View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3019_2D_low_9 (Length: 237)
Name: NF3019_2D_low_9
Description: NF3019_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3019_2D_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 12155667 - 12155798
Alignment:
| Q |
16 |
acatcatatcggttagccttgtccttagctcaactcgtgtgaacccatcacacgagtcacggactagatttgttataagcttcaacgtccctttccttcg |
115 |
Q |
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| T |
12155667 |
acatcatatcggttagcctcgtccttagctcaactcgtgtaaacccatcacacgagtcgcggactagatttgttataagcttcaacgtccctttccttcg |
12155766 |
T |
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| Q |
116 |
tgtttctctgaaggagttgagacgttgcgttg |
147 |
Q |
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| T |
12155767 |
tgtttctctgaaggagttgagacgttgcgttg |
12155798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 19173795 - 19173702
Alignment:
| Q |
144 |
gttgttgataggcaagtccaaggaaggaccatcataaagcttatttatgggtgcatctcgtttcaacaaaactttagtatttagtcttcctctc |
237 |
Q |
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| T |
19173795 |
gttgttgataggcaagtccaaggaaggaccatcataaagcttatttatgtgtgcatctcgtttcaacaaaacttgagcatttagtcttcctctc |
19173702 |
T |
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