||||||||   ||| |||||| ||||||||| |||||||| | ||||||||||  ||| | ||||||||||||||||||||||    
T  42905774 ttagatgagatgacgcggatctcttttagcttaactaaggtcctag-ttcgaatccaaactttgtcatgcagcagtgttaaaactct 42905689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 456
Target Start/End: Complemental strand, 24413071 - 24412956
Alignment:
Q  340 tgagatggaacgggtctcttctagcttaa-ccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccac 438  Q
    |||||||| ||| ||||||||||| |||| | |||||| || ||||||||| | |||| | |||||||||  |||||||||| || ||||||| ||||||    
T  24413071 tgagatggtacgagtctcttctagtttaagcaaaggtcttgagttcgaatctaacctt-gacatgcagcaacgttaaaactc-taaggagagcttgccac 24412974  T
Q  439 ccatttgggtcccacaat 456  Q
    | ||||| ||||||||||    
T  24412973 ctatttgagtcccacaat 24412956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 38463964 - 38464033
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||| ||||| ||||||||| || || | |||||||||||||||||||||||| ||  ||||||||||||    
T  38463964 gtcttttctaacttaaccaaagttctagattcgaatccagccttgggcatgcaacaccgttaaaactctt 38464033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 19252654 - 19252590
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaa 387  Q
    ||||||||||  ||||||||||||  ||||||||||| ||||||||||||  ||||| |||||||    
T  19252654 acccaagagcgtttagatgagatgatacgggtctcttttagcttaaccaaactcctgagttcgaa 19252590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 40688888 - 40688817
Alignment:
Q  327 aagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttggg 399  Q
    |||||| ||||| ||||||||||  ||||||||||| ||||||||| |||||| | |||||| ||||||||||    
T  40688888 aagagcgcttaggtgagatggaattggtctcttctaacttaaccaaagtcctgag-tcgaattcagccttggg 40688817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 13987041 - 13986967
Alignment:
Q  381 gttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaa 455  Q
    ||||||||||| ||||| |||||||| ||||| |||||| ||||||||||  |||| |  ||||| |||||||||    
T  13987041 gttcgaatccaaccttgagcatgcagtagtgtaaaaacttttagggagagtttgccgcttatttgagtcccacaa 13986967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 13992939 - 13992865
Alignment:
Q  381 gttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaa 455  Q
    ||||||||||| ||||| |||||||| ||||| |||||| ||||||||||  |||| |  ||||| |||||||||    
T  13992939 gttcgaatccaaccttgagcatgcagtagtgtaaaaacttttagggagagtttgccgcttatttgagtcccacaa 13992865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 14757738 - 14757680
Alignment:
Q  350 cgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagca 408  Q
    ||||||||||||| ||||||||||||||| | || |||| || ||||| ||||||||||    
T  14757738 cgggtctcttctaccttaaccaaggtcctagatttgaattcaaccttgtgcatgcagca 14757680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 19956190 - 19956153
Alignment:
Q  17 gacatcagggttcaaaaccaaagaatgttcatattata 54  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  19956190 gacatcagggtccaaaaccaaataatgttcatattata 19956153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 2562459 - 2562375
Alignment:
Q  371 aaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaa 455  Q
    |||||| ||||||||||| |||| ||  ||||||||||| |||| |||||||| | ||||  || | | ||||||||||||||||    
T  2562459 aaggtcttgggttcgaatacagctttctgcatgcagcagcgttacaactcttatgaagagtttggcgctcatttgggtcccacaa 2562375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 25988641 - 25988685
Alignment:
Q  365 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 409  Q
    ||||||||| | |||||||||||| ||||||||||||| ||||||    
T  25988641 ttaaccaagattctgggttcgaattcagccttgggcatacagcag 25988685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 45414075 - 45414039
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttcta 362  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  45414075 caagagcacttagatgagatgaaacgagtctcttcta 45414039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 345 - 457
Target Start/End: Original strand, 26332 - 26444
Alignment:
Q  345 tggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccattt 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26332 tggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccattt 26431  T
Q  445 gggtcccacaatg 457  Q
    |||||||||||||    
T  26432 gggtcccacaatg 26444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 322 - 473
Target Start/End: Complemental strand, 30996128 - 30995977
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||| ||| |||||||||||    
T  30996128 aacccaagagcgcttagatgagatggaacgggtctcttctatcttaaccaaggtcctgggttcgaatccgaccttgggcatgcaacagcgttaaaactct 30996029  T
Q  422 tagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| ||||| ||||| ||||||||||||||| | ||||||||||||    
T  30996028 tagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtct 30995977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 27763702 - 27763850
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  27763702 acccaagagcgcttagatgagatagaacgggtctc--ctagcttaaccaaggtcctgggttcgaatccagccttgggcatacaacagtgttaaaactctt 27763799  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||| |||||  ||||||| |||||||||||| | ||||||||||||    
T  27763800 agggagagtctgccgtccatttgagtcccacaatgctcgagggattagtct 27763850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 25224678 - 25224828
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||||||||| ||||||||||||    
T  25224678 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatcaagttttgggaatgcagcagcgttaaaactctt 25224777  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    | ||||| | |||| ||||||| ||||||||||||| | ||||||||||||    
T  25224778 aaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtct 25224828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 323 - 471
Target Start/End: Complemental strand, 48204473 - 48204325
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| |||    
T  48204473 acccaagagtgcttagatgagatggaacgagtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaacgttaaaaccctt 48204374  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagt 471  Q
    ||||||||| || |  |||||||||| ||||||||| | ||||||||||    
T  48204373 agggagagcttgtcgtccatttgggttccacaatgctcaagggattagt 48204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 325 - 457
Target Start/End: Original strand, 38331109 - 38331241
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||| ||| ||||||| | ||| ||||||||||| ||||||||||||||    
T  38331109 ccaagagcgcttagatgagatggatcgggtctcttctaacttaaccaatgtcctgagtttgaatccaactttgagcatgcagcagcgttaaaactcttag 38331208  T
Q  425 ggagagcctgccacccatttgggtcccacaatg 457  Q
     |||||| |||| ||||||||||||||||||||    
T  38331209 agagagcttgccgcccatttgggtcccacaatg 38331241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 323 - 448
Target Start/End: Original strand, 38088614 - 38088739
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||| |  |||||||||||||| |||||||||||| || ||||||||||||    
T  38088614 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggttccaggttcgaatccagctttgggcatgcagtagcgttaaaactctt 38088713  T
Q  423 agggagagcctgccacccatttgggt 448  Q
    ||||||| | |||| || ||||||||    
T  38088714 agggagaacttgccgcctatttgggt 38088739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 14352533 - 14352645
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgg----gcatgcagcagtgttaaaac 418  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||||| |  | |||||||||||||||||||    ||||||||||||||||||||    
T  14352533 acccaagagcgcttagatgagatggaacaagtctcttctagcttaaccaagatattcggttcgaatccagccttggacatgcatgcagcagtgttaaaac 14352632  T
Q  419 tcttagggagagc 431  Q
    ||||| |||||||    
T  14352633 tcttacggagagc 14352645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 385 - 473
Target Start/End: Original strand, 20861289 - 20861377
Alignment:
Q  385 gaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||    
T  20861289 gaatccagcattgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtct 20861377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 436
Target Start/End: Original strand, 42514586 - 42514698
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagca--gtgttaaaactctta 423  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||| || ||| |||||||||||||| | ||||||||||| ||  | |||||||||||||    
T  42514586 caagagcgcttagatgagatgaaacgtgtctcttctagcttaactaaagtcttgggttcgaatccaactttgggcatgcatcagcgcgttaaaactctta 42514685  T
Q  424 gggagagcctgcc 436  Q
    |||||||| ||||    
T  42514686 gggagagcttgcc 42514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 381 - 473
Target Start/End: Original strand, 55123134 - 55123226
Alignment:
Q  381 gttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||||||||||||  ||||||||| ||||||| ||||||||||||| ||| ||||||||||||| |||||||| | ||||||||||||    
T  55123134 gttcgaatccagccttggaaatgcagcagcgttaaaattcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtct 55123226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 473
Target Start/End: Original strand, 40294603 - 40294741
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    ||||||||||||  ||| ||||| |||| ||||| |||||||||| ||||||||||||||||||  ||||| || |||||||||||||||||| ||| ||    
T  40294603 ttagatgagatgacacgagtctcctctaccttaatcaaggtcctgagttcgaatccagccttggatatgcaacaatgttaaaactcttagggaaagcttg 40294702  T
Q  435 ccacccatttgggtcccacaatgccccagggattagtct 473  Q
    || | ||||||  ||||||||| | | | ||||||||||    
T  40294703 ccgctcatttgaatcccacaatactcgaaggattagtct 40294741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 456
Target Start/End: Complemental strand, 48211099 - 48210989
Alignment:
Q  346 ggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttg 445  Q
    ||||||||||||||||| ||||| ||||||  | |||||||||||||||||| ||||||||||  ||||||||||||| ||||||| ||||  | ||||     
T  48211099 ggaacgggtctcttctaacttaatcaaggtttttggttcgaatccagccttgagcatgcagcaacgttaaaactcttatggagagcttgccgtctattta 48211000  T
Q  446 ggtcccacaat 456  Q
    |||||||||||    
T  48210999 ggtcccacaat 48210989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 326 - 473
Target Start/End: Original strand, 15283057 - 15283200
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    |||||||  ||||||||||||  ||| |||||||||| |||||| |||||   |||||||||||||| | ||||||||||||| | |||||||||||| |    
T  15283057 caagagcgtttagatgagatgatacgagtctcttctaacttaactaaggt---gggttcgaatccagtcatgggcatgcagca-tcttaaaactcttatg 15283152  T
Q  426 gagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    || ||  |||| ||||||||||||||||||||| | || |||||||||    
T  15283153 gaaagattgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 22755651 - 22755725
Alignment:
Q  351 gggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    |||||| |||||| |||||||| || || ||||||||||||||||||||||||||||||  ||||||||||||||    
T  22755651 gggtctattctaggttaaccaaagtactaggttcgaatccagccttgggcatgcagcagcattaaaactcttagg 22755725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 429
Target Start/End: Original strand, 22288216 - 22288320
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||| ||| |||||||||||||  | |  ||||||||| ||||||||| |||||| |||||||| ||||||||  |||||| || |||||||||||||||    
T  22288216 ccaaaagcgcttagatgagatgacatgaatctcttctaacttaaccaaagtcctgagttcgaattcagccttgaacatgcaacaatgttaaaactcttag 22288315  T
Q  425 ggaga 429  Q
    |||||    
T  22288316 ggaga 22288320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 46604720 - 46604657
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaat 388  Q
    |||||||| |||||||||||||||||| ||||||| || |||||||||||| ||||||||||||    
T  46604720 ccaagagcgcttagatgagatggaacgagtctcttataacttaaccaaggttctgggttcgaat 46604657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 3765225 - 3765326
Alignment:
Q  323 acccaagagcacttagatgagatggaacggg-tctcttctagcttaacca-aggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 420  Q
    ||||||||||||||  ||||||||| | ||| ||||||| |||||||||| ||||||||||||||||| || || || | |||||||||||||||| |||    
T  3765225 acccaagagcacttgaatgagatggtaagggatctcttccagcttaaccagaggtcctgggttcgaattcaaccctgagaatgcagcagtgttaaatctc 3765324  T
Q  421 tt 422  Q
    ||    
T  3765325 tt 3765326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 456
Target Start/End: Original strand, 11767138 - 11767222
Alignment:
Q  372 aggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaat 456  Q
    |||||||||||||||||| | ||||||||||||| || | |||||||||||||  || || |||| |||||||| ||||||||||    
T  11767138 aggtcctgggttcgaatctatccttgggcatgcaacaatattaaaactcttagcaagtgcttgccgcccatttgagtcccacaat 11767222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 456
Target Start/End: Original strand, 1642644 - 1642718
Alignment:
Q  382 ttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaat 456  Q
    |||||||| |||||||  |||||||| ||||||||||| |||||||||| || ||  ||||||||||||||||||    
T  1642644 ttcgaatctagccttgaacatgcagccgtgttaaaacttttagggagagtctaccgtccatttgggtcccacaat 1642718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 28967333 - 28967243
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||| ||||||||  ||| |||||||||| ||||||||||||| || ||||||||  ||||||| | |||||||| || ||||||||||||    
T  28967333 cttacatgagatgacacgagtctcttctaacttaaccaaggtcatgtgttcgaattgagccttgtgtatgcagcaatgctaaaactcttag 28967243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 424
Target Start/End: Original strand, 54877840 - 54877913
Alignment:
Q  351 gggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||||||| ||||||||||||  || ||| |||| ||||||||||||| || ||  ||||||||||||||    
T  54877840 gggtctcttctaacttaaccaaggttttgagtttgaattcagccttgggcatccaacaacgttaaaactcttag 54877913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 473
Target Start/End: Original strand, 15446028 - 15446125
Alignment:
Q  380 ggttcgaatccagccttgggcat----gcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||||||||||    ||||||||||||| | || || ||||||  ||||  ||||||||||| |||||||| | | ||||||||||    
T  15446028 ggttcgaatccagccttgggcattcgtgcagcagtgttaatattcgtatggagagtttgccgtccatttgggtctcacaatgctcgacggattagtct 15446125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 417
Target Start/End: Original strand, 20711771 - 20711839
Alignment:
Q  349 acgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaa 417  Q
    ||||||||||| |||||||||||||||||||  || ||| | |||||||||||| ||| || |||||||    
T  20711771 acgggtctcttgtagcttaaccaaggtcctgaatttgaaacaagccttgggcatacagtagcgttaaaa 20711839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 2195676 - 2195602
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttg 397  Q
    ||||||||||||||| |||| ||||  || ||||||||||||||||| ||||| ||| ||| |||| ||| ||||    
T  2195676 acccaagagcacttaaatgaaatggtgcgtgtctcttctagcttaactaaggttctgagtttgaattcagtcttg 2195602  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 43621444 - 43621323
Alignment:
Q  356 tcttctagcttaaccaaggtcct--gggttcgaatccagcctt-gggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtccca 452  Q
    |||||||| |||||||||||  |  |||||||||||||  ||| ||| ||||||||  ||||||||| ||||||||||| |||| |||||||  ||| ||    
T  43621444 tcttctagtttaaccaaggttttttgggttcgaatccaaactttgggtatgcagcaacgttaaaacttttagggagagcttgcctcccatttaagtctca 43621345  T
Q  453 c-aatgccccagggattagtct 473  Q
    | ||||| | ||||||||||||    
T  43621344 caaatgctcgagggattagtct 43621323  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 20616205 - 20616145
Alignment:
Q  361 tagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    ||||||||| || || |||| ||||||||||| ||||| |||||||||| ||| |||||||    
T  20616205 tagcttaactaaagttctggattcgaatccagtcttggacatgcagcagcgttgaaactct 20616145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 22022099 - 22022249
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||  |||||||||||    
T  22022099 acccaagagcgtttagatgagatggaacaggtctcttctagcttaactaaggttgtgggttcgaatccagccttgggcatgcagcagcattaaaactctt 22022198  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||| | ||||||||||||||||||||||||   | ||||||||||||    
T  22022199 agggagaacttgccacccatttgggtcccacaatattcgagggattagtct 22022249  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 322 - 473
Target Start/End: Original strand, 16756060 - 16756211
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| |||||||||||| || |||||||||||    
T  16756060 aacccaagagcgcttagatgagatggaacggatctcttctagcttaaccaaggttctgggtttgaattcagcattgggcatgcagaagcgttaaaactct 16756159  T
Q  422 tagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||| || |   ||||||||||||||||||| | ||||||||||||    
T  16756160 tagggagagcatgtcgtgcatttgggtcccacaatgctcgagggattagtct 16756211  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 320 - 431
Target Start/End: Original strand, 45806212 - 45806323
Alignment:
Q  320 ttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaact 419  Q
    |||||||| |||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  45806212 ttaacccaggagcgcttagatgagatagaacgggtctcttctatcttaaccaaggtcctgagttcgaattcagtcttgggcatgcagcagttttaaaact 45806311  T
Q  420 cttagggagagc 431  Q
    ||||||||||||    
T  45806312 cttagggagagc 45806323  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 341 - 473
Target Start/End: Original strand, 12035546 - 12035679
Alignment:
Q  341 gagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgtt-aaaactcttagggagagcctgccacc 439  Q
    ||||||||| ||||||||||||| |||||||| ||| | ||||||||||||||||| |||||||| || |||| ||||||||||||||||| ||||| ||    
T  12035546 gagatggaaagggtctcttctagtttaaccaaagtctttggttcgaatccagcctttggcatgcaacattgttaaaaactcttagggagagtctgccgcc 12035645  T
Q  440 catttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||||||||||||| | ||||||||||||    
T  12035646 catttgggtcccacaatgctcgagggattagtct 12035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 323 - 471
Target Start/End: Complemental strand, 9781146 - 9781003
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||  ||||||||||| |||||| ||||||     ||||  |||||| || ||||||||||||||||||||||||||||| ||||||||||||    
T  9781146 acccaagagcgtttagatgagatagaacggatctctt-----ttaattaaggtcttgagttcgaatccagccttgggcatgcagcagcgttaaaactctt 9781052  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagt 471  Q
    |||||||| | ||| ||||||||||||||||||||| | ||||||||||    
T  9781051 agggagagtcggccgcccatttgggtcccacaatgctcgagggattagt 9781003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 28724652 - 28724801
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||  ||| |||||| ||||||| ||||||||  |||||| ||||||||||||||||    
T  28724652 acccaagagcgcttagatgagatggaacgagtctcttctagcttaataaag-tcctggattcgaattcagccttgaacatgcaacagtgttaaaactctt 28724750  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||| |||| |||||  ||||||| |||| ||||||  | ||||||||||||    
T  28724751 aggaagagtctgccgtccatttgagtcctacaatgttcgagggattagtct 28724801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 18428271 - 18428154
Alignment:
Q  355 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccaca 454  Q
    ||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||   |||||| || ||||||    
T  18428271 ctcttgtagcttaaccaaggttctggattcgaatccaaccttgggcatgcagcagtgttaaaacttttagggagagtctgctgtccattt-ggccccaca 18428173  T
Q  455 atgccccagggattagtct 473  Q
    |||| | ||||||||||||    
T  18428172 atgctcgagggattagtct 18428154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 29124736 - 29124825
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||||||| |||| ||||||||||||||||||| |||| || ||||||||||||| ||||||||||||||| ||||||||||||||    
T  29124736 ttagatgagatgaaacgagtctcttctagcttaaccagggtcatgagttcgaatccagcattgggcatgcagcagcgttaaaactcttag 29124825  T

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Target: chr1; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 325 - 458
Target Start/End: Original strand, 10840998 - 10841132
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||| ||||||||||||| ||| ||||||||||| |||||||||| |  ||||||| ||| |||||||||||||| | ||  ||||||| ||||||    
T  10840998 ccaagagcgcttagatgagatgaaacaggtctcttctatcttaaccaagattttgggttcaaattcagccttgggcatgtaacaacgttaaaattcttag 10841097  T
Q  425 ggagagcctgccacccattt-gggtcccacaatgc 458  Q
    ||||| | |||| ||||||| ||||||||||||||    
T  10841098 ggagaacttgcctcccatttagggtcccacaatgc 10841132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 334 - 455
Target Start/End: Original strand, 24801371 - 24801492
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcct 433  Q
    |||||||||||||  |||| | |||| ||| ||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||  |    
T  24801371 cttagatgagatgacacggatttcttatagattaactaaagtccttggttcgaatccagccttaggcatgcagcactgttaaaactcttagggagagttt 24801470  T
Q  434 gccacccatttgggtcccacaa 455  Q
     ||  ||||||| |||||||||    
T  24801471 accgtccatttgagtcccacaa 24801492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 17600648 - 17600561
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||| ||  ||||||||||||    
T  17600648 ttagatgagatgacacgggtctcttctagcttaaccaaggtcttgggttagaattcagccttgagcatgcaacatcgttaaaactctt 17600561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 36806649 - 36806740
Alignment:
Q  382 ttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||| ||||||||||||| ||| || |||||||||||||||||| | ||||| ||||||||||| ||||||||| | ||||||||||||    
T  36806649 ttcgaattcagccttgggcatacagtagcgttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtct 36806740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 32883699 - 32883625
Alignment:
Q  356 tcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    |||||||||||||||||| |  |||||||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  32883699 tcttctagcttaaccaagattttgggttcgaatccagcattggacatgcagcagcgttaaaactcttagggagag 32883625  T

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Target: chr1; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 473
Target Start/End: Original strand, 10750579 - 10750726
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||| ||||||||||||| |||  |||| |||||  |||||||||||| |||||||||||| |  ||||||||| || ||| |||||||||||||     
T  10750579 ccaagagcgcttagatgagatgaaacatgtcttttctaatttaaccaaggtcttgggttcgaatctaatcttgggcatacatcagcgttaaaactctta- 10750677  T
Q  425 ggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    || | || |||| ||||||||| || |||||||  | ||||||||||||    
T  10750678 ggtgcgcttgccgcccatttggatcgcacaatgttcgagggattagtct 10750726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 35692467 - 35692571
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    ||||||| |||||||||||||| | |||||| |||||| |||||||| ||| || ||||||||||| | ||||||||||| |   |||||||||||||||    
T  35692467 caagagcgcttagatgagatggcatgggtcttttctagtttaaccaatgtcttgagttcgaatccaacattgggcatgcaacgacgttaaaactcttagg 35692566  T
Q  426 gagag 430  Q
    |||||    
T  35692567 gagag 35692571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 14500420 - 14500361
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggt 382  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14500420 acccaagagtgcttagatgcgatggaacgggtctcttctagcttaaccaaggtcctgggt 14500361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 36982346 - 36982441
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    ||||||||||||  || |||||||||||| ||||||||||||  |||||||||| ||||||| | |||||| ||  ||||||||||||||||||||    
T  36982346 ttagatgagatgacacaggtctcttctagtttaaccaaggtctcgggttcgaattcagccttagacatgcaacaacgttaaaactcttagggagag 36982441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 378 - 457
Target Start/End: Complemental strand, 39547471 - 39547392
Alignment:
Q  378 tgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatg 457  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||||| ||| ||||| || |||| |||| |||||||    
T  39547471 tgggttcgaatccagtcttgagcatgcagcagtgtcaaaactcttagggggagtctgccgcctatttaggtctcacaatg 39547392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 473
Target Start/End: Original strand, 46864105 - 46864220
Alignment:
Q  358 ttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatg 457  Q
    ||||||||||| ||| ||  ||||||| |||||||| |||||||||||| || ||||||| ||||||||||| | ||||  ||||||||||  |||||||    
T  46864105 ttctagcttaatcaaagttttgggttcaaatccagctttgggcatgcagtagcgttaaaattcttagggagaacttgccgtccatttgggtttcacaatg 46864204  T
Q  458 ccccagggattagtct 473  Q
      | ||||||||||||    
T  46864205 ttcgagggattagtct 46864220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 31733820 - 31733746
Alignment:
Q  356 tcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    ||||||| ||||||||| ||  ||||||||||| |||| || |||||||||||| ||||||||||||||||||||    
T  31733820 tcttctaacttaaccaatgttttgggttcgaattcagcattaggcatgcagcagagttaaaactcttagggagag 31733746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 42297523 - 42297454
Alignment:
Q  404 cagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||| |||||||||||||||||||| |||||  ||||||||||| |||||||| | ||||||||||||    
T  42297523 cagcagcgttaaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtct 42297454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 52912616 - 52912702
Alignment:
Q  339 atgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttaggga 427  Q
    ||||||||||||||||||||  ||||||||||||| || ||||||||||||||| |||  ||||| ||||  ||||||||||| |||||    
T  52912616 atgagatggaacgggtctctattagcttaaccaagatcttgggttcgaatccagtctt--gcatgtagcaacgttaaaactctcaggga 52912702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 430
Target Start/End: Original strand, 40019231 - 40019327
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    ||||||||| |||  ||| |||||||||| ||||| ||||||  ||||||||||| |||||||||  ||||||||  |||||||||||| |||||||    
T  40019231 cttagatgaaatgatacgagtctcttctaacttaatcaaggttttgggttcgaattcagccttggatatgcagcaacgttaaaactcttggggagag 40019327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 25655414 - 25655319
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 430  Q
    ||||||||||||||||   | ||||||| ||||| |||||| ||||||||||||  | | ||||||||||||||  |||||||||||||| |||||    
T  25655414 ttagatgagatggaacaaatatcttctaacttaatcaaggttctgggttcgaatttaacattgggcatgcagcaacgttaaaactcttagagagag 25655319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 458
Target Start/End: Complemental strand, 36522381 - 36522263
Alignment:
Q  340 tgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacc 439  Q
    ||||||||||||| | | |||||||||||| ||  | ||  |||||||| ||| ||| | |||||||||  ||||||||||||||||||||  ||||  |    
T  36522381 tgagatggaacggattttttctagcttaactaaatttctaagttcgaatacagtcttagacatgcagcaaggttaaaactcttagggagagtttgccgtc 36522282  T
Q  440 catttgggtcccacaatgc 458  Q
    |||||| ||||||||||||    
T  36522281 catttgagtcccacaatgc 36522263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 7242912 - 7242847
Alignment:
Q  380 ggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttg 445  Q
    ||||||||||||| ||||| |||||||||  |||||||||||||||||||| || || ||||||||    
T  7242912 ggttcgaatccagtcttggacatgcagcaacgttaaaactcttagggagagtctacctcccatttg 7242847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 444
Target Start/End: Original strand, 7624870 - 7624973
Alignment:
Q  339 atgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccac 438  Q
    ||||||||||||  |||| |||||||||||||||| |  ||||||| ||||||||||||| |||||| |||| | ||||||| || ||||||| ||||||    
T  7624870 atgagatggaacaagtct-ttctagcttaaccaagattatgggttcaaatccagccttggacatgcaacagtctgaaaactcgta-ggagagcttgccac 7624967  T
Q  439 ccattt 444  Q
    | ||||    
T  7624968 ctattt 7624973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 21774612 - 21774668
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 409  Q
    |||||||||||||||| ||||||  ||||||||||||||| ||||| ||||||||||    
T  21774612 gtctcttctagcttaatcaaggttttgggttcgaatccagtcttggacatgcagcag 21774668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 431
Target Start/End: Original strand, 32534074 - 32534170
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagc 431  Q
    |||||||| |||  |||||| ||||||||||||||||||||  ||| ||| ||| |||| ||| ||||||| ||  |||||||||||||| ||||||    
T  32534074 ttagatgatatgacacgggtttcttctagcttaaccaaggttttggattcaaattcagctttgagcatgcaacaacgttaaaactcttagagagagc 32534170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 423
Target Start/End: Original strand, 36086848 - 36086936
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctta 423  Q
    ||||||||||||  | | ||||||| ||| ||||| ||||||||| |||||||||||| |||| ||||||| |  ||||||||||||||    
T  36086848 ttagatgagatgacaagagtctcttttagtttaacaaaggtcctgagttcgaatccagtcttgcgcatgcaaccatgttaaaactctta 36086936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 473
Target Start/End: Original strand, 44913180 - 44913238
Alignment:
Q  415 aaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| | || |||||||||    
T  44913180 aaactcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtct 44913238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 28506280 - 28506369
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||| |||  || |||||||||||| ||||| ||||| |||| |||||||  | | |||| |||||||||||||| ||||||||||    
T  28506280 ttagatgaaatgacacaggtctcttctagtttaactaaggttctggattcgaatttaactttggacatgcagcagtgttgaaactcttag 28506369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 33059870 - 33059756
Alignment:
Q  337 agatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgcc 436  Q
    ||||||||||| || ||| |||||||| ||||||||| || ||||||| |||| ||  ||| |||    |||  ||||||||||||| ||||||  ||||    
T  33059870 agatgagatggtactggtatcttctagtttaaccaagatcatgggttcaaatctagttttgagca----gcaacgttaaaactcttaaggagagtttgcc 33059775  T
Q  437 acccatttgggtcccacaa 455  Q
     ||||||||||||||||||    
T  33059774 gcccatttgggtcccacaa 33059756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 15642526 - 15642569
Alignment:
Q  415 aaactcttagggagagcctgccacccatttgggtcccacaatgc 458  Q
    ||||||||||||||||  |||| |||||||||||||||||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgc 15642569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 9066190 - 9066128
Alignment:
Q  346 ggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagca 408  Q
    |||||| ||||||||||| |||||||| ||  ||| ||||||||||| |||||| ||||||||    
T  9066190 ggaacgagtctcttctagtttaaccaaagttttggattcgaatccagtcttgggtatgcagca 9066128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 48728057 - 48728107
Alignment:
Q  372 aggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||| ||| |||||||||| |||||||||||| |||||||| |||||    
T  48728057 aggtcctgagtttgaatccagccatgggcatgcagctgtgttaaatctctt 48728107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 455
Target Start/End: Original strand, 13546436 - 13546537
Alignment:
Q  354 tctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccac 453  Q
    ||||||||| |||||| || ||| ||||||||||||||| |||   |||| | || |||||||||||||| ||||||  | || ||||||||  ||||||    
T  13546436 tctcttctaacttaactaaagtcgtgggttcgaatccagtcttatacatgtaacaatgttaaaactcttatggagagtttaccgcccatttgaatcccac 13546535  T
Q  454 aa 455  Q
    ||    
T  13546536 aa 13546537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 38465799 - 38465759
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagc 393  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  38465799 gtctcttctagtttaactaaggttctgggttcgaatccagc 38465759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 334 - 473
Target Start/End: Original strand, 12411138 - 12411277
Alignment:
Q  334 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcct 433  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||    
T  12411138 cttagatgagatggaacaggtctcttctaacttaaccaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtct 12411237  T
Q  434 gccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||| |||||||  ||||||||||||   ||||||||||||    
T  12411238 gccgcccatttaagtcccacaatgcttgagggattagtct 12411277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 322 - 458
Target Start/End: Original strand, 31412101 - 31412236
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||| |||||| ||| | ||||| |||| |||||| ||||||||||||||||||||    
T  31412101 aacccaagagcacttagatgagatggaacgggtctctcatagtttaactaaggtcatggat-cgaattcagctttgggcgtgcagcagtgttaaaactct 31412199  T
Q  422 tagggagagcctgccacccatttgggtcccacaatgc 458  Q
    ||||||||| ||||| ||||||||||| |||||||||    
T  31412200 tagggagagtctgccgcccatttgggttccacaatgc 31412236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 323 - 473
Target Start/End: Original strand, 21910184 - 21910333
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    ||||||||||  |||||||||||| |||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  21910184 acccaagagcgtttagatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatccagccttgggcatgcaacatcgttaaaactctt 21910283  T
Q  423 agggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    || ||||| ||||| | ||||| |||||||||||  | |||||||||||||    
T  21910284 agagagagtctgccgctcatttaggtcccacaat-actcagggattagtct 21910333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 326 - 471
Target Start/End: Original strand, 423637 - 423782
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    ||||||| ||||||||||||||||| | |||||||||| |||||||||||  |||||| |||||||||||||||||||| |||| ||||||||||||||     
T  423637 caagagcgcttagatgagatggaacagatctcttctagtttaaccaaggttttgggtttgaatccagccttgggcatgctgcagcgttaaaactcttaga 423736  T
Q  426 gagagcctgccacccatttgggtcccacaatgccccagggattagt 471  Q
    || |  |||||  ||||||| |||||||||||| | ||||||||||    
T  423737 gataaactgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 339 - 473
Target Start/End: Complemental strand, 21029129 - 21028991
Alignment:
Q  339 atgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcat------gcagcagtgttaaaactcttagggagagcc 432  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||      ||||||| |||||||||||||  |||||      
T  21029129 atgagatggcacgggtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagatgcagcagcgttaaaactctta--gagagtt 21029032  T
Q  433 tgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||| ||||||||||| |||||| || | ||||||||||||    
T  21029031 tgccgcccatttgggtgccacaaggctcaagggattagtct 21028991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 28099251 - 28099328
Alignment:
Q  352 ggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggaga 429  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28099251 ggtctcttctaccttaactaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaacttttagggaga 28099328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 12837005 - 12836909
Alignment:
Q  377 ctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||  ||| |||||||||||||||||||||   ||||||||||||    
T  12837005 ctgggttcgaatccagccttaggcatgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtct 12836909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 322 - 473
Target Start/End: Original strand, 25084012 - 25084163
Alignment:
Q  322 aacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    ||||||||| |||||||||||||||  ||  |||||||||||||||| ||| ||| || |||||||| ||| ||||| ||||||||| ||||||||||||    
T  25084012 aacccaagaacacttagatgagatgacacaagtctcttctagcttaatcaaagtcttgagttcgaattcagtcttggacatgcagcaatgttaaaactct 25084111  T
Q  422 tagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||| || || ||||||  || ||||||||| | || |||||||||    
T  25084112 tagggagagcttgtcatccatttaagttccacaatgctcgagagattagtct 25084163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 473
Target Start/End: Complemental strand, 15614733 - 15614585
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||| |||| ||||||||||||| |||||||||| ||||||||| ||| ||||||||||| ||| ||||| |||| ||||  ||||||||| || |    
T  15614733 ccaagagcgcttatatgagatggaacgagtctcttctaacttaaccaatgtcatgggttcgaattcagtcttggacatgtagcaacgttaaaacttttcg 15614634  T
Q  425 ggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    | ||| | | ||||| ||||| |||||||||||| | ||| ||||||||    
T  15614633 gaagaacttaccacctatttgagtcccacaatgctctaggaattagtct 15614585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 456
Target Start/End: Complemental strand, 31107643 - 31107522
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 434  Q
    |||||||||||| || |||||||||||| |||||| ||||| ||| ||||||||||||| |||| |||||| ||| |||||||||||| |||||||| |     
T  31107643 ttagatgagatgaaatgggtctcttctaacttaactaaggttctgagttcgaatccagcattggacatgcaacagcgttaaaactctttgggagagctta 31107544  T
Q  435 ccacccatttgggtcccacaat 456  Q
    ||  |||||||  |||||||||    
T  31107543 ccgtccatttgattcccacaat 31107522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 472
Target Start/End: Original strand, 278374 - 278519
Alignment:
Q  326 caagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagg 425  Q
    |||||||  ||||||||||||  ||| ||||||||||||||||| |||||| || ||| ||||||||| ||||||||||| ||   |||||||||||| |    
T  278374 caagagcgtttagatgagatgacacgagtctcttctagcttaactaaggtcttgagtttgaatccagctttgggcatgcaaca-cattaaaactcttatg 278472  T
Q  426 gagagcctgccacccatttgggtcccacaatgccccagggattagtc 472  Q
    |||||  ||||  |||||| ||||||||||  | | |||||||||||    
T  278473 gagagtttgccgtccatttaggtcccacaaaactcaagggattagtc 278519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 444
Target Start/End: Original strand, 5944821 - 5944942
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||||  |||| || |||||  ||||||||||| || |||||||||||||||| |||||||| ||| ||| | |||| | || |||||||||| ||    
T  5944821 acccaagagtgcttatataagatgatacgggtctcttttaacttaaccaaggtcctgagttcgaattcagtctttgacatgtaacattgttaaaactttt 5944920  T
Q  423 agggagagcctgccacccattt 444  Q
    ||||||||  |||| |||||||    
T  5944921 agggagagtttgccgcccattt 5944942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 27735469 - 27735557
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    ||||||||||||| || |||||||| |||||||||||| || ||| |||||||| || |||||| |||| ||| ||||||||||||||||    
T  27735469 ttagatgagatggcacaggtctcttttagcttaaccaatgt-ctgagttcgaatacaaccttggacatggagcggtgttaaaactcttag 27735557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 3237911 - 3238002
Alignment:
Q  335 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttaggg 426  Q
    ||||||||||||  | | ||||||||||  ||||||||| |||| ||||||||||||||||||  ||| ||| | |||||||||||||||||    
T  3237911 ttagatgagatgatatgtgtctcttctaatttaaccaagatccttggttcgaatccagccttgaacattcagtaatgttaaaactcttaggg 3238002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 444
Target Start/End: Complemental strand, 26477859 - 26477740
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    |||||||| |||| ||||||||  |||| ||| || ||||||||||||| || ||  || ||||||||||| ||  ||||||||  ||||||| ||||||    
T  26477859 ccaagagcgcttaaatgagatgacacggatctattttagcttaaccaagatcttgaatttgaatccagcctcggaaatgcagcaacgttaaaattcttag 26477760  T
Q  425 ggagagcctgccacccattt 444  Q
    ||||||  ||||||||||||    
T  26477759 ggagagtttgccacccattt 26477740  T

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Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 427
Target Start/End: Original strand, 35224550 - 35224651
Alignment:
Q  323 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactctt 422  Q
    |||||||| | |||| |||||||||||||||||||||    |||||||||||| || | |||||||| || ||||||| |||||||  |||||||||||     
T  35224550 acccaagaacgcttaaatgagatggaacgggtctcttt---cttaaccaaggttctagattcgaatctagtcttgggcgtgcagcaacgttaaaactctc 35224646  T
Q  423 aggga 427  Q
    |||||    
T  35224647 aggga 35224651  T

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Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 458
Target Start/End: Original strand, 28933119 - 28933252
Alignment:
Q  325 ccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttag 424  Q
    ||||||||  ||||||||||| ||| | ||||||| || |||||| || ||||||  || |||| ||||||| | |||||| ||  ||||||| ||||||    
T  28933119 ccaagagcgtttagatgagatagaatgagtctcttttatcttaactaaagtcctgattttgaattcagccttagacatgcaacatcgttaaaattcttag 28933218  T
Q  425 ggagagcctgccacccatttgggtcccacaatgc 458  Q
     |||||  |||| ||||||||||| |||||||||    
T  28933219 agagagtttgccgcccatttgggttccacaatgc 28933252  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 7468671 - 7468581
Alignment:
Q  354 tctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccatttg 445  Q
    |||| |||| ||||| |||||||||| ||| ||| ||||  |||||||||||||||   ||||||||||| ||||||  |||||||||||||    
T  7468671 tctcctctaccttaatcaaggtcctgagtttgaaaccagttttgggcatgcagcagcagtaaaactctta-ggagagtttgccacccatttg 7468581  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 29185307 - 29185378
Alignment:
Q  358 ttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggaga 429  Q
    |||||| ||||| ||||| || |||||||||||||| || | |||||| ||  |||||||||||||||||||    
T  29185307 ttctagtttaactaaggttctaggttcgaatccagcattagacatgcatcaacgttaaaactcttagggaga 29185378  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 473
Target Start/End: Complemental strand, 21028924 - 21028854
Alignment:
Q  401 atgcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    ||||||||| ||||||||||||||  ||||  |||| ||||||||||| |||||| || | ||||||||||||    
T  21028924 atgcagcagcgttaaaactcttag--agagtttgccgcccatttgggtgccacaaggctcaagggattagtct 21028854  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 33792980 - 33793048
Alignment:
Q  353 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactct 421  Q
    ||||||| |||||||| |||| ||||| |||| ||| |||||||| ||||||| ||  |||||||||||    
T  33792980 gtctcttttagcttaatcaagatcctgagttcaaattcagccttgcgcatgcaacaacgttaaaactct 33793048  T

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Target: scaffold0020 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 320 - 409
Target Start/End: Original strand, 167831 - 167918
Alignment:
Q  320 ttaacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 409  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||    
T  167831 ttaacccaagagcgcttagatgagatgaaacgggtctcttctagcttaatcaaggtc--gggttcaaatccagccttgggcatgcagcag 167918  T

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Target: scaffold0009 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 32421 - 32330
Alignment:
Q  328 agagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaact 419  Q
    |||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||| ||||||||| |||||||||    
T  32421 agagcatttagataagatggaacgggtctcttctagcttcaccaaggttctgggttcgaatccaatcttgggtatgcagcagcgttaaaact 32330  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 27296 - 27237
Alignment:
Q  414 aaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||||| |||| ||||||||| || ||| |||| | ||||||||||||    
T  27296 aaaactcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtct 27237  T

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Target: scaffold0189 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 444
Target Start/End: Original strand, 10973 - 11052
Alignment:
Q  365 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccacccattt 444  Q
    ||||| |||||||| ||||||||||||   ||||||||||| || |||||||||||||| ||||||  |||| |||||||    
T  10973 ttaactaaggtcctaggttcgaatccatttttgggcatgcaacaatgttaaaactcttacggagagtttgccgcccattt 11052  T

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Target: scaffold0071 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 473
Target Start/End: Complemental strand, 16164 - 16067
Alignment:
Q  380 ggttcgaatccagccttgggcat----gcagcagtgttaaaactcttagggagagcctgccacccatttgggtcccacaatgccccagggattagtct 473  Q
    |||||||||||||||||||||||    ||||||||||||| | || || ||||||  ||||  ||||||||||| |||||||| | | ||||||||||    
T  16164 ggttcgaatccagccttgggcattcgtgcagcagtgttaatattcgtatggagagtttgccgtccatttgggtctcacaatgctcgacggattagtct 16067  T

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