View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_low_5 (Length: 370)
Name: NF3019_1D_low_5
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 43099842 - 43100182
Alignment:
| Q |
1 |
acaatatttgtttgtcatagcaaaatggattttagtgactgatgaaatgaggtaattgattaatttaagagtctagagcacacatttgacatcgaagcat |
100 |
Q |
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| T |
43099842 |
acaatatttgtttgtcatagcaaaatggattttagtgactgatgaaatgaggtaattgattaatttaagagtctagtgcacacatttgacatcgaagcat |
43099941 |
T |
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| Q |
101 |
taggcttattttgcgtggtaccaaagaattcagtgtctatttcatcttggtttcctgaatagtcttggttgtttgaaagctacaatttccaaatgaaata |
200 |
Q |
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| T |
43099942 |
taggcttattttgcgtggtaccaaagaattcagtgtctatttcatcttggtttcctgaatagtcttggttgtttgaaagctacaatttccaaatgaaata |
43100041 |
T |
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| Q |
201 |
tatcaacaccaaaaatcttatatctaaaaattttaatcattaattcaaattatagggtgatctcatatattgagacatttgatttcatatacctgatgta |
300 |
Q |
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| T |
43100042 |
tataaacaccaaaaatcttatatctaaaaattttaatcattaattcaaattatagggtgatctcatatattgagacatttgatttcatatacctgatgta |
43100141 |
T |
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| Q |
301 |
gagtcgagccagattgttgataattcctggtttcatatcag |
341 |
Q |
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| T |
43100142 |
gagtcgagccagattgttaataattcctggtttcatgtcag |
43100182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 40871065 - 40870951
Alignment:
| Q |
103 |
ggcttattttgcgtggtaccaaagaattcagtgtctatttcatcttggtttcctgaatagtcttggttgtttgaaagctacaatttccaaatgaaat--a |
200 |
Q |
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| T |
40871065 |
ggcttatcttgtgtagtaccaaggaactcaatgtctatttcatcatgggttcctttgtgatcttctatgtttgaaagctacaattcccaaatgaaattaa |
40870966 |
T |
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| Q |
201 |
tatcaacaccaaaaa |
215 |
Q |
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| T |
40870965 |
tatcaacaccaaaaa |
40870951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 40870425 - 40870379
Alignment:
| Q |
270 |
ttgagacatttgatttcatatacctgatgtagagtcgagccagattg |
316 |
Q |
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| T |
40870425 |
ttgagacatttgatttcatatacctgtggtagagtcaagccagattg |
40870379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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