View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_high_22 (Length: 358)

Name: NF3021_high_22
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_high_22
NF3021_high_22
[»] chr1 (1 HSPs)
chr1 (18-313)||(30945898-30946190)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 30946190 - 30945898
Alignment:
Q  18 actaaccttctagaattcatcatatctcaccaccaccagatcacggattctgcaactgtttactcgatcgtgattcctaatcaaatacaaaaattaatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946190 actaaccttctagaattcatcatatctcaccaccaccagatcacggattctgcaactgtttactcgatcgtgattcctaatcaaatacaaaaattaatta 30946091  T
Q  118 attaatgaatagaaaagagtaagaaaatgaatcgagattagtagatctgaagaaatgaaactgaagaagattcgagaaggtacgctaacgaacctgttgt 217  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30946090 atgaatgaatagaaaatagtaagaaaatgaatcgagattagtagatctgaagaaatgaaactgaagaagattcgagaaggtacgcgaacgaacctgttgt 30945991  T
Q  218 tctgtatgtaagtaaaggttctttggaagagatatagaaagaggtttgtttgtttatataagatgcgagctaccttcaccagttttacactacact 313  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  30945990 tctgtatgtaagtaaatgttctttggaagaaatatagaaagaggtttgtttgtttatataagatgcgagct---ggcaccagttttacactacact 30945898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University