View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_high_30 (Length: 319)
Name: NF3021_high_30
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31385141 - 31385246
Alignment:
| Q |
1 |
aattgagtgttttccacattcgtatccgtaaatatggaagttatattcaaaagaagaataaatgtagtttatgggttatcttgttatgtcaataagctag |
100 |
Q |
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| T |
31385141 |
aattgagtgttttccacattcgtattcgtaaatatggaagttatattcaaaagaagaataaatgtagtttatgggttatctttttatgtcaataagctag |
31385240 |
T |
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| Q |
101 |
ttaagg |
106 |
Q |
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|||||| |
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| T |
31385241 |
ttaagg |
31385246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 31385280 - 31385408
Alignment:
| Q |
146 |
aaccttgtttgaagccctttggtcgtaaaggtgggtgataagtgaccgatatataggaccgtcttgaaaatatgtaagaaacttgatcttaattgggact |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31385280 |
aaccttgtttgaagccctttggtcgtaaaggtgggtgataagtgatcgata----ggaccgtcttgaaaatatgtaagaaacttgaccttaattgggact |
31385375 |
T |
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| Q |
246 |
tatcggtagaaccaaaattatcaaacaaagtac |
278 |
Q |
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| T |
31385376 |
tgccagtagaaccaaaattatcaaacaaagtac |
31385408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 35374779 - 35374848
Alignment:
| Q |
207 |
tcttgaaaatatgtaagaaacttgatcttaattgggacttatcggtagaaccaaaattatcaaacaaagt |
276 |
Q |
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| T |
35374779 |
tcttgaaaacaggcaagaaacttgaccctaaatacgacctatcggtagaatcaaaattatcaaacaaagt |
35374848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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