View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_high_34 (Length: 300)
Name: NF3021_high_34
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 38671418 - 38671702
Alignment:
| Q |
14 |
atggtatggcaatataccttagcactctgcgattgtagatattagaagtatatggttcaaaacactcgttattgccaagaatttgactggtagatgcagt |
113 |
Q |
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| T |
38671418 |
atggtatggcaatataccttagcactctgcgattgtagatattagaagtatatggttcaaaacactcgttattgccaagaatttgactggtagatgcagt |
38671517 |
T |
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| Q |
114 |
tggcataggggcaacaagaagtgaattccgtacacctgtctttgatatcatctcccgaagtgcaccccaatcccacaaattggagggagtcacaccccac |
213 |
Q |
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| T |
38671518 |
tggcataggggcaacaagaagtgaattccgtacacctgtctttgatatcatctcccgaagtgcaccccaatcccacaaattggagggagtcacaccccac |
38671617 |
T |
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| Q |
214 |
atgtcaggctgaagaattccctgcacatatagataatcacctaagcaaccacaaacatcttggatctttagctacctatgattct |
298 |
Q |
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| T |
38671618 |
atgtcaggctgaagaattccctgcacatatagataatcacctaagcaaccacaaacatcttggatctttagctatctatgattct |
38671702 |
T |
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Back To:
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Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 2059877 - 2060073
Alignment:
| Q |
39 |
tctgcgattgtagatattagaagtatatggttcaaaacactcgttattgccaagaatttgactggtagatgcagttggcataggggcaacaagaagtgaa |
138 |
Q |
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| T |
2059877 |
tctgcgattgtagatattagaagtatatggttcaaaacactcgttattgccaagaatttgactggtagatgcagttggcataggggcaacaagaagtgaa |
2059976 |
T |
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| Q |
139 |
ttccgtacacctgtctttgatatcatctcccgaagtgcaccccaatcccacaaattggagggagtcacaccccacatgtcaggctgaagaattccct |
235 |
Q |
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| T |
2059977 |
ttccgtacacccgtctttgatatcatctcccgaagtgcaccccaatcccacaaattggagggagtcacaccccacatgtcaggctgaagaattccct |
2060073 |
T |
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