View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_high_13 (Length: 452)
Name: NF3021_high_13
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_13 |
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| [»] scaffold0392 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0392 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 243 - 452
Target Start/End: Original strand, 14464 - 14673
Alignment:
| Q |
243 |
taattgatcttgttcttgacacaattgacaaaaacattattacattcaacactttgttacagcctaacacctctataaatttcatttatctcgtgaggac |
342 |
Q |
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| T |
14464 |
taattgatcttgttcttgacacaattgacaaaaacattattacattcaacactttgttacagcctaacacctctataaatttcatttatctcttgaggac |
14563 |
T |
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| Q |
343 |
tatttccacctctaatttcttgattattagtattaattttatcaacttctaactctctatacctatgcaagtaccttctcattggctcagcataatcatc |
442 |
Q |
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| T |
14564 |
tatttccacctctaatttcttgattattagtattaattttatcaacttctaactctctatacctatgcaagtaccttctcattggctcagcataatcatc |
14663 |
T |
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| Q |
443 |
aaaaccaagt |
452 |
Q |
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| T |
14664 |
aaaaccaagt |
14673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 14233 - 14419
Alignment:
| Q |
18 |
atgaattatctcataaacatgcaataatatttacaatgtacatagcgatattatatgtaatatttttattttatttgaaggtgatccagataatgaatag |
117 |
Q |
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| T |
14233 |
atgaattatctcgtaaacatgcaataatatttacaatgtacatagcgatattatatgtaatatttttattttatttgaaggtgatccagataatgaatag |
14332 |
T |
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| Q |
118 |
gtctaaatgggaagattgaacattaaacactgaattctacaaaagtacatggccagtaattaaatattctcaaattcaagagatcaac |
205 |
Q |
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| T |
14333 |
gtctaaat-ggaagattgaacattaaacactgaattctacaaaagtacatggccagtaattaaatattctcaaattcaagagatcaac |
14419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 49536584 - 49536646
Alignment:
| Q |
390 |
tctaactctctatacctatgcaagtaccttctcattggctcagcataatcatcaaaaccaagt |
452 |
Q |
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| T |
49536584 |
tctaattctctatatctatgcaaataccttctcattggttcagcataatcatcaaaaccaagt |
49536646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 38176901 - 38176962
Alignment:
| Q |
391 |
ctaactctctatacctatgcaagtaccttctcattggctcagcataatcatcaaaaccaagt |
452 |
Q |
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| T |
38176901 |
ctaattctctatatctatgcaaataccttctcattggttaagcataatcatcaaaaccaagt |
38176962 |
T |
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