View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_high_11 (Length: 462)
Name: NF3021_high_11
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 35222238 - 35221799
Alignment:
| Q |
1 |
ttatggagtcaaaatttgcacaaatgctcctatagtctcccatctgctgtttgcggatgattgctttctcttttttagagtagagcctgctgaagcgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
35222238 |
ttatggagtcaaaatttgcacaaatgctcctatagtctcccatctgctgtttacggatgattgctttctcttttttagagcagagcctgctgaagcgaca |
35222139 |
T |
|
| Q |
101 |
attatgaaaaatattctagcattttatgagaaagcttcgggacaagcaatcaattttcaaaaatcagagattttcttcagcaggaacgtttgtcagacaa |
200 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
35222138 |
attacaaaaaatattctagcagtttatgagaaagcttcgggacaagtaatcaattttcaaaaatcagagattttcttcagcaggaatgtttgtcagacaa |
35222039 |
T |
|
| Q |
201 |
agcaaactgatatcacaaacattcttgaggtacaagttgttcttggcactggaaagtatttgggattaccatctatgatcggaaggagcaaaaaagcgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35222038 |
agcaaactgatatcacaaacattcttgaggtacaagttgttcttggcactgggaagtatttgggattaccatctatgatcggaaggagcaaaaaagcgac |
35221939 |
T |
|
| Q |
301 |
gtttaattttatcaaggatcgta-ttggaaaatgatcaattcatggggcagcaagtgtctatcaaaagcttggcgtgaggtacttatcaaattagtttta |
399 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
35221938 |
gtttaattttatcaaggatcgtatttggaaaaggatcaattcatggggcagcaagtgtctatcaaaagttgggcgtgaggtacttatcaaattagtttta |
35221839 |
T |
|
| Q |
400 |
cagtctattccaacatactttatgagcatttttacccttc |
439 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
35221838 |
cagtttattccaacatactttatgagcatttttacccttc |
35221799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 443
Target Start/End: Original strand, 5580180 - 5580412
Alignment:
| Q |
212 |
atcacaaacattcttgaggtacaagttgttcttggcactggaaagtatttgggattaccatctatgatcggaaggagcaaaaaagcgacgtttaatttta |
311 |
Q |
| |
|
|||||||| |||||| | || |||| |||||||||||| | ||| || ||||| ||||| |||||||| ||||| || |||||||||||||| ||||| | |
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|
| T |
5580180 |
atcacaaatattcttcaagttcaagctgttcttggcaccgaaaaatacttgggcttaccttctatgattggaagaagtaaaaaagcgacgttcaatttca |
5580279 |
T |
|
| Q |
312 |
tcaaggatcgta-ttggaaaatgatcaattcatggggcagcaagtgtctatcaaaagcttggcgtgaggtacttatcaaattagttttacagtctattcc |
410 |
Q |
| |
|
|||| ||||| | |||||| | || || |||||| |||| || ||| | ||||| || | ||||| |||||||||||| ||| | || ||||| || |
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|
| T |
5580280 |
tcaaagatcgcatttggaagaaaattaactcatggagcagtaaatgtttgtcaaaggcaggacgtgaaatacttatcaaatcagtgcttcaatctatacc |
5580379 |
T |
|
| Q |
411 |
aacatactttatgagcatttttacccttcctac |
443 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||| |
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|
| T |
5580380 |
tacatattttatgagtattttcaccctccctac |
5580412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 19935815 - 19935637
Alignment:
| Q |
143 |
caagcaatcaattttcaaaaatcagagattttcttcagcaggaacgtttgtcagacaaagcaaactgatatcacaaacattcttgaggtacaagttgttc |
242 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||| ||||||||||| | | || | |||||| | | ||| |||| |||||| | || |||| ||||| |
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|
| T |
19935815 |
caagctatcaattaccaaaaatcagaaatttttttcagcaggaatggatcacaatctaagcaacttaacatcccaaatattcttcaagttcaagctgttc |
19935716 |
T |
|
| Q |
243 |
ttggcactggaaagtatttgggattaccatctatgatcggaaggagcaaaaaagcgacgtttaattttatcaaggatcg |
321 |
Q |
| |
|
||||||| ||||| || ||||| ||||| ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| |
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|
| T |
19935715 |
ttggcaccggaaaatacttgggcttaccttctatgactggaagaagtaaaaaagcgacgttcaatttcatcaaagatcg |
19935637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 325
Target Start/End: Complemental strand, 24450137 - 24450013
Alignment:
| Q |
201 |
agcaaactgatatcacaaacattcttgaggtacaagttgttcttggcactggaaagtatttgggattaccatctatgatcggaaggagcaaaaaagcgac |
300 |
Q |
| |
|
|||||| | |||| |||||||||||||| || | |||||||| ||||| || || ||| | || || || || ||||| ||||| |||||| ||||||| |
|
|
| T |
24450137 |
agcaaaataatattacaaacattcttgatctataggttgttctcggcacggggaaatatcttggtttgccttcaatgattggaagaagcaaacaagcgac |
24450038 |
T |
|
| Q |
301 |
gtttaattttatcaaggatcgtatt |
325 |
Q |
| |
|
|| |||||||| |||||| ||||| |
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|
| T |
24450037 |
tttcaattttattaaggattgtatt |
24450013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 345
Target Start/End: Complemental strand, 16937681 - 16937580
Alignment:
| Q |
245 |
ggcactggaaagtatttgggattaccatctatgatcggaaggagcaaaaaagcgacgtttaattttatcaaggatcgtat-tggaaaatgatcaattcat |
343 |
Q |
| |
|
||||| ||||||||||| ||| | ||| | ||||| || || |||||||||||||| ||||| ||| ||||||||||||| ||||| | ||||||||||| |
|
|
| T |
16937681 |
ggcacgggaaagtatttaggacttccaccaatgattggcagaagcaaaaaagcgacttttaagtttgtcaaggatcgtatatggaacaagatcaattcat |
16937582 |
T |
|
| Q |
344 |
gg |
345 |
Q |
| |
|
|| |
|
|
| T |
16937581 |
gg |
16937580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 345
Target Start/End: Original strand, 14584161 - 14584262
Alignment:
| Q |
245 |
ggcactggaaagtatttgggattaccatctatgatcggaaggagcaaaaaagcgacgtttaattttatcaaggatcgtat-tggaaaatgatcaattcat |
343 |
Q |
| |
|
||||| ||||||||| | ||| | ||||||||||| || |||||||| ||| |||| ||||| ||| | ||||||| ||| ||||| ||||| ||||||| |
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|
| T |
14584161 |
ggcacaggaaagtatctaggacttccatctatgattggcaggagcaacaaaacgacttttaagtttgttaaggatcatatatggaacatgattaattcat |
14584260 |
T |
|
| Q |
344 |
gg |
345 |
Q |
| |
|
|| |
|
|
| T |
14584261 |
gg |
14584262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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