View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_high_36 (Length: 294)

Name: NF3021_high_36
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_high_36
NF3021_high_36
[»] chr7 (25 HSPs)
chr7 (48-294)||(45959169-45959413)
chr7 (48-139)||(46331876-46331967)
chr7 (48-134)||(46043366-46043453)
chr7 (58-143)||(38198752-38198838)
chr7 (58-138)||(43084357-43084438)
chr7 (48-132)||(43830653-43830738)
chr7 (59-134)||(43831969-43832045)
chr7 (49-131)||(33624487-33624570)
chr7 (58-135)||(45957804-45957882)
chr7 (55-134)||(46044810-46044890)
chr7 (48-134)||(33625915-33626002)
chr7 (58-133)||(43083029-43083104)
chr7 (55-135)||(44168297-44168375)
chr7 (48-134)||(46330495-46330582)
chr7 (48-133)||(3496689-3496775)
chr7 (49-134)||(15131839-15131925)
chr7 (70-139)||(38873876-38873946)
chr7 (48-135)||(38875068-38875156)
chr7 (59-133)||(44166843-44166918)
chr7 (58-134)||(3495358-3495434)
chr7 (58-134)||(38200088-38200165)
chr7 (48-136)||(43308453-43308542)
chr7 (55-134)||(43309632-43309712)
chr7 (48-142)||(40303769-40303864)
chr7 (70-134)||(1065378-1065442)
[»] chr3 (29 HSPs)
chr3 (48-135)||(45234414-45234501)
chr3 (48-134)||(41786584-41786671)
chr3 (59-136)||(44558087-44558165)
chr3 (13-134)||(32942687-32942807)
chr3 (48-134)||(37180074-37180161)
chr3 (48-110)||(19669420-19669482)
chr3 (58-134)||(117952-118029)
chr3 (58-130)||(54185304-54185377)
chr3 (48-139)||(116617-116709)
chr3 (58-132)||(19831133-19831208)
chr3 (49-134)||(50614244-50614330)
chr3 (58-134)||(32944126-32944203)
chr3 (50-135)||(32146697-32146783)
chr3 (58-132)||(50615592-50615666)
chr3 (58-134)||(27867775-27867852)
chr3 (59-134)||(53244712-53244788)
chr3 (48-122)||(37178649-37178724)
chr3 (70-139)||(45387146-45387216)
chr3 (49-133)||(54185835-54185920)
chr3 (59-132)||(32148119-32148193)
chr3 (59-100)||(44555100-44555141)
chr3 (64-136)||(53246662-53246735)
chr3 (48-134)||(19825280-19825367)
chr3 (59-133)||(41926949-41927024)
chr3 (59-114)||(53439042-53439097)
chr3 (58-96)||(1430424-1430462)
chr3 (59-97)||(8576448-8576486)
chr3 (66-134)||(3670732-3670801)
chr3 (48-136)||(8574978-8575067)
[»] chr8 (30 HSPs)
chr8 (50-140)||(13324062-13324153)
chr8 (13-134)||(37707198-37707319)
chr8 (57-139)||(16472684-16472767)
chr8 (57-139)||(16477255-16477338)
chr8 (48-134)||(13322883-13322970)
chr8 (48-134)||(24451177-24451264)
chr8 (48-134)||(37705833-37705920)
chr8 (49-134)||(21575507-21575593)
chr8 (58-142)||(21136460-21136545)
chr8 (48-134)||(35368886-35368973)
chr8 (48-134)||(39338028-39338115)
chr8 (58-134)||(39336713-39336790)
chr8 (48-134)||(41280184-41280271)
chr8 (48-144)||(1692575-1692672)
chr8 (58-134)||(36062500-36062577)
chr8 (55-134)||(21135019-21135099)
chr8 (65-132)||(24452626-24452694)
chr8 (48-134)||(42816015-42816102)
chr8 (48-112)||(16478613-16478677)
chr8 (48-112)||(36063933-36063996)
chr8 (59-134)||(42817227-42817303)
chr8 (48-134)||(39308275-39308362)
chr8 (64-134)||(14840484-14840555)
chr8 (48-134)||(35864169-35864256)
chr8 (48-134)||(39310628-39310715)
chr8 (48-134)||(45021961-45022048)
chr8 (58-134)||(35370208-35370284)
chr8 (58-139)||(14835013-14835095)
chr8 (105-142)||(35778212-35778249)
chr8 (48-131)||(32243357-32243441)
[»] scaffold0003 (1 HSPs)
scaffold0003 (48-142)||(239198-239293)
[»] chr4 (26 HSPs)
chr4 (48-134)||(33688374-33688461)
chr4 (58-138)||(10322837-10322918)
chr4 (55-135)||(35061331-35061412)
chr4 (50-129)||(31316242-31316322)
chr4 (48-134)||(31318064-31318151)
chr4 (64-135)||(53570706-53570777)
chr4 (58-139)||(25423203-25423285)
chr4 (52-134)||(31470661-31470744)
chr4 (59-136)||(40171419-40171497)
chr4 (71-135)||(15562627-15562692)
chr4 (51-134)||(45046726-45046810)
chr4 (48-134)||(44208574-44208661)
chr4 (48-144)||(35054873-35054970)
chr4 (64-132)||(25421766-25421834)
chr4 (55-134)||(53572042-53572122)
chr4 (64-134)||(11669819-11669890)
chr4 (66-135)||(40170069-40170139)
chr4 (58-134)||(13086448-13086525)
chr4 (49-136)||(53568850-53568938)
chr4 (48-134)||(44209993-44210080)
chr4 (74-134)||(10321402-10321463)
chr4 (59-131)||(25244123-25244196)
chr4 (66-134)||(45045200-45045269)
chr4 (48-132)||(37329907-37329996)
chr4 (83-134)||(53569324-53569376)
chr4 (48-134)||(13508545-13508631)
[»] chr1 (25 HSPs)
chr1 (13-135)||(33708017-33708140)
chr1 (58-138)||(36248028-36248109)
chr1 (49-133)||(36368404-36368489)
chr1 (58-134)||(37987213-37987290)
chr1 (58-133)||(12368730-12368806)
chr1 (64-136)||(15053343-15053416)
chr1 (48-134)||(33709455-33709542)
chr1 (48-134)||(37985908-37985994)
chr1 (58-134)||(30981449-30981526)
chr1 (64-139)||(36249384-36249460)
chr1 (58-139)||(29232164-29232246)
chr1 (58-133)||(15054712-15054788)
chr1 (56-134)||(11999414-11999493)
chr1 (48-100)||(30982867-30982919)
chr1 (55-133)||(534129-534208)
chr1 (59-134)||(36362177-36362253)
chr1 (58-133)||(21794779-21794854)
chr1 (59-114)||(46595873-46595928)
chr1 (58-100)||(29231071-29231113)
chr1 (58-134)||(21795912-21795989)
chr1 (48-134)||(12251894-12251981)
chr1 (59-134)||(49768946-49769021)
chr1 (49-134)||(12898900-12898986)
chr1 (50-99)||(51338175-51338224)
chr1 (59-134)||(27550471-27550547)
[»] chr5 (22 HSPs)
chr5 (58-139)||(41138720-41138802)
chr5 (58-134)||(41140140-41140217)
chr5 (58-136)||(13921172-13921251)
chr5 (48-134)||(23318045-23318132)
chr5 (58-134)||(26866197-26866274)
chr5 (49-131)||(18951154-18951237)
chr5 (48-138)||(26864926-26865017)
chr5 (58-134)||(8217215-8217292)
chr5 (48-133)||(8218509-8218596)
chr5 (58-133)||(19116859-19116934)
chr5 (58-132)||(23312658-23312733)
chr5 (55-133)||(38693955-38694034)
chr5 (58-134)||(34527620-34527697)
chr5 (49-133)||(43439949-43440034)
chr5 (48-134)||(20898445-20898532)
chr5 (58-134)||(34526721-34526798)
chr5 (48-112)||(13919782-13919846)
chr5 (68-135)||(28381342-28381410)
chr5 (64-131)||(38691690-38691758)
chr5 (58-133)||(43441380-43441455)
chr5 (48-134)||(37811961-37812048)
chr5 (68-100)||(28381090-28381122)
[»] scaffold0651 (2 HSPs)
scaffold0651 (50-129)||(7375-7455)
scaffold0651 (48-134)||(5519-5606)
[»] chr6 (14 HSPs)
chr6 (48-139)||(15119350-15119442)
chr6 (58-140)||(7852241-7852324)
chr6 (48-134)||(22971592-22971679)
chr6 (48-134)||(23816719-23816806)
chr6 (48-136)||(17246590-17246679)
chr6 (48-134)||(7855398-7855485)
chr6 (58-132)||(5080027-5080101)
chr6 (48-131)||(3335678-3335761)
chr6 (58-132)||(22972305-22972380)
chr6 (58-132)||(23816018-23816093)
chr6 (48-139)||(289890-289981)
chr6 (49-135)||(21108597-21108684)
chr6 (59-97)||(5078733-5078771)
chr6 (48-112)||(8230922-8230986)
[»] scaffold0097 (3 HSPs)
scaffold0097 (58-140)||(25569-25652)
scaffold0097 (48-122)||(23384-23459)
scaffold0097 (70-138)||(24907-24976)
[»] scaffold0093 (1 HSPs)
scaffold0093 (52-134)||(49269-49352)
[»] chr2 (22 HSPs)
chr2 (58-140)||(20721740-20721823)
chr2 (58-139)||(23787314-23787396)
chr2 (70-134)||(3105939-3106004)
chr2 (58-138)||(44494019-44494100)
chr2 (59-134)||(1373721-1373796)
chr2 (48-138)||(20721057-20721148)
chr2 (48-133)||(33001371-33001457)
chr2 (48-140)||(1373257-1373350)
chr2 (50-134)||(44492580-44492665)
chr2 (48-122)||(20719546-20719621)
chr2 (48-134)||(21438995-21439082)
chr2 (70-134)||(18671973-18672038)
chr2 (58-139)||(18673331-18673414)
chr2 (49-132)||(42488178-42488262)
chr2 (58-132)||(33000674-33000747)
chr2 (58-131)||(42486757-42486828)
chr2 (64-135)||(43933259-43933331)
chr2 (48-133)||(43931840-43931926)
chr2 (59-131)||(3104693-3104766)
chr2 (58-132)||(9190056-9190131)
chr2 (48-124)||(38276051-38276128)
chr2 (59-139)||(30982933-30983013)
[»] scaffold0287 (1 HSPs)
scaffold0287 (48-133)||(230-316)
[»] scaffold0148 (2 HSPs)
scaffold0148 (65-134)||(34672-34742)
scaffold0148 (50-128)||(38891-38970)
[»] scaffold0005 (1 HSPs)
scaffold0005 (48-134)||(282611-282698)
[»] scaffold0385 (1 HSPs)
scaffold0385 (58-133)||(10469-10545)
[»] scaffold0026 (1 HSPs)
scaffold0026 (63-134)||(100958-101030)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 48 - 294
Target Start/End: Original strand, 45959169 - 45959413
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaacccaaaaataatttg 146  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45959169 cgttggagatcaaaattttaataaaatttaagtagagactaatgttggaaacgaacctatttatagagacctaaaacataattaacccaaaaataatttg 45959268  T
Q  147 cgacccaattatgtaaacacaacttttcatatattatataatacttaatttgacatcggtgatacaattactgattattcacctatcttatttccacata 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45959269 cgacccaattatgtaaacacaacttttcatatattatataatacttaatttgacatcggtgatacaattactgattattcacctatcctatttccacata 45959368  T
Q  247 agttttgctgcttgaaccaaatacttctttatcgttagtgtctgagct 294  Q
    |||||   | ||||||||||||||||||| ||||||||||||||||||    
T  45959369 agttt---ttcttgaaccaaatacttcttcatcgttagtgtctgagct 45959413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 46331876 - 46331967
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaacccaaaaa 139  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||||||||    
T  46331876 cgtttgagaccaaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatttacaggacctaaaatataattaacccaaaaa 46331967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 46043453 - 46043366
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||||    
T  46043453 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttggaaacgcgcatatttataggaacctaaaacataattaaccc 46043366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 38198838 - 38198752
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaataat 143  Q
    ||||| ||||||||||||||| ||||||||||||||||||||   |||||||||| ||||||||||||||||||||||| |||||||    
T  38198838 caaaaatttaataaaatttaaatagggactaatgttggaaacacgcctatttatagggacctaaaacataattaacccataaataat 38198752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 43084357 - 43084438
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaacccaaaa 138  Q
    ||||| |||||||||||||||||||| |||||||||||||||   ||||||||||| |||||||||||||||||||||||||    
T  43084357 caaaaatttaataaaatttaagtaggaactaatgttggaaacacgcctatttatagagacctaaaacataattaacccaaaa 43084438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 43830738 - 43830653
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaac 132  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| |||||||||||||    
T  43830738 cgttggggatcaaaaatttaataaaatttaagtagggactaatgttgaaaacgcacctatttataggggccttaaacataattaac 43830653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 43831969 - 43832045
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaaccc 134  Q
    |||| ||||||||||||||||||||||||||||||| |||||  ||||||||||| ||||| |||||||||||||||    
T  43831969 aaaaatttaataaaatttaagtagggactaatgttgaaaacgcgcctatttatagagaccttaaacataattaaccc 43832045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 33624570 - 33624487
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaa 131  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||  |||||  |||||||||| |||||||||||||||||||    
T  33624570 gttggggatcaaaaatttaataaaatttaagtaggaactaatgttaaaaacgcgcctatttatagggacctaaaacataattaa 33624487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 45957882 - 45957804
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccca 135  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||   |||||||||| |||||||||||||||||||||||    
T  45957882 caaaaatttaataaaatttaagtaggggctaatgttgaaaacacgcctatttatagggacctaaaacataattaaccca 45957804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 46044810 - 46044890
Alignment:
Q  55 gatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||   | ||||||| || ||||||||||||||||||||    
T  46044810 gatcaaaaatttaataaaatttaagtagggactaatgttgaaaacacgcttatttataagaacctaaaacataattaaccc 46044890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 33625915 - 33626002
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||||||||| ||||||| |||||||    ||||||||| ||||||||||||||||||||||    
T  33625915 cgttggggaccaaaaatttaataaaatttaagtaggaactaatgatggaaacacgtctatttatagggacctaaaacataattaaccc 33626002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 43083104 - 43083029
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaacc 133  Q
    ||||| ||||||||||||||||||| ||||||||||  ||||    ||||||||||||||||||||||||||||||    
T  43083104 caaaaatttaataaaatttaagtagagactaatgttaaaaacacgtctatttataggacctaaaacataattaacc 43083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 44168297 - 44168375
Alignment:
Q  55 gatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccca 135  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| |||||   ||||| | |||||||||||||||||||    
T  44168297 gatcaaaaatttaataaaatttaagtagggactaatgttgaaaacgcaccta---ataggaatctaaaacataattaaccca 44168375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 46330582 - 46330495
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||||||||||   |||||| ||| ||| ||||| ||||||||||||    
T  46330582 cgttggggataaaaaatttaataaaatttaagtagggactaatgttggaaacacgcctattcatatggaactaaatcataattaaccc 46330495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 3496689 - 3496775
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaacc 133  Q
    ||||||||| ||||| | ||||||||||||||||| | ||||||||| |||||  ||||||||| || |||||||||||||||||||    
T  3496689 cgttggagaccaaaaatataataaaatttaagtagaggctaatgttgaaaacgcgcctatttattggaacctaaaacataattaacc 3496775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 15131839 - 15131925
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    ||||| || ||||| |||||||||||||||||||| |||||||||| ||||   || |||||| |||||||||||||||||||||||    
T  15131839 gttggggaccaaaaatttaataaaatttaagtaggaactaatgttgaaaacacgccgatttataaggacctaaaacataattaaccc 15131925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 38873946 - 38873876
Alignment:
Q  70 aaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    ||||||||||||||||||||||||| ||| |  |||||||||| |||||| ||||||||||||||||||||    
T  38873946 aaaatttaagtagggactaatgttgaaaatgcgcctatttatagggaccttaaacataattaacccaaaaa 38873876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 38875068 - 38875156
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccca 135  Q
    |||||| || ||||| ||||||||||||||||||| |||||||||||||| |   | |||||||| |||||| ||||||||||||||||    
T  38875068 cgttggggaccaaaaatttaataaaatttaagtagagactaatgttggaagcacgcttatttatagggaccttaaacataattaaccca 38875156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 44166918 - 44166843
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctattta-taggacctaaaacataattaacc 133  Q
    |||| |||||||||||||||||||||| ||||||| ||||||  |||||||| ||| |||||||| ||||||||||    
T  44166918 aaaaatttaataaaatttaagtagggattaatgttagaaacgcgcctatttattagaacctaaaatataattaacc 44166843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 3495434 - 3495358
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    ||||| ||||||||||||||||||||||||||||||  |||||   |||||||| || ||||||||||||||||||||    
T  3495434 caaaaatttaataaaatttaagtagggactaatgtt-aaaacgcgtctatttataagcacctaaaacataattaaccc 3495358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 38200088 - 38200165
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    ||||| ||||||||||||||||||  ||||||||||| ||| || || |||||| ||||| |||||||||||||||||    
T  38200088 caaaaatttaataaaatttaagtaatgactaatgttgaaaatgagcccatttataaggacttaaaacataattaaccc 38200165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 43308542 - 43308453
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaacccaa 136  Q
    |||||| || ||||| ||||||||||||||||| |||||| |||||| ||||    |||||||| ||||||| |||||||||||||||||    
T  43308542 cgttggggaccaaaaatttaataaaatttaagttgggactgatgttgaaaacacgtctatttataaggaccttaaacataattaacccaa 43308453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 43309632 - 43309712
Alignment:
Q  55 gatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||||| ||||||||||||||||||| || |||||||| ||||   |||||||||| |||||| |||||| ||||||||    
T  43309632 gatcaaaaatttaataaaatttaagtagagattaatgttgaaaacacgcctatttatagggaccttaaacatgattaaccc 43309712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 40303864 - 40303769
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaacccaaaaataa 142  Q
    |||||| ||| |||| ||||||||||||||| ||||||| |||||||||| |   | ||||| |||| |||| ||||||||||||||||| |||||    
T  40303864 cgttggggatgaaaaatttaataaaatttaaatagggaccaatgttggaagcttgcttatttgtaggaaccttaaacataattaacccaataataa 40303769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 1065442 - 1065378
Alignment:
Q  70 aaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaaccc 134  Q
    ||||||||| ||| ||| ||||||| || |  || |||||||||||||| |||||||||||||||    
T  1065442 aaaatttaaatagagaccaatgttgaaagctcacttatttataggaccttaaacataattaaccc 1065378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 45234501 - 45234414
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaaccca 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45234501 cgttggggatcaaaaatttaataaaatttaagtagggactaatgttggaaacgcacctatttataggacctaaaacataattaaccca 45234414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 41786584 - 41786671
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| | ||| ||||||||||||||||||    
T  41786584 cgttggggatcaaaaatttaataaaatttaagtagggaataatgttggaaacaaacctatttacagggatctaaaacataattaaccc 41786671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 44558087 - 44558165
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaa 136  Q
    |||| |||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  44558087 aaaaatttaataaaatttaagtagggactaatgttggaaacgcgtctatttatagggacctaaaacataattaacccaa 44558165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 32942807 - 32942687
Alignment:
Q  13 aacagcgaggacctagttttctaacggnnnnnnnncgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata 112  Q
    ||||||||||||||| |||||||||||        |||||| |||||||| |||||||||||||||||||||||||||||| |||||   ||| ||||||    
T  32942807 aacagcgaggacctatttttctaacggaaaaaa--cgttggggatcaaaaatttaataaaatttaagtagggactaatgttagaaacatgcctctttata 32942710  T
Q  113 -ggacctaaaacataattaaccc 134  Q
     ||||||||||||||||||||||    
T  32942709 gggacctaaaacataattaaccc 32942687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 37180074 - 37180161
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||| ||||||||||    
T  37180074 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacgtaattaaccc 37180161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 19669482 - 19669420
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctattta 110  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||    
T  19669482 cgttggagatcaaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctattta 19669420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 117952 - 118029
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| ||||||||||||||||||| ||||||||||||||||   |||||||||| ||||||||||||||||||||||    
T  117952 caaaaatttaataaaatttaagtagagactaatgttggaaacacgcctatttatagggacctaaaacataattaaccc 118029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 54185377 - 54185304
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataatta 130  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||    
T  54185377 caaaaatttaataaaatttaagtaggaactaatgttggaaacgcgcctatttataaggacctaaaacataatta 54185304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 116709 - 116617
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||   | |||||||| |||||||||||||||||| || |||||    
T  116709 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttggaaacacgcttatttatagggacctaaaacataattatccaaaaaa 116617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 19831133 - 19831208
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaac 132  Q
    ||||| ||||||||||||||||||||||||||||||||||||  || |||||||| |||||| |||||||||||||    
T  19831133 caaaaatttaataaaatttaagtagggactaatgttggaaacacacttatttatagggaccttaaacataattaac 19831208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 50614330 - 50614244
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaaccc 134  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||| ||| ||||||||| |||||||    
T  50614330 gttggggaccaaaaatttaataaaatttaagtagggactaatgttgaaaacgcgcctatttatagagacttaaaacatatttaaccc 50614244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 32944126 - 32944203
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| ||||||||||||||||||| ||||||||||  |||||  |||||||||| ||||||||||||||||||||||    
T  32944126 caaaaatttaataaaatttaagtagagactaatgttaaaaacgtgcctatttatagggacctaaaacataattaaccc 32944203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 32146783 - 32146697
Alignment:
Q  50 ttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccca 135  Q
    |||| ||| |||| |||||||||||||||||| | ||||||||||||||    |||||||||| |||||||||||||||||||||||    
T  32146783 ttggggataaaaaatttaataaaatttaagtatgaactaatgttggaaatacgcctatttatatggacctaaaacataattaaccca 32146697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 50615592 - 50615666
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaac 132  Q
    ||||| ||||||| ||| |||||| ||||||||||| ||||||  |||||||||| |||||||||||||||||||    
T  50615592 caaaaatttaatagaatgtaagtaaggactaatgttagaaacgcgcctatttataagacctaaaacataattaac 50615666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 27867852 - 27867775
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| |||||||||||||||||| | |||||||||| ||||   |||||||||| ||||||||||||||||||||||    
T  27867852 caaaaatttaataaaatttaagtatgaactaatgttgaaaactcgcctatttatagggacctaaaacataattaaccc 27867775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 53244788 - 53244712
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||| |||| |||||||||||||||||||||||||| |||||  ||||||| || |||||| |||||||||||||||    
T  53244788 aaaaatttattaaaatttaagtagggactaatgttgaaaacgtgcctatttgtatggacctcaaacataattaaccc 53244712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 37178724 - 37178649
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaa 122  Q
    |||||| |||||||| |||||||||||||||||| ||| |||||||||||||   |||||||||| ||||||||||    
T  37178724 cgttggggatcaaaaatttaataaaatttaagtatggattaatgttggaaacacgcctatttatagggacctaaaa 37178649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 45387216 - 45387146
Alignment:
Q  70 aaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    |||||||||||| ||||||||||||||||||  |||||||||| |||| |||||| |||||||||| ||||    
T  45387216 aaaatttaagtatggactaatgttggaaacgcgcctatttatagggacgtaaaacctaattaaccctaaaa 45387146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 54185835 - 54185920
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaacc 133  Q
    ||||| |||||||| |||||||||||||||||| ||| |||||||| ||||   ||||||||| || || ||||||||||||||||    
T  54185835 gttggggatcaaaaatttaataaaatttaagtatggattaatgttgaaaacacgcctatttataagaacataaaacataattaacc 54185920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 32148119 - 32148193
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaac 132  Q
    |||| |||||||||||||||  ||| ||||||||||||||    |||||||||| ||||||||||||||||||||    
T  32148119 aaaaatttaataaaatttaaacaggaactaatgttggaaatacgcctatttatagggacctaaaacataattaac 32148193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 44555141 - 44555100
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacg 100  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  44555141 aaaaatttaataaaatttaagtagggactaatgttagaaacg 44555100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 53246662 - 53246735
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaa 136  Q
    |||| ||||||||||||||||| |||||||| ||||  || |||||||| |||||| |||||||||||| ||||    
T  53246662 tttattaaaatttaagtagggattaatgttgaaaacacacttatttatatggaccttaaacataattaatccaa 53246735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 19825367 - 19825280
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||| |||||||||||| ||||||||||||| ||    ||||||||| |||||| | |||||||||||||    
T  19825367 cgttggggaccaaaaatttaattaaatttaagtagagactaatgttggagacacgtctatttatagggaccttagacataattaaccc 19825280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 41927024 - 41926949
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacc 133  Q
    |||| ||||||||||||||| ||||||| |||||||||| |   | |||||||| |||||| ||||||||||||||    
T  41927024 aaaaatttaataaaatttaaatagggaccaatgttggaagctcgcttatttatagggaccttaaacataattaacc 41926949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 53439097 - 53439042
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg 114  Q
    |||| |||||||||||||||||||| ||||||||| |||||   ||||||||||||    
T  53439097 aaaaatttaataaaatttaagtaggaactaatgttagaaacacgcctatttatagg 53439042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 1430424 - 1430462
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttgga 96  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  1430424 caaaaatttaataaaatttaagtagggactgatgttgga 1430462  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 8576448 - 8576486
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaa 97  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  8576448 aaaaatttaataaaatttaaatagggactaatgttggaa 8576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 3670732 - 3670801
Alignment:
Q  66 taataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    ||||||||||||||||| ||  ||||||||||||    |||||||| ||||||| |||||||||||||||    
T  3670732 taataaaatttaagtagagatcaatgttggaaacacgtctatttataaggaccttaaacataattaaccc 3670801  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 8575067 - 8574978
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaa 136  Q
    |||||| ||| |||| ||||||||||||||| || |||  |||||||||| |  || ||||| || |||||| |||||||||||||||||    
T  8575067 cgttggggatgaaaaatttaataaaatttaaatatggatcaatgttggaagctcacttatttgtagggaccttaaacataattaacccaa 8574978  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 13324062 - 13324153
Alignment:
Q  50 ttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaat 140  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||    
T  13324062 ttggggatcaaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaaccctaaaat 13324153  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 37707198 - 37707319
Alignment:
Q  13 aacagcgaggacctagttttctaacggnnnnnnnncgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata 112  Q
    ||||||||||||||| |||||||||||        |||||| |||||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||    
T  37707198 aacagcgaggacctatttttctaacggaaaaaaa-cgttggggatcaaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctgtttata 37707296  T
Q  113 -ggacctaaaacataattaaccc 134  Q
     ||||||||||||||||||||||    
T  37707297 gggacctaaaacataattaaccc 37707319  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 16472767 - 16472684
Alignment:
Q  57 tcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||    
T  16472767 tcaaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaatataattaacccaaaaa 16472684  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 16477338 - 16477255
Alignment:
Q  57 tcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||    
T  16477338 tcaaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaatataattaacccaaaaa 16477255  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 13322970 - 13322883
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||    
T  13322970 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttggaaacatgcctatttatagggacctaaaacataattaaccc 13322883  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 24451264 - 24451177
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||| |||||||||||    
T  24451264 cgttggggatcaaaaatttaataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaatataattaaccc 24451177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 37705920 - 37705833
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  37705920 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttgaaaacgcgcctatttatagggacctaaaacataattaaccc 37705833  T

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Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 21575593 - 21575507
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||   |||||||| |||||||||||||||||||||||    
T  21575593 gttggggatcaaaaatttaataaaatttaagtaggaactaatgttggaaacgcgtctatttataaggacctaaaacataattaaccc 21575507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 21136460 - 21136545
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaataa 142  Q
    ||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||| || |||||||    
T  21136460 caaaaatttaataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacataattaatcctaaaataa 21136545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 35368973 - 35368886
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||| ||||   |||||||||||| ||||||||||||||||||||    
T  35368973 cgttggagataaaaaatttaataaaatttaagtaggtactaatgttgaaaacacgcctatttataggaacctaaaacataattaaccc 35368886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 39338028 - 39338115
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||| ||||||||||||||||||    
T  39338028 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttggaaacacgcctatttatagggatctaaaacataattaaccc 39338115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 39336790 - 39336713
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |  |||||||||| ||||||||||||||||||||||    
T  39336790 caaaaatttaataaaatttaagtagggtctaatgttggaaatgcgcctatttatagggacctaaaacataattaaccc 39336713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 41280271 - 41280184
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    ||||||||| ||||| ||||||||||||||||||   ||||||||||||||||  |||||||||||| | ||||||||||||||||||    
T  41280271 cgttggagaccaaaaatttaataaaatttaagtaaatactaatgttggaaacgcgcctatttataggaatctaaaacataattaaccc 41280184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 1692672 - 1692575
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaacccaaaaataatt 144  Q
    |||||| || ||||| ||||||||||||||||||||||||| ||||| ||||   ||||||||||| ||||||| ||||||||||||| ||| |||||    
T  1692672 cgttggggaccaaaaatttaataaaatttaagtagggactactgttgaaaacacgcctatttatagagacctaatacataattaaccctaaattaatt 1692575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 36062577 - 36062500
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||  ||||||||| |||||||||||||||||||||||    
T  36062577 caaaaatttaataaaatttaaatagagactaatgttgaaaacgcgcctatttataaggacctaaaacataattaaccc 36062500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 21135099 - 21135019
Alignment:
Q  55 gatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||   |||||||||| ||||| ||||||||||||||||    
T  21135099 gatcaaaaatttaataaaatttaagttgggactaatgttgaaaacacgcctatttatagggaccaaaaacataattaaccc 21135019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 24452626 - 24452694
Alignment:
Q  65 ttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaac 132  Q
    |||||||||||||||||||||||||||||||||||   |||||||||| |||| |||||||||||||||    
T  24452626 ttaataaaatttaagtagggactaatgttggaaacacgcctatttatagggacttaaaacataattaac 24452694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 42816102 - 42816015
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||||||||||||||||||||||| |   | |||||||| |||||| |||||||||||||||    
T  42816102 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttggaagcacgcgtatttatagggaccttaaacataattaaccc 42816015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 16478613 - 16478677
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata 112  Q
    ||||||||| ||| | |||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  16478613 cgttggagaccaataatttaataaaatttaagtagggactaatgttagaaacgcgcctatttata 16478677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 36063933 - 36063996
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata 112  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  36063933 cgttggggatcaaaaatttaataaaatttaagta-ggactaatgttggaaacgggcctatttata 36063996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 42817227 - 42817303
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||| ||| ||||||| ||||||||||||||||||||||||   |||||||||| |||||| |||||||||||||||    
T  42817227 aaaaatttcataaaatataagtagggactaatgttggaaacacgcctatttatagggaccttaaacataattaaccc 42817303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 39308362 - 39308275
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||||||||||||||| |||| ||||    ||||||||| |||||| |||||||||||||||    
T  39308362 cgttggggaccaaaaatttaataaaatttaagtagggactaaggttgaaaacacgtctatttatagggaccttaaacataattaaccc 39308275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 14840484 - 14840555
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    |||| |||||||| |||| ||||||||||||||||||  ||||||| | ||||||| |||||||||||||||    
T  14840484 tttattaaaattttagtaaggactaatgttggaaacgcgcctatttgtaaggaccttaaacataattaaccc 14840555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 35864169 - 35864256
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||||||||| |||||| ||  || |  ||||||||||| ||| ||||||||||||||||||    
T  35864169 cgttggcgaccaaaaatttaataaaatttaagtaggaactaatattaaaagcacacctatttatagggatctaaaacataattaaccc 35864256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 39310628 - 39310715
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| || ||||||||||||||||| | |||||||| |||||  ||||||| || |||||| |||||||||||||||    
T  39310628 cgttggggaccaaaaattaaataaaatttaagtaggaattaatgttgaaaacgtgcctatttctagggaccttaaacataattaaccc 39310715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 45022048 - 45021961
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||| | |||||||||| |||||| |  || |||||||| |||||| |||||||||||||||    
T  45022048 cgttggggaccaaaaatttaataaaatttaggaagggactaatattggaagcacacgtatttatagggacctgaaacataattaaccc 45021961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 35370208 - 35370284
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    ||||| ||||||||| |||| ||||| |||||||||| ||||   |||||||||||| ||||||||||||||||||||    
T  35370208 caaaaatttaataaa-tttatgtaggaactaatgttgaaaacacgcctatttatagggacctaaaacataattaaccc 35370284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 14835095 - 14835013
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    ||||| |||| ||||||||||||||||| |||| ||| ||||   | | |||||| |||||| ||||||||||||||||||||    
T  14835095 caaaaatttattaaaatttaagtagggattaatattgaaaacacgcttgtttataaggaccttaaacataattaacccaaaaa 14835013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 35778249 - 35778212
Alignment:
Q  105 tatttataggacctaaaacataattaacccaaaaataa 142  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  35778249 tatttataggaccaaaaacatatttaacccaaaaataa 35778212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 32243441 - 32243357
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaa 131  Q
    |||||| ||| |||| ||||||||||||||| ||||||| ||||||| || |   | ||||||||| ||||| ||||||||||||    
T  32243441 cgttggggatgaaaaatttaataaaatttaaatagggaccaatgttgaaagctcgcttatttatagagaccttaaacataattaa 32243357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 239293 - 239198
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaataa 142  Q
    |||||| || ||||| || ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||    
T  239293 cgttggggaccaaaaattgaataaaatttaggtagggactaatgttggaaacgcacctatttatagggacctaaaacataattaacccaagaataa 239198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 33688461 - 33688374
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  33688461 cgttggggaccaaaaatttaataaaatttaagtaggaactaatgttggaaacgcacctatttatagggacctaaaacataattaaccc 33688374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 10322837 - 10322918
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaa 138  Q
    ||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||    
T  10322837 caaaaatttaataaaatttaagtagggactaatgttggaaactcgcctatttatagggacctaaaacataattaacccaaaa 10322918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 35061331 - 35061412
Alignment:
Q  55 gatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccca 135  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||    
T  35061331 gatcaaaaatttaataaaatttaagtagggactaatgttgaaaacgcgcctatttatagggacctaaaacataattaaccca 35061412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 31316322 - 31316242
Alignment:
Q  50 ttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataatt 129  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  31316322 ttggagataaaaaatttaataaaatttaagtagggactaatgttggaaacgcacctatttataaggatctaaaacataatt 31316242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 31318064 - 31318151
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  31318064 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttagaaacgcgcctatttatagggacctaaaacataattaaccc 31318151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 53570777 - 53570706
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaaccca 135  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  53570777 tttaataaaatttaagtatggactaatgttaaaaacgaacctatttatagaacctaaaacataattaaccca 53570706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 25423203 - 25423285
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagga-cctaaaacataattaacccaaaaa 139  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||| ||||    
T  25423203 caaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatttataggatcctaaaacataattagccccaaaa 25423285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 31470744 - 31470661
Alignment:
Q  52 ggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| ||||   ||||||||| |||||||||||||||||||||||    
T  31470744 ggagaccaaaaatttaataaaatttaagtagggactaatgttgaaaacatgcctatttataaggacctaaaacataattaaccc 31470661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 40171419 - 40171497
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaacccaa 136  Q
    |||| ||||||||||||||||||| || |||||||||||||| |||||||||||| ||||| |||||||||||||||||    
T  40171419 aaaaatttaataaaatttaagtagagattaatgttggaaacgcacctatttatagagaccttaaacataattaacccaa 40171497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 15562692 - 15562627
Alignment:
Q  71 aaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccca 135  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  15562692 aaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaaccca 15562627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 45046726 - 45046810
Alignment:
Q  51 tggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||   ||||||||| |||||| ||| |||||||||||    
T  45046726 tggagaccaaaaatttaataaaatttaagtagggactaatgttggaaacgcgtctatttatagggaccttaaagataattaaccc 45046810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 44208661 - 44208574
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||| |||||   |||||||| | |||||||||||||||||||||    
T  44208661 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttgaaaacgcgtctatttataaagacctaaaacataattaaccc 44208574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 35054970 - 35054873
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaataatt 144  Q
    |||||| || ||||| |||||||||||||||||||| |||||||||| ||| |   ||||||||| ||||||||||||||||||||||  ||||||||    
T  35054970 cgttggggaccaaaaatttaataaaatttaagtaggaactaatgttgaaaatgcgtctatttatagggacctaaaacataattaacccttaaataatt 35054873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 25421834 - 25421766
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaac 132  Q
    |||||||||||||||||| |||||  ||||| ||| | |||||||||||||||||||||||||||||||    
T  25421834 tttaataaaatttaagtaaggactgttgttgaaaatgcacctatttataggacctaaaacataattaac 25421766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 53572042 - 53572122
Alignment:
Q  55 gatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    |||||||| ||||||||||||||||||| ||||||||||  ||||  ||||||||||||| |||||||| |||||||||||    
T  53572042 gatcaaaaatttaataaaatttaagtagagactaatgttaaaaacacacctatttataggaacctaaaatataattaaccc 53572122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 11669890 - 11669819
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||||||||||||| |||||||||||||||||||||  ||| |||||| |||||||||||| |||||||||    
T  11669890 tttaataaaatttaaatagggactaatgttggaaacgcgcctttttatagggacctaaaacacaattaaccc 11669819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 40170139 - 40170069
Alignment:
Q  66 taataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccca 135  Q
    ||||||||||||| || ||||||||||||||||| | ||||||| | ||||||||||||||||||||||||    
T  40170139 taataaaatttaaatatggactaatgttggaaacaagcctatttgtaaggacctaaaacataattaaccca 40170069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 13086448 - 13086525
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| |  |||||||||||| |||| |||||||||||||||    
T  13086448 caaaaatttaataaaatttaagttgggactaatgttgaaaatgcgcctatttataggaaccttaaacataattaaccc 13086525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 53568938 - 53568850
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaacccaa 136  Q
    ||||| || ||||| ||||||||||||||||||  || |||||||| ||||   |||||||||||| ||||||||||||||||||||||    
T  53568938 gttggggaccaaaaatttaataaaatttaagtaaagattaatgttgaaaacacgcctatttataggaacctaaaacataattaacccaa 53568850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 44209993 - 44210080
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| |||||||| ||||||||||||||||||  ||||||||||  |||||  |||||||||| |||| |||||||| ||||||||    
T  44209993 cgttggggatcaaaaatttaataaaatttaagtaaagactaatgttaaaaacgcgcctatttatagggacgtaaaacatgattaaccc 44210080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 10321463 - 10321402
Alignment:
Q  74 tttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||||||| ||||||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  10321463 tttaagtaggaactaatgttggaaacgcgcctatttatagggatctaaaacataattaaccc 10321402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 25244123 - 25244196
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaa 131  Q
    |||| ||||||||||||||| |||| | ||||||||||||||  |||||||||| ||||  |||||||||||||    
T  25244123 aaaaatttaataaaatttaaataggaattaatgttggaaacgcgcctatttatagggactcaaaacataattaa 25244196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 45045269 - 45045200
Alignment:
Q  66 taataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    ||||||||||||| ||||||||||||||||||| |  | |||||||||| || | |||||||||||||||    
T  45045269 taataaaatttaaatagggactaatgttggaaatgcgcatatttataggaactttaaacataattaaccc 45045200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 37329907 - 37329996
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaac----ctatttata-ggacctaaaacataattaac 132  Q
    |||||| || ||||| ||||| ||||| || |||||||||||||||||||||  ||    ||||||||| ||||||||||||||||||||    
T  37329907 cgttggggaccaaaaatttaacaaaatgtatgtagggactaatgttggaaacacacctatctatttatagggacctaaaacataattaac 37329996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 53569324 - 53569376
Alignment:
Q  83 ggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    ||||||||||||||||||  || ||||||||| ||||||||||||||||||||    
T  53569324 ggactaatgttggaaacgctccgatttatagggacctaaaacataattaaccc 53569376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 13508631 - 13508545
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaaccc 134  Q
    |||||| ||| |||| |||||| |||||| ||||||||| ||||||| || |   | ||||| |||||||| |||||||||||||||    
T  13508631 cgttggggatgaaaaatttaattaaattttagtagggaccaatgttgaaagctcgcttatttgtaggaccttaaacataattaaccc 13508545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 33708140 - 33708017
Alignment:
Q  13 aacagcgaggacctagttttctaacggnnnnnnnncgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata 112  Q
    ||||||||||||||| ||| |||||||        |||||| || ||||| |||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  33708140 aacagcgaggacctattttgctaacggaaaaaaaacgttggggaccaaaaatttaataaaatttaagtatggactaatgttggaaacgtgcctatttata 33708041  T
Q  113 gg-acctaaaacataattaaccca 135  Q
    || |||||||||||||||||||||    
T  33708040 ggaacctaaaacataattaaccca 33708017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 36248109 - 36248028
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaa 138  Q
    ||||| |||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||    
T  36248109 caaaaatttaataaaatttaagtagggactaatgttggaaacgcgtctatttatagggacctaaaacataattaacccaaaa 36248028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 36368404 - 36368489
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaacc 133  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||||||  ||||||||| ||||||||||||||||||||||    
T  36368404 gttggggatcaaaaatttaataaaatttaagtagggactaaggttggaaacgcgcctatttataaggacctaaaacataattaacc 36368489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 37987213 - 37987290
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  37987213 caaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaaccc 37987290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 12368730 - 12368806
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacc 133  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  12368730 caaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaacc 12368806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 15053416 - 15053343
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaa 136  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||    
T  15053416 tttaataaaatttaagtagggactaatgttgaaaacgcgcctatttatagggacctaaaacataattaacccaa 15053343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 33709455 - 33709542
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| |||||||| ||||||||||||||||||||||||||| || |||||   |||||||||| ||||||||||||||||||||||    
T  33709455 cgttggggatcaaaaatttaataaaatttaagtagggactaatattagaaacacgcctatttatagggacctaaaacataattaaccc 33709542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 37985994 - 37985908
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaaccc 134  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||    ||||||||| || ||||||||||||||||||    
T  37985994 cgttggagatcaaaaatttaataaaatttaaatagggactaatgttgcaaacacgtctatttataagatctaaaacataattaaccc 37985908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 30981526 - 30981449
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||| |||  ||||||||||||||||||||||    
T  30981526 caaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatatatcgggacctaaaacataattaaccc 30981449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 36249384 - 36249460
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaacccaaaaa 139  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||| || ||||||||||||||||| ||||    
T  36249384 tttaataaaatttaagtagggactaatgttgaaaacgcgcctatttataggaacttaaaacataattaaccctaaaa 36249460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 29232164 - 29232246
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    ||||| |||||||||||||||||||||| ||||||||||||    |||||||||| |||||||||||||||||||||| ||||    
T  29232164 caaaaatttaataaaatttaagtagggattaatgttggaaatacgcctatttatagggacctaaaacataattaacccgaaaa 29232246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 15054712 - 15054788
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacc 133  Q
    ||||| ||||||||||||| |||||| |||||||||||||||  ||||||||||| |||| ||||||||||||||||    
T  15054712 caaaaatttaataaaattttagtaggtactaatgttggaaacacacctatttatagggacttaaaacataattaacc 15054788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 11999493 - 11999414
Alignment:
Q  56 atcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaaccc 134  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||    |||||||||| |||||||||||||||||||||    
T  11999493 atcaaaattttaataaaatttaaatagggactaatgttaaaaacatgtctatttatagagacctaaaacataattaaccc 11999414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 30982867 - 30982919
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacg 100  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  30982867 cgttggggataaaaaatttaataaaatttaagtagggactaatgttggaaacg 30982919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 534129 - 534208
Alignment:
Q  55 gatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaacc 133  Q
    |||||||| ||||||||||||||| |||| |||||||||| ||||   ||||||||| | ||||||||||||||||||||    
T  534129 gatcaaaaatttaataaaatttaaataggaactaatgttgaaaacacgcctatttattgagacctaaaacataattaacc 534208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 36362253 - 36362177
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaaccc 134  Q
    |||| ||||||||||||||| | |||| |||||||||||||   ||||||||| || ||||||||||||||||||||    
T  36362253 aaaaatttaataaaatttaaatggggattaatgttggaaacatgcctatttataagaacctaaaacataattaaccc 36362177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 21794854 - 21794779
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaacc 133  Q
    ||||| |||||||||||||||||||||  |||||||||||||    |||||||  |||||| ||||||||||||||    
T  21794854 caaaaatttaataaaatttaagtaggggttaatgttggaaacacggctatttaagggaccttaaacataattaacc 21794779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 46595928 - 46595873
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg 114  Q
    |||| |||||||||||||||||||||||||| |||| |||||  ||||||||||||    
T  46595928 aaaaatttaataaaatttaagtagggactaacgttgaaaacgcgcctatttatagg 46595873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 29231113 - 29231071
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacg 100  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  29231113 caaaaatttaataaaatttaagtaaggactaatgttggaaacg 29231071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 21795912 - 21795989
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| |||||||||||||||||||||||| |||||| ||||    ||||||||| |||||| |||||||||| ||||    
T  21795912 caaaaatttaataaaatttaagtagggactgatgttgtaaacacgtctatttatagggaccttaaacataatttaccc 21795989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 12251894 - 12251981
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| ||| |||| ||||||||||||||| ||||||| |||||||||| |   | |||||||| |||| | |||||||||||||||    
T  12251894 cgttggggatgaaaaatttaataaaatttaaatagggaccaatgttggaagctcgcttatttatagggactttaaacataattaaccc 12251981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 49768946 - 49769021
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaaccc 134  Q
    |||| ||||||||||||||| ||||||| |||||| ||| |  || |||||| ||||| | |||||||||||||||    
T  49768946 aaaaatttaataaaatttaaatagggaccaatgttagaagctcacttatttacaggactttaaacataattaaccc 49769021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 12898900 - 12898986
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| ||| |||| ||||||||||||||| |||| || |||||||||| |   | |||||||| |||||| |||||||||||||||    
T  12898900 gttggggatgaaaaatttaataaaatttaaataggaaccaatgttggaagctcgcttatttatagggaccttaaacataattaaccc 12898986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 51338224 - 51338175
Alignment:
Q  50 ttggagatcaaaattttaataaaatttaagtagggactaatgttggaaac 99  Q
    |||||||| |||| ||||||||||||||| |||| || ||||||||||||    
T  51338224 ttggagatgaaaaatttaataaaatttaaataggaaccaatgttggaaac 51338175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 27550547 - 27550471
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    |||| ||||||||||||||| ||||||  |||||||||| |  || |||||||||| || | |||||||||||||||    
T  27550547 aaaaatttaataaaatttaaatagggatcaatgttggaagctcacttatttataggtactttaaacataattaaccc 27550471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 41138802 - 41138720
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    ||||| ||||||||||||||||||||||||||||||||| |||  |||||||||| |||||||||||||||||||||||||||    
T  41138802 caaaaatttaataaaatttaagtagggactaatgttggagacgcgcctatttatagggacctaaaacataattaacccaaaaa 41138720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 41140140 - 41140217
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  41140140 caaaaatttaataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaaccc 41140217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 13921172 - 13921251
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaacccaa 136  Q
    ||||| ||||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||    
T  13921172 caaaaatttaataaaatttaaatagggactaatgttggaaacgcgcctatttataaggacctaaaacataattaacccaa 13921251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 23318045 - 23318132
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||    
T  23318045 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacataattaaccc 23318132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 26866197 - 26866274
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||    
T  26866197 caaaaatttaataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacataattaaccc 26866274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 18951154 - 18951237
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaa 131  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||   | ||||||| ||||||||||||||||||||    
T  18951154 gttggggatcaaaaatttaataaaatttaagtagggactaatgttggaaacacgcttatttataaggacctaaaacataattaa 18951237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 26865017 - 26864926
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaa 138  Q
    |||||| || ||||| || ||||||||||||||||||||||||||| ||||||  | |||||||| ||||||||||||||||||| ||||||    
T  26865017 cgttggggaccaaaaattgaataaaatttaagtagggactaatgttagaaacgcgcttatttatagggacctaaaacataattaatccaaaa 26864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 8217292 - 8217215
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccc 134  Q
    ||||| |||||||||||||| || ||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  8217292 caaaaatttaataaaatttatgttggggctaatgttggaaacacacctatttataggaacctaaaacataattaaccc 8217215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 8218509 - 8218596
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggact-aatgttggaaacgaacctatttatag-gacctaaaacataattaacc 133  Q
    |||||| || |||||  ||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||||    
T  8218509 cgttggggaccaaaaacttaataaaatttaagtagggactaaatgttggaaacacacctatttatagagacctaaaatataattaacc 8218596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 19116934 - 19116859
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaacc 133  Q
    ||||| ||||||||||||||||||||||||||| ||| ||| | |||||||||  |||| ||||||||||||||||    
T  19116934 caaaaatttaataaaatttaagtagggactaatattgaaaatgcacctatttacgggacataaaacataattaacc 19116859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 23312733 - 23312658
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaac 132  Q
    ||||| |||||||||||||||||||| | |||||||||||||   |||||||||| ||||||||||||||||||||    
T  23312733 caaaaatttaataaaatttaagtaggaattaatgttggaaacacgcctatttatagggacctaaaacataattaac 23312658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 38693955 - 38694034
Alignment:
Q  55 gatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacc 133  Q
    |||||||| ||||||||||||||||| |||| |||| ||||||||   |||||||||| |||||||||||||||||||||    
T  38693955 gatcaaaaatttaataaaatttaagtggggattaatattggaaacacgcctatttatagggacctaaaacataattaacc 38694034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 34527620 - 34527697
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaaccc 134  Q
    ||||| |||||||||||||||||||| | |||||||||||||   ||||||||||| || ||||||||||||||||||    
T  34527620 caaaaatttaataaaatttaagtaggaattaatgttggaaacacgcctatttatagagatctaaaacataattaaccc 34527697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 43440034 - 43439949
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacc 133  Q
    ||||| || ||||| |||||||||||||||||||| |||||||||| ||||   |||||||||| |||||||||| ||||||||||    
T  43440034 gttggggaccaaaaatttaataaaatttaagtaggaactaatgttgaaaacacgcctatttatagggacctaaaagataattaacc 43439949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 20898532 - 20898445
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||| ||||||||| ||| ||||||||||||||  ||||| ||||| |||||| |||||||||||||||    
T  20898532 cgttggggaccaaaaatttaatacaatttaagttggggctaatgttggaaacacacctaattatagggaccttaaacataattaaccc 20898445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 34526798 - 34526721
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| |||||||||||||||||||  | |||||||||||||   |||||||||| |||||||||||||||| |||||    
T  34526798 caaaaatttaataaaatttaagtagaaattaatgttggaaacacgcctatttatagggacctaaaacataatcaaccc 34526721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 13919846 - 13919782
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata 112  Q
    ||||||| ||||||| || |||||||||||||| || ||||| ||||||||||  ||||||||||    
T  13919846 cgttggaaatcaaaaattcaataaaatttaagtgggaactaacgttggaaacgcgcctatttata 13919782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 28381342 - 28381410
Alignment:
Q  68 ataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccca 135  Q
    |||||||||||||| |||||||| ||  |||||  | |||||||| |||||||||||||||||||||||    
T  28381342 ataaaatttaagtatggactaatattaaaaacgcgcatatttataaggacctaaaacataattaaccca 28381410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 38691758 - 38691690
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaa 131  Q
    |||||||||||||||||||||| ||||||| ||||    ||||| ||||| ||||||||||||||||||    
T  38691758 tttaataaaatttaagtagggattaatgttagaaaaacgcctatatatagagacctaaaacataattaa 38691690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 43441380 - 43441455
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaacc 133  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||   ||||||| ||| ||||| ||||||||||||||    
T  43441380 caaaaatttaataaaatttaagtagagactaatgttgaaaacacgcctatttttagagacct-aaacataattaacc 43441455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 37812048 - 37811961
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| ||| |||| ||||||||||||| ||||||||| |||||||||| |   | ||||| || |||||| |||||||||||||||    
T  37812048 cgttggggatgaaaaatttaataaaattttagtagggaccaatgttggaagctcgcttatttgtagggaccttaaacataattaaccc 37811961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 28381122 - 28381090
Alignment:
Q  68 ataaaatttaagtagggactaatgttggaaacg 100  Q
    ||||||||||||||||||||||||||| |||||    
T  28381122 ataaaatttaagtagggactaatgttgaaaacg 28381090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 7375 - 7455
Alignment:
Q  50 ttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataatt 129  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  7375 ttggagataaaaaatttaataaaatttaagtagggactaatgttggaaacgcacctatttataaggatctaaaacataatt 7455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 5606 - 5519
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| |||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  5606 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttagaaacgcgcctatttatagggacctaaaacataattaaccc 5519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 15119350 - 15119442
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||| ||||    
T  15119350 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttggaaacacacctatttatagggaccttaaacataattaaccctaaaa 15119442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 7852324 - 7852241
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaat 140  Q
    ||||| |||||||||||||||||||||| |||||||| ||||   |||||||||| ||||||||||||||||||||||||||||    
T  7852324 caaaaatttaataaaatttaagtagggattaatgttgaaaacacgcctatttatagggacctaaaacataattaacccaaaaat 7852241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 22971679 - 22971592
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| ||| |||| |||||||||||||||||||||||| ||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  22971679 cgttggggataaaaaatttaataaaatttaagtagggactgatgttggaaacgcgcctatttatagggatctaaaacataattaaccc 22971592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 23816719 - 23816806
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| ||| |||| |||||||||||||||||||||||| ||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  23816719 cgttggggataaaaaatttaataaaatttaagtagggactgatgttggaaacgcgcctatttatagggatctaaaacataattaaccc 23816806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 17246590 - 17246679
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaacccaa 136  Q
    |||||| || ||||| ||||||||||||||||||||||||| |||| |||||   ||||||||||| |||||||||||||||||||||||    
T  17246590 cgttggggaccaaaaatttaataaaatttaagtagggactattgttagaaacacgcctatttatagagacctaaaacataattaacccaa 17246679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 7855398 - 7855485
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||| ||||   |||||||||| |||| |||||||||||||||||    
T  7855398 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttgaaaacacgcctatttatagggacttaaaacataattaaccc 7855485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 5080027 - 5080101
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaac 132  Q
    ||||| ||||||||||||||| |||| |||||| ||||||||  | |||||||||||||||||||||||||||||    
T  5080027 caaaaatttaataaaatttaaataggaactaatattggaaacacatctatttataggacctaaaacataattaac 5080101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 3335678 - 3335761
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaa 131  Q
    |||||| ||||||||||| ||||||||||| ||||||| |||||||||||||   |||||||||||| ||||||| |||||||||    
T  3335678 cgttggggatcaaaattt-aataaaatttatgtagggagtaatgttggaaacacgcctatttataggaacctaaagcataattaa 3335761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 22972305 - 22972380
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaac 132  Q
    ||||| ||||||||||| ||||||||||||||| ||| ||||   ||||||||| || ||||||||||||||||||    
T  22972305 caaaaatttaataaaatataagtagggactaatattgaaaacacgcctatttataagaacctaaaacataattaac 22972380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 23816093 - 23816018
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaac 132  Q
    ||||| ||||||||||| ||||||||||||||| ||| ||||   ||||||||| || ||||||||||||||||||    
T  23816093 caaaaatttaataaaatataagtagggactaatattgaaaacacgcctatttataagaacctaaaacataattaac 23816018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 289890 - 289981
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaacccaaaaa 139  Q
    |||||||||| |||| ||||||||||||||| ||||||| ||||||  |  |   | ||||||||| |||| |||||||| |||||||||||    
T  289890 cgttggagataaaaaatttaataaaatttaaatagggaccaatgttaaatgctcgcttatttatagaaccttaaacataactaacccaaaaa 289981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 21108597 - 21108684
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaaccca 135  Q
    ||||| ||| |||| ||||||||||||| ||||||||| |||||||||| |   | ||||| |||| |||| ||||||||||||||||    
T  21108597 gttggggatgaaaaatttaataaaattttagtagggaccaatgttggaagctcgcttatttgtaggaaccttaaacataattaaccca 21108684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 5078771 - 5078733
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaa 97  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  5078771 aaaaatttaataaaatttatgtagggactaatgttggaa 5078733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 8230986 - 8230922
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata 112  Q
    |||||| |||||||| |||||||||||||||||||| |  ||||||  |||||  ||||||||||    
T  8230986 cgttggggatcaaaaatttaataaaatttaagtaggaaaaaatgttcaaaacgcgcctatttata 8230922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 25569 - 25652
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaat 140  Q
    ||||| |||||||||||||||||| |||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||    
T  25569 caaaaatttaataaaatttaagtatggactaatgttgaaaacgcgcctatttatagggacctaaaacataattaacccaaaaat 25652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 23384 - 23459
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaa 122  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  23384 cgttggggatcaaaaatgtaataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaa 23459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 24907 - 24976
Alignment:
Q  70 aaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaa 138  Q
    |||||||||||||||||||||||| |||| |  |||||||||| |||||||||||||||||||| |||||    
T  24907 aaaatttaagtagggactaatgttagaaatgtgcctatttatagggacctaaaacataattaactcaaaa 24976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 49269 - 49352
Alignment:
Q  52 ggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||    
T  49269 ggagaccaaaaatttaataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacataattaaccc 49352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 20721740 - 20721823
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaat 140  Q
    ||||| |||||||||||||||||| |||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||    
T  20721740 caaaaatttaataaaatttaagtatggactaatgttgaaaacgcgcctatttatagggacctaaaacataattaacccaaaaat 20721823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 23787396 - 23787314
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaa 139  Q
    ||||| ||||||||||||||||| ||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||    
T  23787396 caaaaatttaataaaatttaagtggggactaatgttggaaacacgcctatttatagggacctaaaacataattaacccaaaaa 23787314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 3105939 - 3106004
Alignment:
Q  70 aaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  3105939 aaaatttaagtagggactaatgttggaaacgcacctatttatagggacctaaaacataattaaccc 3106004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 44494019 - 44494100
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttat-aggacctaaaacataattaacccaaaa 138  Q
    ||||| ||||||||||||||||||||||||||||||||||||   || |||||| |||||||||||||||||||||||||||    
T  44494019 caaaaatttaataaaatttaagtagggactaatgttggaaacacgccaatttataaggacctaaaacataattaacccaaaa 44494100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 1373721 - 1373796
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaaccc 134  Q
    |||| ||||||||||||||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||    
T  1373721 aaaaatttaataaaatttaagtagggactaatgttggaaacacgtctatttatagaacctaaaacataattaaccc 1373796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 20721057 - 20721148
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaa 138  Q
    |||||| || ||||| |||||||||||||||||||||||||||||| |||| |  |||||||||| |||||||||||||||||||| |||||    
T  20721057 cgttggggaccaaaaatttaataaaatttaagtagggactaatgttagaaatgtgcctatttatagggacctaaaacataattaactcaaaa 20721148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 33001371 - 33001457
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacc 133  Q
    |||||| |||||||| |||||||||||||||| |||||||||||||||||||    ||||||||| |||||||||||||||||||||    
T  33001371 cgttggggatcaaaaatttaataaaatttaagcagggactaatgttggaaacacgtctatttatagggacctaaaacataattaacc 33001457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 1373350 - 1373257
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacccaaaaat 140  Q
    |||||| || ||||| |||||||||||||| |||||||||||||||||||||   |||||||||| |||||||||||||||| ||||| |||||    
T  1373350 cgttggtgaccaaaaatttaataaaatttatgtagggactaatgttggaaacatgcctatttatagggacctaaaacataatcaaccctaaaat 1373257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 44492665 - 44492580
Alignment:
Q  50 ttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||| ||||| || |||||||||||||||||| ||| ||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  44492665 ttggggatcacaaatttaataaaatttaagtatggattaatgttggaaacgcgcctatttatagggacctaaaacataattaaccc 44492580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 20719546 - 20719621
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaa 122  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  20719546 cgttggggatcaaaaatgtaataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaa 20719621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 21439082 - 21438995
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| || ||||| ||||||||||||||||||  |||||||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  21439082 cgttggggaccaaaaatttaataaaatttaagtatagactaatgttggaaacgcgcctatttatagggatctaaaacataattaaccc 21438995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 18672038 - 18671973
Alignment:
Q  70 aaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  18672038 aaaatttaagtaaggactaatgttggaaacgcacctatttatatggatctaaaacataattaaccc 18671973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 18673331 - 18673414
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag--gacctaaaacataattaacccaaaaa 139  Q
    ||||| ||||||||||||||| |||||| |||||||||||||   |||||||||||   |||||||||||||||||||||||||    
T  18673331 caaaaatttaataaaatttaaatagggattaatgttggaaacacgcctatttatagaaaacctaaaacataattaacccaaaaa 18673414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 42488178 - 42488262
Alignment:
Q  49 gttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaac 132  Q
    ||||| || ||||| |||||||||||||||||||| |||||||||| ||||  |||||||| || ||||||||||||||||||||    
T  42488178 gttggggaccaaaaatttaataaaatttaagtaggaactaatgttgaaaacacacctatttttagggacctaaaacataattaac 42488262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 33000747 - 33000674
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaac 132  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||  |||||||||||||||| | |||||||||||    
T  33000747 caaaaatttaataaaatttaagtaggaactaacgttggaaacgcgcctatttataggacct-atacataattaac 33000674  T

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Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 42486828 - 42486757
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaa 131  Q
    ||||| |||||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||| ||||||||    
T  42486828 caaaaatttaataaaatttaagtatggactaatgttggaaacgcgcctatttata-gacctaaaa-ataattaa 42486757  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 43933259 - 43933331
Alignment:
Q  64 tttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccca 135  Q
    ||||||||||||||||||| ||||||||||| ||||   |||||||||| |||||||||| ||||||||||||    
T  43933259 tttaataaaatttaagtagagactaatgttgaaaacacgcctatttatacggacctaaaaaataattaaccca 43933331  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 43931926 - 43931840
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaacc 133  Q
    |||||| || ||||| ||||||||||||||||||| ||||||| ||| ||||    ||||||||| |||||||||||||||||||||    
T  43931926 cgttggggaccaaaaatttaataaaatttaagtagagactaatattgaaaacaccgctatttatagggacctaaaacataattaacc 43931840  T

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Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 3104766 - 3104693
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaa 131  Q
    |||| |||||||||||||||||| | |||||||||||||||   | |||||||| |||||||||||||||||||    
T  3104766 aaaaatttaataaaatttaagtatgaactaatgttggaaacacgcttatttatagggacctaaaacataattaa 3104693  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 9190131 - 9190056
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaac 132  Q
    ||||| |||| ||||||||||||| ||||||||||| |||||||  ||||||| || ||||| |||||||||||||    
T  9190131 caaaagtttattaaaatttaagtatggactaatgttagaaacgagactatttacagagaccttaaacataattaac 9190056  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 38276128 - 38276051
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaaca 124  Q
    |||||| || ||||| |||||||||||||| |||| |||||||||||||||    |||||||||| ||||||||||||    
T  38276128 cgttggggaccaaaaatttaataaaatttatgtagagactaatgttggaaatacgcctatttatagggacctaaaaca 38276051  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 30982933 - 30983013
Alignment:
Q  59 aaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttataggacctaaaacataattaacccaaaaa 139  Q
    |||| ||||||||||||| ||||||||| |||||||||| |   | ||||| || ||||| ||||||||||||||| ||||    
T  30982933 aaaaatttaataaaattttagtagggaccaatgttggaagctcgcttatttgtatgaccttaaacataattaaccctaaaa 30983013  T

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Target: scaffold0287 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 230 - 316
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatagg-acctaaaacataattaacc 133  Q
    ||||||||| ||||| | ||||||||||||||||| | ||||||||| |||||  ||||||||| || |||||||||||||||||||    
T  230 cgttggagaccaaaaatataataaaatttaagtagaggctaatgttgaaaacgcgcctatttattggaacctaaaacataattaacc 316  T

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Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 34742 - 34672
Alignment:
Q  65 ttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaaccc 134  Q
    |||||| |||||||||||||| |||||||| ||||  |||||||||||| ||||||||| |||||||||||    
T  34742 ttaatacaatttaagtagggattaatgttgaaaacacacctatttatagagacctaaaatataattaaccc 34672  T

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Target: scaffold0148; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 38891 - 38970
Alignment:
Q  50 ttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataat 128  Q
    |||| |||||||| |||||||||||||| ||||| |||||||||| ||||   ||||||||||| ||||||||| |||||    
T  38891 ttggggatcaaaaatttaataaaatttatgtaggaactaatgttgaaaacatgcctatttatagagacctaaaatataat 38970  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 282698 - 282611
Alignment:
Q  48 cgttggagatcaaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||| ||| |||| ||||||||||||||| ||||||| ||||||||||||   | |||||||| |||| | |||||||||||||||    
T  282698 cgttggggatgaaaaatttaataaaatttaaatagggaccaatgttggaaactcgcttatttatagggactttaaacataattaaccc 282611  T

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Target: scaffold0385 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 10469 - 10545
Alignment:
Q  58 caaaattttaataaaatttaagtagggactaatgttggaaacgaacctatttatag-gacctaaaacataattaacc 133  Q
    ||||| ||||||||||||||||||| ||||||| ||  ||| |   |||||||||| ||||||||||||||||||||    
T  10469 caaaaatttaataaaatttaagtagagactaatattaaaaatgcgtctatttatagagacctaaaacataattaacc 10545  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 100958 - 101030
Alignment:
Q  63 ttttaataaaatttaagtagggactaatgttggaaacgaacctatttata-ggacctaaaacataattaaccc 134  Q
    |||||||||||||||| ||||||| |||||| |||||   | ||||| || |||||| |||||||||||||||    
T  100958 ttttaataaaatttaaatagggaccaatgttagaaacttgcttatttgtagggaccttaaacataattaaccc 101030  T

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