View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3021_high_12 (Length: 452)
Name: NF3021_high_12
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_12 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 4 - 452
Target Start/End: Original strand, 54382994 - 54383444
Alignment:
| Q |
4 |
cgagtgagaagaatgcacataaaacagctaaagaggaggaacttagaagcatgcattaaattcaatgattaacaatgttaataatgatataaaagcattt |
103 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54382994 |
cgagtgtgaagaatgcacataaaacagctaaagaggaggaacttagaagcatgcattaaattcaatgattaacaatgttaataatgatataaaagcattt |
54383093 |
T |
|
| Q |
104 |
aagaatgcatgcaaactcacgattaacaatagcataatatgaaagcatttaagcaggcatgcaaagtgagtactcacgattaacaagagcatggcaaatg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54383094 |
aagaatgcatgcaaactcacgattaacaagagcataatatgaaagcatttaagcaggcatgcaaagtgagtactcacgattaacaagagcatgacaaatg |
54383193 |
T |
|
| Q |
204 |
tgaggagagaaagaacaactctgcgttccatatctttctgctatattaagtgtgggaaagctgttttactgcgaaagatgcactgaagtggaagtgagct |
303 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54383194 |
tgaggagagaaagaacaaccctgcgttccatatctttctgctatattaagtgtgggaaagctgttttactgcgaaagatgcactgaagtggaagtgagct |
54383293 |
T |
|
| Q |
304 |
tagctttttgtaagcgaaagattaagaaaagtacaagtgatgagctcattaagcttaggtgaactcacaagtttttctagaagtcacttaattgaaaatt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54383294 |
tagctttttgtaagcgaaagattaagaaaagtacaagtgatgagctcattaagcttaggtgaattcacaagtttttctagaagtcacttaattgaaaatt |
54383393 |
T |
|
| Q |
404 |
aactcttcatctttggtgatttgggttcgagatcg--acactgtaaaaaga |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54383394 |
aactcttcatctttggtgatttgggttcgagatcgacacactgtaaaaaga |
54383444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 54399122 - 54399252
Alignment:
| Q |
175 |
actcacgattaacaagagcatggcaaatgtgaggagagaaagaacaactctgcgttccatatctttctgctata--ttaagtgtgggaaagctgttttac |
272 |
Q |
| |
|
|||||||||||||||||||| | |||| | |||||||| |||||||| || || ||||||||| |||||| |||| | ||||||| ||||||||| |
|
|
| T |
54399122 |
actcacgattaacaagagcaggacaaaaggaaggagagaccgaacaactttgtgtgtcatatctttgagctatactttaattatgggaaaactgttttac |
54399221 |
T |
|
| Q |
273 |
tgcgaaagatgcactgaagtggaagtgagct |
303 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
54399222 |
tgcgaaagatgctttgaagtggaagtgagct |
54399252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University