View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_high_31 (Length: 307)

Name: NF3021_high_31
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_high_31
NF3021_high_31
[»] chr4 (5 HSPs)
chr4 (15-302)||(51211479-51211762)
chr4 (137-295)||(51197960-51198118)
chr4 (137-296)||(51155444-51155603)
chr4 (142-296)||(51144304-51144458)
chr4 (137-296)||(29938480-29938639)
[»] chr3 (2 HSPs)
chr3 (15-296)||(49738410-49738689)
chr3 (143-268)||(36284720-36284848)
[»] chr1 (2 HSPs)
chr1 (139-292)||(38527178-38527331)
chr1 (138-292)||(38568478-38568632)
[»] chr2 (2 HSPs)
chr2 (145-211)||(5821153-5821219)
chr2 (142-198)||(5764242-5764298)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 51211762 - 51211479
Alignment:
Q  15 aaaaacatgacacatattgtatgaattttcctacctgcagaacatatatatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51211762 aaaaacatgacacatattgtatgaattttcctacctgcagaacatat----ccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatc 51211667  T
Q  115 atggttagatcaaatgatgctgcattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51211666 atggttagatcaaatgatgctgcattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatt 51211567  T
Q  215 tgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcctctgtg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51211566 tgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtg 51211479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 137 - 295
Target Start/End: Complemental strand, 51198118 - 51197960
Alignment:
Q  137 cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg 236  Q
    |||| ||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| |||| |||||||| |||||||||||     
T  51198118 cattaataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactc 51198019  T
Q  237 atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctc 295  Q
    | ||||||||| ||||||| || |||||||||    || ||||||||||||||||||||    
T  51198018 acatcttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctc 51197960  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 137 - 296
Target Start/End: Complemental strand, 51155603 - 51155444
Alignment:
Q  137 cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg 236  Q
    |||| ||||||| || |||||||| |||| ||| |||| ||||||||||||||| |||||||||||||| ||| |||| |||||||| |||||||| ||     
T  51155603 cattgataccttctcccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctc 51155504  T
Q  237 atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc 296  Q
    | ||||||||| ||||||| ||| ||||||||  | || |||||||||  ||||||||||    
T  51155503 acatcttgcctcaaaattgttttaaggtataaccctctaattcttgcactctgtctctcc 51155444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 51144458 - 51144304
Alignment:
Q  142 ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatc 241  Q
    ||||||| || |||||||| || | ||||||||| ||||||||||||||||||||||||||||| ||  |||| |||||||| ||||||||||| | |||    
T  51144458 ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc 51144359  T
Q  242 ttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc 296  Q
    |||||| ||||||| ||| || |||||  | || |||||||||  ||||||||||    
T  51144358 ttgcctcaaaattgttttaagatataaccctctaattcttgcactctgtctctcc 51144304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 296
Target Start/End: Original strand, 29938480 - 29938639
Alignment:
Q  137 cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg 236  Q
    |||| ||||||| || |||||||| |||| ||||||||| || ||||||| ||| |||||||||||||| ||| | || ||||| || ||||| || ||     
T  29938480 cattgataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctc 29938579  T
Q  237 atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc 296  Q
    | ||||||||| ||||||| ||| ||||||||  | || |||||||||  ||||||||||    
T  29938580 acatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctcc 29938639  T

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Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 49738410 - 49738689
Alignment:
Q  15 aaaaacatgacacatattgtatgaattttcctacctgcagaacatatatatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatc 114  Q
    ||||| |||||||||| |||||||||||||||||||| |||| ||||    |  |||||||||||||||| || ||||||   | |  ||  ||||||||    
T  49738410 aaaaagatgacacatactgtatgaattttcctacctg-agaagatat----cacccaaaaaaggaagaataagctattat---ccttaaaacttgttatc 49738501  T
Q  115 atggttagatcaaatgatgctgcattcata------ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcacc 208  Q
    || |||||||||||||||  |||||| |||      |||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |    
T  49738502 atagttagatcaaatgattatgcattaatagaaataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaacaacctcaac 49738601  T
Q  209 actatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc 296  Q
    ||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  49738602 actgtttgtttccctgtcaaagaagcttatatcttgccttaaaattgctttgaggtataaggcccgtattcttgcagcttgtctctcc 49738689  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 36284848 - 36284720
Alignment:
Q  143 taccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgt---ttccttgtcaaagaaactgata 239  Q
    |||||| || ||||| || ||||||||||||| ||| |||| |||||| |||||||||||||| ||| |||| ||   |||| |||||||||| ||  ||    
T  36284848 taccttctcacccattgcatcttgaataagaattgtgtcacttgacatccttccaacaacctcgccagtattagtttcttccatgtcaaagaagctcgta 36284749  T
Q  240 tcttgccttaaaattgctttgaggtataa 268  Q
    |||||||| ||||||||| ||||||||||    
T  36284748 tcttgcctcaaaattgctctgaggtataa 36284720  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 38527178 - 38527331
Alignment:
Q  139 ttcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgat 238  Q
    |||||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || ||  | |||||||| || ||||||||| | |     
T  38527178 ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac 38527277  T
Q  239 atcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtct 292  Q
    |||||| ||||| |||| ||| |  || ||| | |||||||||||||| |||||    
T  38527278 atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtct 38527331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 292
Target Start/End: Original strand, 38568478 - 38568632
Alignment:
Q  138 attcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactga 237  Q
    ||||||||||| || |||||||| |||||||||||||| ||||||||||||||||| || | ||| || ||  | |||||||| || ||||||||| | |    
T  38568478 attcataccttctcacccatggcatcttgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaa 38568577  T
Q  238 tatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtct 292  Q
     |||||| ||||| |||| ||| |  || ||| | |||||||||||||| |||||    
T  38568578 catcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtct 38568632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 5821219 - 5821153
Alignment:
Q  145 ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccact 211  Q
    |||| ||||||||||| |||||||| ||||  |||||||| ||||||||||||| |||||| |||||    
T  5821219 ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccact 5821153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 5764298 - 5764242
Alignment:
Q  142 ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaa 198  Q
    ||||||| ||||||||||| |||||||| |||| ||| ||||| |||||||| ||||    
T  5764298 ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaa 5764242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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