View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_2D_low_1 (Length: 475)
Name: NF3019_2D_low_1
Description: NF3019_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_2D_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 45553541 - 45553312
Alignment:
| Q |
20 |
ttgtttgtgaaccgggaatagggttcgtttttgttggtttgaaaagtttcaactttgggtatgaacca---------aaaaggttaccgatttcttttgg |
110 |
Q |
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| T |
45553541 |
ttgtttgtgaaccgggaatagggttcgtttttgttggtttgaaaagtttcaactttgggtatgaaccatttgaaccaaaaaggttaccgatttcttttgg |
45553442 |
T |
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| Q |
111 |
aaaaaggttatcaaatcaaatgaacaataatgatgaatttggaaagtaaagtgaatggggttaagttggttgttaatggggacatttggatattggattc |
210 |
Q |
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| T |
45553441 |
aaaaaggttatcaaatcaaatgaataataatgatgaatttggaaagtaaagtgaatggggttaagttggttgttaatggggacatttggatattggattc |
45553342 |
T |
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| Q |
211 |
gactatccattgcttgggcccttaacagtg |
240 |
Q |
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| T |
45553341 |
gactatccattgcttgggcccttaacagtg |
45553312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 275 - 475
Target Start/End: Complemental strand, 45553277 - 45553064
Alignment:
| Q |
275 |
gttggtccaagttaattaagatcaattaaattggtggcagggtaggtcatagtaggcactag-----------tagattctgnnnnnnnn--tctgacaa |
361 |
Q |
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| T |
45553277 |
gttggtccaagttaattaagatcaattaaattggtggcagggtaggtcatagtaggcactaggcaggcactagtagattctgaaaaataaaatctgacaa |
45553178 |
T |
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| Q |
362 |
acctgttactgcaattggcaacagcatttcaaaaccatgaaaccacaaatttacttcttgtcttccaagacccgaattcaatcaacattgtaaacttgta |
461 |
Q |
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| T |
45553177 |
acctgttactgcaattggtaacagcatttcaaaaccatgaaaccacaaatttacttcttgtcttccaagacccgaattcaatcaacattgtaaacttgta |
45553078 |
T |
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| Q |
462 |
aatagaattttcaa |
475 |
Q |
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| T |
45553077 |
aatagaattttcaa |
45553064 |
T |
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Back To:
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