View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_2D_low_13 (Length: 206)
Name: NF3019_2D_low_13
Description: NF3019_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_2D_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 52967250 - 52967440
Alignment:
| Q |
17 |
aaattcttgataatcttttgacatttctcaaattccgatccttgtttgaatcccaaaaa-taacaagaactctttgcaactcctatgcatcaaacaaaac |
115 |
Q |
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| T |
52967250 |
aaattcttgataatcttttgacatttctcaaattctgatccttgtttgaaccccaaaaaatagcaagaactctttgcaactcctatgcatcaaacaaaac |
52967349 |
T |
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| Q |
116 |
catctttgttgtcatcaaaagccatcttcacctcctcaagtttggctcattctcctaaaacacttcacaaacctccttgaactatactttt |
206 |
Q |
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| T |
52967350 |
catctttgttgtcatcaaaagccatcttcacctcctcaagtttggctcattctcctaaaacacttcacaaacctccttgaactatactttt |
52967440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 52971148 - 52971257
Alignment:
| Q |
24 |
tgataatcttttgacatttctcaaattccgatccttgtttgaatcccaaaaataacaagaactctttgcaactcctatgcatcaaacaaaaccatctttg |
123 |
Q |
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| T |
52971148 |
tgatcatcttttggcagttctcaaattctgatccttgtttcaatcccaaaa-taacaagaactctttgcaactcctttgcatc-aataaaaccatctttg |
52971245 |
T |
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| Q |
124 |
ttgtcatcaaaa |
135 |
Q |
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| T |
52971246 |
ttctcatcaaaa |
52971257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 2856040 - 2855924
Alignment:
| Q |
17 |
aaattcttgataatcttttgacatttctcaaattccgatccttgtttgaatcccaaaaataacaagaactctttgcaactcctatgcatcaaacaaaacc |
116 |
Q |
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| T |
2856040 |
aaattcttaatcatcttctgacaattctcaacttccgaaccttccttaaatcccaaaatacacat-aactcttttcaactccattgcatcaat-aaaacc |
2855943 |
T |
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| Q |
117 |
atctttgttgtcatcaaaa |
135 |
Q |
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| T |
2855942 |
atctttgttctcatcaaaa |
2855924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 2855922 - 2855842
Alignment:
| Q |
128 |
catcaaaagccatcttcacctcct-caagtttggctcattctcctaaaacacttcacaaacctcctt-gaactatactttt |
206 |
Q |
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||||||||||||||||||| |||| ||| ||||||||||||| | ||||| |||| ||| |||||| |||||||| |||| |
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| T |
2855922 |
catcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaattcagaaaactccttcgaactatattttt |
2855842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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