View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_2D_low_4 (Length: 297)
Name: NF3019_2D_low_4
Description: NF3019_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_2D_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 45179281 - 45178987
Alignment:
| Q |
2 |
tatagaagtgaaaagaagtaaagatccagtgtcaagtgagtagttcttagcttaagttatgaaatattaagtatatccgaaagttagttgcaatattgtg |
101 |
Q |
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| T |
45179281 |
tatagaagtgaaaagaagtaaagatccagtgtcaagtgagtagttcttagcttaagttatgaaatattaagtatatccgaa-gttagttgcaatattgtg |
45179183 |
T |
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| Q |
102 |
ttgtgcacaaatgtgttaccagaatctggatatgaatatgatatagcgatgattannnnnnncaaatataagataggatacataatatttataaattcat |
201 |
Q |
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| T |
45179182 |
ttgtgcacaaatgtgttaccagaatctggatatgaatatgatttagggatgattatttttttcaaatataagataggatacataatatttataaattcat |
45179083 |
T |
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| Q |
202 |
aaaacatagtgtgtgtaaacacgtgcgcgcgcacacacacaattgcaatttactgttgcatgtttaacgtttggaataaaaatctaactaaactaa |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45179082 |
aaaacatagtgtgtgtaaacacgtgcgcgcggacacacacaattgcaatttactgttgcatgtttaacgtttggaataaaaatctaactaaactaa |
45178987 |
T |
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