View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3021_high_10 (Length: 544)
Name: NF3021_high_10
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_10 |
 | |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 51455327 - 51455841
Alignment:
| Q |
18 |
ccttccacgattaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455327 |
ccttccacgattaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatc |
51455426 |
T |
|
| Q |
118 |
aacgaggaggaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaag |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51455427 |
aacgaggaggaggttgagttctctaagtatctgctgaaaggacttcttccacatttaagacggttggatgcagaacaaatgattgagaaggaaagagaag |
51455526 |
T |
|
| Q |
218 |
ccaagagacgaggtattcctgtatagtcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455527 |
ccaagagacgaggtattcctgtatagtcggagaaaatttgtagttttatatatttttcattttataatttgattttgggatgtgaattacagggctctca |
51455626 |
T |
|
| Q |
318 |
ctctcaaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnactta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
51455627 |
ctctcaaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaagactgatttggtatattaatcaatgc-tttttttactta |
51455725 |
T |
|
| Q |
418 |
ttctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttga |
517 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455726 |
ttctaatgctatatagttgttgacttcacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttga |
51455825 |
T |
|
| Q |
518 |
cctttgtctcctctgt |
533 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
51455826 |
cctttgtctcctctgt |
51455841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 415 - 529
Target Start/End: Complemental strand, 30206922 - 30206808
Alignment:
| Q |
415 |
ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt |
514 |
Q |
| |
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|||| ||||| |||||||| | |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30206922 |
ttatactaattctatatagttaatgacttaacactttttgtagtgacaactgcaaaacgtcaatatttgactaccacagaagctgtacaaaatgctcttt |
30206823 |
T |
|
| Q |
515 |
tgacctttgtctcct |
529 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
30206822 |
tgacatttgtctcct |
30206808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 415 - 526
Target Start/End: Original strand, 51480424 - 51480535
Alignment:
| Q |
415 |
ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt |
514 |
Q |
| |
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||||||| || |||||| ||| ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
51480424 |
ttattctgattctatattgctaatgatttaacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgtacagaatgctcttt |
51480523 |
T |
|
| Q |
515 |
tgacctttgtct |
526 |
Q |
| |
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| || ||||||| |
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|
| T |
51480524 |
taacatttgtct |
51480535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 445 - 529
Target Start/End: Original strand, 51497310 - 51497394
Alignment:
| Q |
445 |
acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcct |
529 |
Q |
| |
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||||||| |||||||| | ||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||| |
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| T |
51497310 |
acactttctgtagtgacatctgcaaaacctcaatattcgactaccacagaagctgtacaaaatgttcttttgacatttgtctcct |
51497394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 51479949 - 51480038
Alignment:
| Q |
143 |
agtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggta |
232 |
Q |
| |
|
||||| || |||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| | |||||| ||||||| ||||| |
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| T |
51479949 |
agtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaaggta |
51480038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 30207408 - 30207301
Alignment:
| Q |
127 |
gaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac |
226 |
Q |
| |
|
||||||||| |||| ||||| || ||||| ||||||||| ||||||||| |||||||||||||||||| |||||||| | |||||| ||||||| |
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|
| T |
30207408 |
gaggttgagctctccaagtatatgttgaaaatacttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagatagaagcaaagagac |
30207309 |
T |
|
| Q |
227 |
gaggtatt |
234 |
Q |
| |
|
||||||| |
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|
| T |
30207308 |
aaggtatt |
30207301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 51496994 - 51497078
Alignment:
| Q |
149 |
tgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggtat |
233 |
Q |
| |
|
||||||||| |||| ||||| ||||||| || ||||||||||| |||||| ||||||||| | |||||| |||| || |||||| |
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| T |
51496994 |
tgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtat |
51497078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 376
Target Start/End: Original strand, 51480269 - 51480387
Alignment:
| Q |
258 |
tagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggcggattattctaaag |
357 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||| | ||| |||||||||||| || |||||||| ||||| || ||||| ||||| |
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| T |
51480269 |
tagtttcatatattttccaatttataatttgcttttgggacgaacattgcagggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaa |
51480368 |
T |
|
| Q |
358 |
atgagcgtgtgttctggta |
376 |
Q |
| |
|
|| ||||||||| |||||| |
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|
| T |
51480369 |
ataagcgtgtgtactggta |
51480387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 27 - 533
Target Start/End: Original strand, 43160261 - 43160774
Alignment:
| Q |
27 |
attaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggag |
126 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||| || | | ||| |
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|
| T |
43160261 |
attaactattcttatgatttttctgtattgtatatttgaaatgtatccatctggtttactataggaaatgaagcataaggtcgaaaccaacagcaatgag |
43160360 |
T |
|
| Q |
127 |
gaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac |
226 |
Q |
| |
|
|| ||||||||||| || || | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |
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|
| T |
43160361 |
gaagttgagttctcgaagaatattctgaaaggacttcttccacatttaagagggttggatgaagaacaaatgatttagaaggaaagagaagccaagatac |
43160460 |
T |
|
| Q |
227 |
gaggtattcctgtatagtcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattacagg----gctctcactctc |
322 |
Q |
| |
|
|||||||||| ||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43160461 |
aaggtattcctttatagtcagagatcatttttagttttatatatttttcattttataatttgattttgggatgtgaattacaggcctctctctcactctc |
43160560 |
T |
|
| Q |
323 |
aaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnacttattcta |
422 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
43160561 |
aatgctaaatataaaaccggcggattattctaaagatgcgcgtgtgttctggtaaggactgatttggtatattaatcaatg-ttttctttactta-tcta |
43160658 |
T |
|
| Q |
423 |
atgctatatag-----ctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttga |
517 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||| | |
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|
| T |
43160659 |
atgctttatagtgacaatgttggcttcacactttttatagtgacaactgcaaaacatcaatatttgactaccgcagaagctgcacaaaatgcccttttaa |
43160758 |
T |
|
| Q |
518 |
cctttgtctcctctgt |
533 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43160759 |
cctttgtctcctctgt |
43160774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 27396465 - 27396548
Alignment:
| Q |
450 |
ttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt |
533 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||||||||| || |||| || ||||||||||||||||||||| |
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|
| T |
27396465 |
ttttgtagcgacaactgcaaaacatcaatatttgattaccacagaagctgcacagaatgttcctttgacctttgtctcctctgt |
27396548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 526
Target Start/End: Complemental strand, 20868751 - 20868672
Alignment:
| Q |
447 |
actttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct |
526 |
Q |
| |
|
|||||||||||||| |||||| | | || ||||||||||||||| |||| ||| ||||||||||||||||||||||||| |
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|
| T |
20868751 |
actttttgtagtgacaactgccagagctcgatatttgactaccaccgaagttgtgcaaaatgctcttttgacctttgtct |
20868672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 27395958 - 27396047
Alignment:
| Q |
133 |
gagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaag |
222 |
Q |
| |
|
|||||||| ||||| |||| |||| |||||||||||||||| ||| |||||| ||||||||||| |||||||| | |||||||||| |
|
|
| T |
27395958 |
gagttctccaagtatatgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggccgagaaggagatagaagccaag |
27396047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 448 - 526
Target Start/End: Complemental strand, 137431 - 137353
Alignment:
| Q |
448 |
ctttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct |
526 |
Q |
| |
|
||||||||||||| |||||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
137431 |
ctttttgtagtgacaactgccaaagcttaatatttgactaccacagaagctgtacaaaatgctcttttgacctttgtct |
137353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 526
Target Start/End: Original strand, 18085553 - 18085634
Alignment:
| Q |
445 |
acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct |
526 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | ||||||||||| || ||||||| |
|
|
| T |
18085553 |
acactttttgtagtgacaactgcaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtct |
18085634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 18079591 - 18079673
Alignment:
| Q |
143 |
agtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac |
226 |
Q |
| |
|
||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| | || ||| ||||||| |
|
|
| T |
18079591 |
agtatatgctgaaag-acttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggatatagcagcaaagagac |
18079673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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