View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_1D_low_8 (Length: 340)
Name: NF3019_1D_low_8
Description: NF3019_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_1D_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 47502933 - 47502608
Alignment:
| Q |
15 |
agtgagaatgccaccaagagcaccagctatggcgtgggtgtggaacactgccatgggatcgtcgattttctttaagaaattaaccttgttgtggagtacc |
114 |
Q |
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| T |
47502933 |
agtgagaatgccaccaagagcaccagctatggcgtgggtgtggaacactgccatgggatcatcgattttctttaagaaattaaccttgttgtggagtacc |
47502834 |
T |
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| Q |
115 |
atcatcgtgtaccatggtatacttcctgatatgaaacccatcaagattgctgcccacccctgcacaactcctattcaaccatgacaaatgttaattgcaa |
214 |
Q |
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| T |
47502833 |
atcatcgtgtaccatggtatacttcctgatatgaaacccatcaagattgctgcccacccctgcacaactcctattcaaccatgacaaatgttaattgcaa |
47502734 |
T |
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| Q |
215 |
ctcgccatttaatgaatgtaa------cacnnnnnnnnnnnnnnnccaatgatgttataagattgaaggtgatc---ataatctttcaactacataaatt |
305 |
Q |
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| T |
47502733 |
ctcgccatttaatgaatgtaattatgtaacacttttttttttcttccaatgatgttataagattgaaggtgatcataataatctttcaactacataaatt |
47502634 |
T |
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| Q |
306 |
taaacagctaaaaccatggttaatca |
331 |
Q |
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| T |
47502633 |
taaacagctaaaaccatggttaatca |
47502608 |
T |
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