View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_2D_low_3 (Length: 432)
Name: NF3019_2D_low_3
Description: NF3019_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_2D_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 1629957 - 1630353
Alignment:
| Q |
20 |
catcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagtataatttaaatat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1629957 |
catcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagtataatttaaatat |
1630056 |
T |
|
| Q |
116 |
tataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctata |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630057 |
tataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctata |
1630156 |
T |
|
| Q |
216 |
agtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagcataatattgtcattatgaacagcaacctca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630157 |
agtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctca |
1630256 |
T |
|
| Q |
316 |
atgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630257 |
atgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgt |
1630353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 176 - 412
Target Start/End: Original strand, 1624142 - 1624378
Alignment:
| Q |
176 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
275 |
Q |
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|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1624241 |
T |
|
| Q |
276 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
375 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624242 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1624341 |
T |
|
| Q |
376 |
ttagcagcagcatttaaagcagcttgcacagtcttgt |
412 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1624342 |
ttagcagcagcatttaaagcagcttgcacagtcttgt |
1624378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 176 - 412
Target Start/End: Original strand, 1607121 - 1607357
Alignment:
| Q |
176 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
275 |
Q |
| |
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|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1607220 |
T |
|
| Q |
276 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607221 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1607320 |
T |
|
| Q |
376 |
ttagcagcagcatttaaagcagcttgcacagtcttgt |
412 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
1607321 |
ttagcagcagcatttaaagcagcctgcacagtcttgt |
1607357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 178 - 412
Target Start/End: Complemental strand, 10820160 - 10819926
Alignment:
| Q |
178 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcac |
277 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
278 |
caaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctctt |
377 |
Q |
| |
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| |||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
10820060 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
10819961 |
T |
|
| Q |
378 |
agcagcagcatttaaagcagcttgcacagtcttgt |
412 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
10819960 |
agcagcagcatttaaagcagcttgcacagtcttgt |
10819926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 10820741 - 10820598
Alignment:
| Q |
20 |
catcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataatttaaatattata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
10820741 |
catcaatacctaaatttaaatgatccaagagtaattatttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataatttaaatattata |
10820646 |
T |
|
| Q |
120 |
aacctatcttattataaaaatttagaacttcaaatgataaaataaaaa |
167 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| |||||||||||| |
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|
| T |
10820645 |
aacctatcttagtataaaattttagaacttcaaaatataaaataaaaa |
10820598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 1606659 - 1606689
Alignment:
| Q |
20 |
catcaatacctaaatttaaatgatccaagag |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
1606659 |
catcaatacctaaatttaaatgatccaagag |
1606689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 187 - 412
Target Start/End: Original strand, 18785179 - 18785404
Alignment:
| Q |
187 |
tataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagca |
286 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaaca |
18785278 |
T |
|
| Q |
287 |
taatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
386 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18785279 |
taatgttatcattgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
18785378 |
T |
|
| Q |
387 |
atttaaagcagcttgcacagtcttgt |
412 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
18785379 |
atttagagcagcttgcacagtcttgt |
18785404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 401
Target Start/End: Original strand, 12803384 - 12803590
Alignment:
| Q |
195 |
acctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagcataatattg |
294 |
Q |
| |
|
|||||| || ||||||||||| || ||| ||||| |||||||| ||||| ||||||||| | |||||| | |||||||| |||| ||||||||| |
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|
| T |
12803384 |
acctgcagtggcagagctataggtagtaaaaccagcttgaacatttctattacttgttatcactgtatttctacttccatcacctaccaacataatatta |
12803483 |
T |
|
| Q |
295 |
tcatt-atgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaa |
393 |
Q |
| |
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||||| || | ||||| |||| ||||||||||||||||||||||| ||| |||| ||||| ||||| ||| | ||||| | |||||||||||| | |
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| T |
12803484 |
tcattcatcttcc-caaccacaatattctctctataaacacctttcttcacacgtataacaaatcttgttttaaaccttctcctcccagcagcatttata |
12803582 |
T |
|
| Q |
394 |
gcagcttg |
401 |
Q |
| |
|
||| |||| |
|
|
| T |
12803583 |
gcatcttg |
12803590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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