View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_2D_low_8 (Length: 256)
Name: NF3019_2D_low_8
Description: NF3019_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_2D_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 48707901 - 48708037
Alignment:
| Q |
101 |
aaagtcttcaaacattcgttcaatcagagtagcaaggttgccacaaattgttttccttcacatgagagtgtacattctgaatggataagtattcgagatt |
200 |
Q |
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| T |
48707901 |
aaagtcttcaaacattcgttcaatcagagtagcaaggttgccacaaattgttttccttcac--gagagtgtacattctgaatggataagtattcgagatt |
48707998 |
T |
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| Q |
201 |
gtttatattattactaaatgtttttaatgtgtccctttt |
239 |
Q |
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| T |
48707999 |
gtttatattattactaaatgtttttaatgtgtccctttt |
48708037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 48707377 - 48707483
Alignment:
| Q |
1 |
cttctttgaatctgaagagttcatgccatgaaaaattcttgtttaagggaagaagcagaagaaaatatttgcatctgaaaagttcataccattaacaaga |
100 |
Q |
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| T |
48707377 |
cttcttttaatctgaagagttcatgccatgaaaaattcttgtttaggagaagaagcagaagaaaatatttgcatctgaaaagttcataccattaacaaga |
48707476 |
T |
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| Q |
101 |
aaagtct |
107 |
Q |
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| T |
48707477 |
aaagtct |
48707483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13856718 - 13856581
Alignment:
| Q |
1 |
cttctttgaatctgaagagttcatgccatgaaaaattcttgtttaagggaagaagcagaagaaaatatttgcatctgaaaagttcataccattaacaaga |
100 |
Q |
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| T |
13856718 |
cttctttgaatctgaagaattcatgccatgaaaaatccttgtttcggataagaagcagaagaaaagatttgcatctgaaatgttcatgccatgaacaata |
13856619 |
T |
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| Q |
101 |
aaagtcttcaaacattcgttcaatcagagtagcaaggt |
138 |
Q |
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| T |
13856618 |
aaagtcttaaatcactcgttcaatcagagtagcaaggt |
13856581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 205
Target Start/End: Complemental strand, 16021795 - 16021641
Alignment:
| Q |
51 |
agaagcagaagaaaatatttgcatctgaaaagttcataccattaacaagaaaagtcttcaaacattcgttcaatcagagtagcaaggttgccacaaattg |
150 |
Q |
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||||||||||||||| ||||||||||| ||||||| | || ||||| |||| |||||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
16021795 |
agaagcagaagaaaagcattgcatctgaagagttcatgctatgaacaacgaaagccttcaaacattcgttcaagcagagtagcaaggtt-ccgcaaattg |
16021697 |
T |
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| Q |
151 |
ttttccttcacatgagagtgtacattctga-atggataagtattcgagattgttta |
205 |
Q |
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| T |
16021696 |
ttttccttcatgtgacagtgtacattctgagttgggtaagttttcgagattgttta |
16021641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 14391823 - 14391931
Alignment:
| Q |
101 |
aaagtcttcaaacattcgttcaatcagagtagcaaggttgccacaaattgttttccttcacatgagagtgtacattctga-atggataagtattcgagat |
199 |
Q |
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|||||||| ||||||||||||| |||||||||||||| || |||||||||||||| ||||||| |||||||||||||| ||| |||||||| |||| |
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| T |
14391823 |
aaagtcttaaaacattcgttcagctagagtagcaaggtt-ccgcaaattgttttcctgcacatgaaagtgtacattctgagttgggtaagtatttgagag |
14391921 |
T |
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| Q |
200 |
tgtttatatt |
209 |
Q |
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| T |
14391922 |
tgtttatatt |
14391931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 14398000 - 14398050
Alignment:
| Q |
89 |
ccattaacaagaaaagtcttcaaacattcgttcaatcagagtagcaaggtt |
139 |
Q |
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|||| |||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
14398000 |
ccatgaacaagaaaagttttcaaacatttgttcaatcagagtagcaaggtt |
14398050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 14395714 - 14395757
Alignment:
| Q |
96 |
caagaaaagtcttcaaacattcgttcaatcagagtagcaaggtt |
139 |
Q |
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|||||||||| |||||||||||||||||| |||||| ||||||| |
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| T |
14395714 |
caagaaaagttttcaaacattcgttcaataagagtaccaaggtt |
14395757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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